Distinct core glycan and -glycoform utilization of SARS-CoV-2 Omicron variant Spike protein RBD revealed by top-down mass spectrometry
The SARS-CoV-2 Omicron (B.1.1.529) variant possesses numerous spike (S) mutations particularly in the S receptor-binding domain (S-RBD) that significantly improve transmissibility and evasion of neutralizing antibodies. But exactly how the mutations in the Omicron variant enhance viral escape from i...
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Published in | Chemical science (Cambridge) Vol. 13; no. 36; pp. 1944 - 1949 |
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Main Authors | , , , , , , |
Format | Journal Article |
Published |
21.09.2022
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Online Access | Get full text |
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Summary: | The SARS-CoV-2 Omicron (B.1.1.529) variant possesses numerous spike (S) mutations particularly in the S receptor-binding domain (S-RBD) that significantly improve transmissibility and evasion of neutralizing antibodies. But exactly how the mutations in the Omicron variant enhance viral escape from immunological protection remains to be understood. The S-RBD remains the principal target for neutralizing antibodies and therapeutics, thus new structural insights into the Omicron S-RBD and characterization of the post-translational glycosylation changes can inform rational design of vaccines and therapeutics. Here we report the molecular variations and
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-glycoform changes of the Omicron S-RBD variant as compared to wild-type (WA1/2020) and Delta (B.1.617.2) variants using high-resolution top-down mass spectrometry (MS). A novel
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-glycosite (Thr376) unique to the Omicron variant is identified. Moreover, we have directly quantified the Core 1 and Core 2
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-glycan structures and characterized the
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-glycoform structural heterogeneity of the three variants. Our findings reveal high resolution detail of Omicron
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-glycoforms and their utilization to provide direct molecular evidence of proteoform alterations in the Omicron variant which could shed light on how this variant escapes immunological protection.
Top-down mass spectrometry reveals
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-glycoform structural changes in the SARS-CoV-2 Omicron variant. Resolving the mutations and post-translational alterations can inform strategies for designing variant-directed diagnostics and therapeutics. |
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Bibliography: | https://doi.org/10.1039/d2sc02132c Electronic supplementary information (ESI) available. See |
ISSN: | 2041-6520 2041-6539 |
DOI: | 10.1039/d2sc02132c |