Conformational Equilibrium of the Reactive Center Loop of Antithrombin Examined by Steady State and Time-Resolved Fluorescence Measurements:  Consequences for the Mechanism of Factor Xa Inhibition by Antithrombin−Heparin Complexes

• Published in: Biochemistry (Easton) Vol. 40; no. 22; pp. 6680 - 6687
• Main Authors: Futamura, Akiko, Beechem, Joseph M, Gettins, Peter G. W
• Format: Journal Article
• Language: English
• Published: United States American Chemical Society 05.06.2001
• Subjects: Allosteric Regulation - genetics; Animals; Antithrombins - chemistry; Antithrombins - genetics; Antithrombins - metabolism; Binding Sites - genetics; Cell Line; Cricetinae; Factor Xa - metabolism; Factor Xa Inhibitors; Fluorescent Dyes - metabolism; Heparin - metabolism; Humans; Macromolecular Substances; Mutagenesis, Site-Directed; Oxadiazoles - metabolism; Protein Conformation; Serine Proteinase Inhibitors - chemistry; Serine Proteinase Inhibitors - genetics; Serine Proteinase Inhibitors - metabolism; Spectrometry, Fluorescence; Thermodynamics
• ISSN: 0006-2960; 1520-4995
• DOI: 10.1021/bi0029346

Activation of antithrombin by high-affinity heparin as an inhibitor of factor Xa has been ascribed to an allosteric switch between two conformations of the reactive center loop. However, we have previously shown that other, weaker binding, charged polysaccharides can give intermediate degrees of activation [Gettins, P. G. W., et al. (1993) Biochemistry 32, 8385−8389]. To examine whether such intermediate activation results from different reactive center loop conformations or, more simply, from a different equilibrium constant between the same two extreme conformations, we have used NBD covalently bound at the P1 position of an engineered R393C variant of antithrombin as a fluorescent reporter group and measured fluorescence lifetimes of the label in free antithrombin as well as in antithrombin saturated with long-chain high-affinity heparin, high-affinity heparin pentasaccharide, long-chain low-affinity heparin, and dextran sulfate. Steady state emission spectra, anisotropies, and dynamic quenching measurements were also recorded. We found that the large steady state fluorescence enhancements produced by binding of activators resulted from relief of a static quench of fluorescence of NBD in ∼50% of the labeled antithrombin molecules rather than from any large change in lifetimes, and that similar lifetimes were found for NBD in all activated antithrombin−oligosaccharide complexes. Similar anisotropies and positions of the NBD emission maxima were also found in the absence and presence of activators. In addition, NBD was accessible to quenching agents in both the absence and presence of activators, with an at most 2-fold increase in quenching constants between these two extremes. The simplest interpretation of the partial static quench in the absence of activators, the different degrees of enhancement by different antithrombin activators, and the similar fluorescence properties and quenching behavior of the different states is that there are two distinct types of conformational equilibrium involving three distinct states of antithrombin, which we designate A, A‘, and B. A and A‘ represent low-affinity or inactive states of approximately equal energy, both having the hinge residues inserted into β-sheet A. A is fluorescent, while A‘ is statically quenched. State B represents the activated loop-expelled conformation in which none of the NBD fluorophores are statically quenched, as a result of the loop, including the P1-NBD, moving away from the body of the antithrombin. Different activators are able to shift the equilibrium to the high-activity (B) state to different extents and hence give different degrees of measured activity, and different degrees of relief of static quench. The similar properties and accessibility of the NBD in the A and B conformations also indicate that the P1 side chain is not buried in the low-activity A conformation, suggesting that an earlier proposal that activation involves exposure of the P1 side chain cannot be the explanation for activation. As an alternative explanation, heparin activation may give access to an exosite on antithrombin for binding to factor Xa and hence be the principal basis for enhancement of the rate of inhibition.