Hole Traps in DNA
Sequences of guanines, GG and GGG, are known to be readily oxidized, forming radical cations, i.e., hole traps, on DNA. The trapping probability of GG is less than that of GGG. Lewis et al. (J. Am. Chem. Soc. 2000, 122, 12037) have used measurements on synthetic hairpins to determine the free energy...
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Published in | Journal of the American Chemical Society Vol. 123; no. 46; pp. 11441 - 11445 |
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Main Authors | , |
Format | Journal Article |
Language | English |
Published |
United States
American Chemical Society
21.11.2001
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Subjects | |
Online Access | Get full text |
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Summary: | Sequences of guanines, GG and GGG, are known to be readily oxidized, forming radical cations, i.e., hole traps, on DNA. The trapping probability of GG is less than that of GGG. Lewis et al. (J. Am. Chem. Soc. 2000, 122, 12037) have used measurements on synthetic hairpins to determine the free energy liberated when a hole goes from the radical cation G+ to GG or to GGG. They find these free energies to be of the order of thermal energy at room temperature, in contradiction to the expectation by many of much greater trap depths. We have calculated the wave function of a hole on G, on GG, and on GGG surrounded by adenines, as in the Lewis et al. experiments, using a simple tight-binding model. We find that to account for the shallow traps found by them it is necessary that the difference in ionization potentials of contiguous guanine and adenine be smaller by about 0.2 eV than the 0.4 eV found for isolated bases. Using this value and taking into account polaron formation, we find the wave functions of holes trapped on G, GG, or GGG to extend over ∼6 sites (bases) and with energy level differences in good agreement with the values found by Lewis et al. |
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Bibliography: | istex:7568E62732E399653EEB431F6B307E1CF6CDD0CB ark:/67375/TPS-K47925PV-6 ObjectType-Article-2 SourceType-Scholarly Journals-1 ObjectType-Feature-1 content type line 23 ObjectType-Article-1 ObjectType-Feature-2 |
ISSN: | 0002-7863 1520-5126 |
DOI: | 10.1021/ja015947v |