Synthetic biology of metabolic cycles for Enhanced CO 2 capture and Sequestration

In most organisms, the tri-carboxylic acid cycle (TCA cycle) is an essential metabolic system that is involved in both energy generation and carbon metabolism. Its uni-directionality, however, restricts its use in synthetic biology and carbon fixation. Here, it is describing the use of the modified...

Full description

Saved in:
Bibliographic Details
Published inBioorganic chemistry Vol. 153; p. 107774
Main Author Dowaidar, Moataz
Format Journal Article
LanguageEnglish
Published United States 06.09.2024
Subjects
Online AccessGet full text

Cover

Loading…
Abstract In most organisms, the tri-carboxylic acid cycle (TCA cycle) is an essential metabolic system that is involved in both energy generation and carbon metabolism. Its uni-directionality, however, restricts its use in synthetic biology and carbon fixation. Here, it is describing the use of the modified TCA cycle, called the Tri-carboxylic acid Hooked to Ethylene by Enzyme Reactions and Amino acid Synthesis, the reductive tricarboxylic acid branch/4-hydroxybutyryl-CoA/ethylmalonyl-CoA/acetyl-CoA (THETA) cycle, in Escherichia coli for the purposes of carbon fixation and amino acid synthesis. Three modules make up the THETA cycle: (1) pyruvate to succinate transformation, (2) succinate to crotonyl-CoA change, and (3) crotonyl-CoA to acetyl-CoA and pyruvate change. It is presenting each module's viability in vivo and showing how it integrates into the E. coli metabolic network to support growth on minimal medium without the need for outside supplementation. Enzyme optimization, route redesign, and heterologous expression were used to get over metabolic roadblocks and produce functional modules. Furthermore, the THETA cycle may be improved by including components of the Carbon-Efficient Tri-Carboxylic Acid Cycle (CETCH cycle) to improve carbon fixation. THETA cycle's promise as a platform for applications in synthetic biology and carbon fixation.
AbstractList In most organisms, the tri-carboxylic acid cycle (TCA cycle) is an essential metabolic system that is involved in both energy generation and carbon metabolism. Its uni-directionality, however, restricts its use in synthetic biology and carbon fixation. Here, it is describing the use of the modified TCA cycle, called the Tri-carboxylic acid Hooked to Ethylene by Enzyme Reactions and Amino acid Synthesis, the reductive tricarboxylic acid branch/4-hydroxybutyryl-CoA/ethylmalonyl-CoA/acetyl-CoA (THETA) cycle, in Escherichia coli for the purposes of carbon fixation and amino acid synthesis. Three modules make up the THETA cycle: (1) pyruvate to succinate transformation, (2) succinate to crotonyl-CoA change, and (3) crotonyl-CoA to acetyl-CoA and pyruvate change. It is presenting each module's viability in vivo and showing how it integrates into the E. coli metabolic network to support growth on minimal medium without the need for outside supplementation. Enzyme optimization, route redesign, and heterologous expression were used to get over metabolic roadblocks and produce functional modules. Furthermore, the THETA cycle may be improved by including components of the Carbon-Efficient Tri-Carboxylic Acid Cycle (CETCH cycle) to improve carbon fixation. THETA cycle's promise as a platform for applications in synthetic biology and carbon fixation.
Author Dowaidar, Moataz
Author_xml – sequence: 1
  givenname: Moataz
  surname: Dowaidar
  fullname: Dowaidar, Moataz
  email: moataz.dowaidar@kfupm.edu.sa
  organization: Bioengineering Department, King Fahd University of Petroleum and Minerals (KFUPM), Dhahran 31261, Saudi Arabia; Interdisciplinary Research Center for Hydrogen Technologies and Carbon Management, King Fahd University of Petroleum and Minerals (KFUPM), Dhahran, 31261, Saudi Arabia; Biosystems and Machines Research Center, King Fahd University of Petroleum and Minerals (KFUPM), Dhahran, 31261, Saudi Arabia. Electronic address: moataz.dowaidar@kfupm.edu.sa
BackLink https://www.ncbi.nlm.nih.gov/pubmed/39260160$$D View this record in MEDLINE/PubMed
BookMark eNqFjrEOgjAUABujEVF_wbwfIGnBYJgJxs0Y3EkpD6kpLbZl6N_roLPTJZcbLiZLbTQuyIbRgiYpS2lEYueelDJ2POVrEmVFmlOW0w251UH7Ab0U0EqjzCOA6WFEz1ujPlIEodBBbyxUeuBaYAflFVIQfPKzReC6gxpfMzpvuZdG78iq58rh_sstOZyre3lJprkdsWsmK0duQ_N7yP4GbzAIPfk
ContentType Journal Article
Copyright Copyright © 2024 Elsevier Inc. All rights reserved.
Copyright_xml – notice: Copyright © 2024 Elsevier Inc. All rights reserved.
DBID NPM
DatabaseName PubMed
DatabaseTitle PubMed
DatabaseTitleList PubMed
Database_xml – sequence: 1
  dbid: NPM
  name: PubMed
  url: https://proxy.k.utb.cz/login?url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed
  sourceTypes: Index Database
DeliveryMethod fulltext_linktorsrc
Discipline Chemistry
Anatomy & Physiology
EISSN 1090-2120
ExternalDocumentID 39260160
Genre Review
Journal Article
GroupedDBID ---
--K
--M
-DZ
-~X
.~1
0R~
1B1
1RT
1~.
1~5
23N
4.4
457
4G.
5GY
5VS
7-5
71M
8P~
9JM
9JN
AAAJQ
AACTN
AAEDT
AAEDW
AAIKJ
AAKOC
AALRI
AAOAW
AAQFI
AARKO
AARLI
AAXKI
AAXUO
ABGSF
ABJNI
ABMAC
ABUDA
ABZDS
ACDAQ
ACGFS
ACNCT
ACRLP
ADBBV
ADECG
ADEZE
ADUVX
AEBSH
AEHWI
AEKER
AENEX
AFJKZ
AFKWA
AFTJW
AFXIZ
AFZHZ
AGEKW
AGHFR
AGUBO
AGYEJ
AIEXJ
AIKHN
AITUG
AJOXV
AJSZI
AKRWK
ALCLG
ALMA_UNASSIGNED_HOLDINGS
AMFUW
AMRAJ
AXJTR
BKOJK
BLXMC
CJTIS
CS3
DM4
DU5
EBS
EFBJH
EO8
EO9
EP2
EP3
F5P
FDB
FIRID
FLBIZ
FNPLU
FYGXN
G-Q
GBLVA
J1W
KOM
LG5
LUGTX
LX2
LZ5
M2Y
M33
M41
MO0
N9A
NPM
O-L
O9-
OAUVE
OGGZJ
OZT
P-8
P-9
P2P
PC.
Q38
RIG
RNS
ROL
RPZ
SDF
SDG
SDP
SES
SEW
SPC
SPCBC
SSI
SSK
SSP
SSU
SSZ
T5K
WH7
~G-
ID FETCH-pubmed_primary_392601603
IngestDate Sat Nov 02 12:20:40 EDT 2024
IsPeerReviewed true
IsScholarly true
Keywords Escherichia coli
THETA cycle
Metabolic engineering
Synthetic biology
Tri-carboxylic acid cycle
Carbon fixation
CETCH cycle
Language English
License Copyright © 2024 Elsevier Inc. All rights reserved.
LinkModel OpenURL
MergedId FETCHMERGED-pubmed_primary_392601603
PMID 39260160
ParticipantIDs pubmed_primary_39260160
PublicationCentury 2000
PublicationDate 2024-Sep-06
PublicationDateYYYYMMDD 2024-09-06
PublicationDate_xml – month: 09
  year: 2024
  text: 2024-Sep-06
  day: 06
PublicationDecade 2020
PublicationPlace United States
PublicationPlace_xml – name: United States
PublicationTitle Bioorganic chemistry
PublicationTitleAlternate Bioorg Chem
PublicationYear 2024
SSID ssj0011476
Score 4.6277494
SecondaryResourceType review_article
Snippet In most organisms, the tri-carboxylic acid cycle (TCA cycle) is an essential metabolic system that is involved in both energy generation and carbon metabolism....
SourceID pubmed
SourceType Index Database
StartPage 107774
Title Synthetic biology of metabolic cycles for Enhanced CO 2 capture and Sequestration
URI https://www.ncbi.nlm.nih.gov/pubmed/39260160
Volume 153
hasFullText 1
inHoldings 1
isFullTextHit
isPrint
link http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnZ3dS8MwEMAPnQ_6Irr5rSMP4suotGm6ro-jTIaoUzdhbyP9GO5h7RgV2f56L0nTdeJAfQkhKaG9H81de5c7gGsXbVTWbAWGF-HbxCLOsUcdg9KxSeOWG9sqQPap2X1j90NnWCp0IU6XZMFtuPzxXMl_qOIYchWnZP9AtlgUB7CPfLFFwtj-inF_kaD9JlKu6lxK0lueIViRuzpciJA3GUjYSd6Vq9_vNWgj5LPCcdCPpWaYrwhpF-8kVSWfcCFdFa4we9NPPolUbPZjyjO-LP89oEyGR-W5p9WOZ3qmgfrLXNsSHbu0qeEXoqtK6ZRkOptKoaJ5JRK6mCt1UgT56alt2LYtpwI7bf_14blw8VjMFfWj9FXfzHqp3gcHsJ_b5aSthHwIW3FShVo74Vk6XZAbIiNlpYyrsOtredTgpWBAcgYkHZOCAVEMCDIgmgHxe4SSnAFBBmSNwRHU7zoDv2uoGx3NVD6QkX4E-xgqSZrEp0C8MBy7PAgiu-kxatktxkT0UcjNsWti_wxONixyvnHmAvYUQdewrEuoZPOP-Aotoiyo57L9Arv6Fbo
link.rule.ids 315,783,787
linkProvider Elsevier
openUrl ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=Synthetic+biology+of+metabolic+cycles+for+Enhanced+CO+2+capture+and+Sequestration&rft.jtitle=Bioorganic+chemistry&rft.au=Dowaidar%2C+Moataz&rft.date=2024-09-06&rft.eissn=1090-2120&rft.volume=153&rft.spage=107774&rft_id=info%3Apmid%2F39260160&rft.externalDocID=39260160