Sieve: Scalable In-situ DRAM-based Accelerator Designs for Massively Parallel k-mer Matching

• Published in: 2021 ACM/IEEE 48th Annual International Symposium on Computer Architecture (ISCA) pp. 251 - 264
• Main Authors: Wu, Lingxi, Sharifi, Rasool, Lenjani, Marzieh, Skadron, Kevin, Venkat, Ashish
• Format: Conference Proceeding
• Language: English
• Published: IEEE 01.06.2021
• Subjects: Accelerator; Bioinformatics; Computer architecture; Genomics; Graphics processing units; Hardware; Pipelines; Processing-in-memory; Random access memory; Throughput

The rapid influx of biosequence data, coupled with the stagnation of the processing power of modern computing systems, highlights the critical need for exploring high-performance accelerators that can meet the ever-increasing throughput demands of modern bioinformatics applications. This work argues...