Collision Induced Dissociation of Deprotonated Isoxazole and 3‑Methyl Isoxazole via Direct Chemical Dynamics Simulations

• Published in: Journal of the American Society for Mass Spectrometry Vol. 34; no. 4; pp. 710 - 719
• Main Authors: Priya, Himani, Paranjothy, Manikandan
• Format: Journal Article
• Language: English
• Published: United States American Chemical Society 05.04.2023
• ISSN: 1044-0305; 1879-1123; 1879-1123
• DOI: 10.1021/jasms.2c00366

Isoxazoles are an important class of organic compounds widely employed in synthesis and drug design. Fragmentation chemistry of the parent isoxazole molecule and its substituents has been the subject of several experimental and theoretical investigations. Collision induced dissociation (CID) of isoxazole and its substituents has been studied experimentally under negative ion conditions. Based on the observed reaction products, dissociation patterns were proposed. In the present work, we studied the dissociation chemistry of deprotonated isoxazole and 3-methyl isoxazole using electronic structure theory calculations and direct chemical dynamics simulations. Various deprotonated isomers of these molecules were activated by collision with an Ar atom, and the ensuing fractionation patterns were studied using on-the-fly classical trajectory simulations at the density functional B3LYP/6-31+G* level of electronic structure theory. A variety of reaction products and pathways were observed, and it was found that a nonstatistical shattering mechanism dominates the CID dynamics of these molecules. Simulation results are compared with experiments, and detailed atomic level dissociation mechanisms are presented.