Bioinformatics Integration Framework for Metabolic Pathway Data-Mining

A vast amount of bioinformatics information is continuously being introduced to different databases around the world. Handling the various applications used to study this information present a major data management and analysis challenge to researchers. The present work investigates the problem of i...

Full description

Saved in:
Bibliographic Details
Published inAdvances in Applied Artificial Intelligence pp. 917 - 926
Main Authors Tomás, Arredondo V., Michael, Seeger P., Dombrovskaia, Lioubov, Jorge, Avarias A., Felipe, Calderón B., Diego, Candel C., Freddy, Muñoz R., Valeria, Latorre R., Agulló, Loreine, Macarena, Cordova H., Gómez, Luis
Format Book Chapter
LanguageEnglish
Published Berlin, Heidelberg Springer Berlin Heidelberg 2006
SeriesLecture Notes in Computer Science
Subjects
Acidithiobacillus Ferrooxidans
Fuzzy Logic
Metabolic Network
Metabolic Path
Metabolic Pathway
Online AccessGet full text

Cover

Abstract A vast amount of bioinformatics information is continuously being introduced to different databases around the world. Handling the various applications used to study this information present a major data management and analysis challenge to researchers. The present work investigates the problem of integrating heterogeneous applications and databases towards providing a more efficient data-mining environment for bioinformatics research. A framework is proposed and GeXpert, an application using the framework towards metabolic pathway determination is introduced. Some sample implementation results are also presented.
AbstractList A vast amount of bioinformatics information is continuously being introduced to different databases around the world. Handling the various applications used to study this information present a major data management and analysis challenge to researchers. The present work investigates the problem of integrating heterogeneous applications and databases towards providing a more efficient data-mining environment for bioinformatics research. A framework is proposed and GeXpert, an application using the framework towards metabolic pathway determination is introduced. Some sample implementation results are also presented.
Author Diego, Candel C.
Freddy, Muñoz R.
Felipe, Calderón B.
Michael, Seeger P.
Dombrovskaia, Lioubov
Jorge, Avarias A.
Agulló, Loreine
Tomás, Arredondo V.
Valeria, Latorre R.
Macarena, Cordova H.
Gómez, Luis
Author_xml – sequence: 1
  givenname: Arredondo V.
  surname: Tomás
  fullname: Tomás, Arredondo V.
  email: tarredondo@elo.utfsm.cl
  organization: Departamento de Electrónica, Chile
– sequence: 2
  givenname: Seeger P.
  surname: Michael
  fullname: Michael, Seeger P.
  organization: Millennium Nucleus EMBA, Departamento de Química, Chile
– sequence: 3
  givenname: Lioubov
  surname: Dombrovskaia
  fullname: Dombrovskaia, Lioubov
  organization: Departamento de Informática, Universidad Técnica Federico Santa María, Valparaíso, Chile
– sequence: 4
  givenname: Avarias A.
  surname: Jorge
  fullname: Jorge, Avarias A.
  organization: Departamento de Informática, Universidad Técnica Federico Santa María, Valparaíso, Chile
– sequence: 5
  givenname: Calderón B.
  surname: Felipe
  fullname: Felipe, Calderón B.
  organization: Departamento de Informática, Universidad Técnica Federico Santa María, Valparaíso, Chile
– sequence: 6
  givenname: Candel C.
  surname: Diego
  fullname: Diego, Candel C.
  organization: Departamento de Informática, Universidad Técnica Federico Santa María, Valparaíso, Chile
– sequence: 7
  givenname: Muñoz R.
  surname: Freddy
  fullname: Freddy, Muñoz R.
  organization: Departamento de Informática, Universidad Técnica Federico Santa María, Valparaíso, Chile
– sequence: 8
  givenname: Latorre R.
  surname: Valeria
  fullname: Valeria, Latorre R.
  organization: Millennium Nucleus EMBA, Departamento de Química, Chile
– sequence: 9
  givenname: Loreine
  surname: Agulló
  fullname: Agulló, Loreine
  organization: Millennium Nucleus EMBA, Departamento de Química, Chile
– sequence: 10
  givenname: Cordova H.
  surname: Macarena
  fullname: Macarena, Cordova H.
  organization: Millennium Nucleus EMBA, Departamento de Química, Chile
– sequence: 11
  givenname: Luis
  surname: Gómez
  fullname: Gómez, Luis
  organization: Millennium Nucleus EMBA, Departamento de Química, Chile
BookMark eNqVjz2LAjEURZ-rws6olX8grcXoy2TGTNpVBy0EC_sQJWr8SCQJyP57Z2EFW4vLvXBuc1LoWGc1wJDimCLyCaWci3JaSVG1YCB4xcoCm5QF-4KETinNGCtEG9IXYNiBBBnmmeAF-4Y0hDMi5lzkCdQ_xhl7cP6motkHsrJRH32znSW1Vzf9cP5CGk7WOqqdu5o92ah4eqhfMldRZWtjjT32oXtQ16AH_92DUb3YzpZZuPsGay93zl2CpCj_LOSbBfvk-wSul0lK
ContentType Book Chapter
Copyright Springer-Verlag Berlin Heidelberg 2006
Copyright_xml – notice: Springer-Verlag Berlin Heidelberg 2006
DOI 10.1007/11779568_98
DatabaseTitleList
DeliveryMethod fulltext_linktorsrc
Discipline Engineering
Computer Science
EISBN 9783540354543
3540354549
EISSN 1611-3349
Editor Ali, Moonis
Dapoigny, Richard
Editor_xml – sequence: 1
  givenname: Moonis
  surname: Ali
  fullname: Ali, Moonis
  email: ma04@txstate.edu
– sequence: 2
  givenname: Richard
  surname: Dapoigny
  fullname: Dapoigny, Richard
  email: listic@esia.univ-savoie.fr
EndPage 926
GroupedDBID -DT
-GH
-~X
1SB
29L
2HA
2HV
5QI
875
AASHB
ABMNI
ACGFS
ADCXD
AEFIE
ALMA_UNASSIGNED_HOLDINGS
EJD
F5P
FEDTE
HVGLF
LAS
LDH
P2P
RIG
RNI
RSU
SVGTG
VI1
~02
ID FETCH-springer_books_10_1007_11779568_983
ISBN 3540354530
9783540354536
ISSN 0302-9743
IngestDate Wed Nov 06 06:05:20 EST 2024
IsPeerReviewed false
IsScholarly false
Language English
LinkModel OpenURL
MergedId FETCHMERGED-springer_books_10_1007_11779568_983
ParticipantIDs springer_books_10_1007_11779568_98
PublicationCentury 2000
PublicationDate 2006
PublicationDateYYYYMMDD 2006-01-01
PublicationDate_xml – year: 2006
  text: 2006
PublicationDecade 2000
PublicationPlace Berlin, Heidelberg
PublicationPlace_xml – name: Berlin, Heidelberg
PublicationSeriesSubtitle Lecture Notes in Artificial Intelligence
PublicationSeriesTitle Lecture Notes in Computer Science
PublicationSubtitle 19th International Conference on Industrial, Engineering and Other Applications of Applied Intelligent Systems, IEA/AIE 2006, Annecy, France, June 27-30, 2006. Proceedings
PublicationTitle Advances in Applied Artificial Intelligence
PublicationYear 2006
Publisher Springer Berlin Heidelberg
Publisher_xml – name: Springer Berlin Heidelberg
RelatedPersons Kleinberg, Jon M.
Mattern, Friedemann
Nierstrasz, Oscar
Tygar, Dough
Steffen, Bernhard
Kittler, Josef
Vardi, Moshe Y.
Weikum, Gerhard
Sudan, Madhu
Naor, Moni
Mitchell, John C.
Terzopoulos, Demetri
Pandu Rangan, C.
Kanade, Takeo
Hutchison, David
RelatedPersons_xml – sequence: 1
  givenname: David
  surname: Hutchison
  fullname: Hutchison, David
  organization: Lancaster University, UK
– sequence: 2
  givenname: Takeo
  surname: Kanade
  fullname: Kanade, Takeo
  organization: Carnegie Mellon University, Pittsburgh, USA
– sequence: 3
  givenname: Josef
  surname: Kittler
  fullname: Kittler, Josef
  organization: University of Surrey, Guildford, UK
– sequence: 4
  givenname: Jon M.
  surname: Kleinberg
  fullname: Kleinberg, Jon M.
  organization: Cornell University, Ithaca, USA
– sequence: 5
  givenname: Friedemann
  surname: Mattern
  fullname: Mattern, Friedemann
  organization: ETH Zurich, Switzerland
– sequence: 6
  givenname: John C.
  surname: Mitchell
  fullname: Mitchell, John C.
  organization: Stanford University, CA, USA
– sequence: 7
  givenname: Moni
  surname: Naor
  fullname: Naor, Moni
  organization: Weizmann Institute of Science, Rehovot, Israel
– sequence: 8
  givenname: Oscar
  surname: Nierstrasz
  fullname: Nierstrasz, Oscar
  organization: University of Bern, Switzerland
– sequence: 9
  givenname: C.
  surname: Pandu Rangan
  fullname: Pandu Rangan, C.
  organization: Indian Institute of Technology, Madras, India
– sequence: 10
  givenname: Bernhard
  surname: Steffen
  fullname: Steffen, Bernhard
  organization: University of Dortmund, Germany
– sequence: 11
  givenname: Madhu
  surname: Sudan
  fullname: Sudan, Madhu
  organization: Massachusetts Institute of Technology, MA, USA
– sequence: 12
  givenname: Demetri
  surname: Terzopoulos
  fullname: Terzopoulos, Demetri
  organization: University of California, Los Angeles, USA
– sequence: 13
  givenname: Dough
  surname: Tygar
  fullname: Tygar, Dough
  organization: University of California, Berkeley, USA
– sequence: 14
  givenname: Moshe Y.
  surname: Vardi
  fullname: Vardi, Moshe Y.
  organization: Rice University, Houston, USA
– sequence: 15
  givenname: Gerhard
  surname: Weikum
  fullname: Weikum, Gerhard
  organization: Max-Planck Institute of Computer Science, Saarbruecken, Germany
SSID ssj0002792
ssj0000315761
Score 2.6331332
Snippet A vast amount of bioinformatics information is continuously being introduced to different databases around the world. Handling the various applications used to...
SourceID springer
SourceType Publisher
StartPage 917
SubjectTerms Acidithiobacillus Ferrooxidans
Fuzzy Logic
Metabolic Network
Metabolic Path
Metabolic Pathway
Title Bioinformatics Integration Framework for Metabolic Pathway Data-Mining
URI http://link.springer.com/10.1007/11779568_98
hasFullText 1
inHoldings 1
isFullTextHit
isPrint
link http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV1NT8JAEN0AXtSDihq_szFeDClBKC09eECFIAHCAQk30pUlIQaatAWj_8f_6ezOblvE4MehTdOSstk3mc7OzntDyJVbYbD0sU0DgoWiARZiGoxZ3GAus52RWxo5sk1nu2M1nszmoDxIpT4SVUvzkOWf37_llfwHVbgHuAqW7B-QjV4KN-Aa8IUzIAznL8HvcpoVy4tx917Ws-pYsurL0h8U0Ii1NuNU8lRujN9gC2JfiIXORl6un4_mHavoZU6Uc8EI7kbPHrwp871F8OJigW1r4s2Zt4hrcHxs015dwPrbDXLVfNIe7yaeEmmVwtCPSqZCWF9dF4jJmsc2D8EwhfZ2F6LTV_cNLDN0jbbsZIFOUIgzB7cttf3R8UKcBd2hQjustRkNndHMrRH8UgkrOMqon6I5YODfYYWELpOjS7eEUGMJhVGVm3aQL6q--A5y9lc-Jlg_Ina1Bady6FTSJG074EY3qrVmqx-l8kSjDNuKK4uEJiNuXuFgFKVIDlbJjMWDV5xRQedM_NPKvrwMd3q7ZFtQYKjgpsB07pEUn2XJjp5eqqY3S7YSapb7pL4MMU1ATCOIKTynEcRUQUwTEB-Q63qtd98w9NCGwviDoVa-Toy_dEgyM2_GjwitOG65xExWcExuFswRs8rj8ZiZsPAoiuX0Mbn8-X0nv_nRKdmMzemMZEJ_zs8hZAzZhYLsE-QtafQ
link.rule.ids 782,783,787,796,27937
linkProvider Library Specific Holdings
openUrl ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Abook&rft.genre=bookitem&rft.title=Advances+in+Applied+Artificial+Intelligence&rft.au=Tom%C3%A1s%2C+Arredondo+V.&rft.au=Michael%2C+Seeger+P.&rft.au=Dombrovskaia%2C+Lioubov&rft.au=Jorge%2C+Avarias+A.&rft.atitle=Bioinformatics+Integration+Framework+for+Metabolic+Pathway+Data-Mining&rft.series=Lecture+Notes+in+Computer+Science&rft.date=2006-01-01&rft.pub=Springer+Berlin+Heidelberg&rft.isbn=9783540354536&rft.issn=0302-9743&rft.eissn=1611-3349&rft.spage=917&rft.epage=926&rft_id=info:doi/10.1007%2F11779568_98
thumbnail_l http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=0302-9743&client=summon
thumbnail_m http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=0302-9743&client=summon
thumbnail_s http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=0302-9743&client=summon