Identification and expression analysis of the YABBY gene family in strawberry
YABBY proteins are important transcription factors that regulate morphogenesis and organ development in plants. In order to study the YABBY of strawberry, bioinformatic technique were used to identify the gene families in (diploid) and × (octoploid), and then analyze the sequence characters, phyloge...
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Published in | Sheng wu gong cheng xue bao = Chinese journal of biotechnology Vol. 40; no. 1; p. 104 |
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Main Authors | , , , , , , |
Format | Journal Article |
Language | Chinese |
Published |
China
25.01.2024
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Abstract | YABBY proteins are important transcription factors that regulate morphogenesis and organ development in plants. In order to study the YABBY of strawberry, bioinformatic technique were used to identify the
gene families in
(diploid) and
×
(octoploid), and then analyze the sequence characters, phylogeny and collinearity of the family members. The RNA-seq data and the quantitative reverse transcription-polymerase chain reaction (qRT-PCR) technique were used to assay the expression patterns of the family members. A green fluorescent protein (GFP) was fused with FvYABBYs and transiently expressed in tobacco leaf cells for the subcellular localization. As the results, six
genes and 26
genes were identified from
.
and
.×
, respectively. The
genes were grouped into five clades, and five family members were orthologous with
genes of
. In
.
, all of the
s were basically not expressed not expressed in root and receptacle, while
,
,
and
were highly expressed in leaf, shoot, flower and achene. In
.×
,
,
,
and
were express |
---|---|
AbstractList | YABBY proteins are important transcription factors that regulate morphogenesis and organ development in plants. In order to study the YABBY of strawberry, bioinformatic technique were used to identify the
gene families in
(diploid) and
×
(octoploid), and then analyze the sequence characters, phylogeny and collinearity of the family members. The RNA-seq data and the quantitative reverse transcription-polymerase chain reaction (qRT-PCR) technique were used to assay the expression patterns of the family members. A green fluorescent protein (GFP) was fused with FvYABBYs and transiently expressed in tobacco leaf cells for the subcellular localization. As the results, six
genes and 26
genes were identified from
.
and
.×
, respectively. The
genes were grouped into five clades, and five family members were orthologous with
genes of
. In
.
, all of the
s were basically not expressed not expressed in root and receptacle, while
,
,
and
were highly expressed in leaf, shoot, flower and achene. In
.×
,
,
,
and
were express |
Author | Yu, Tingting Ma, Bojun Wang, Xinyu Yu, Yao Xu, Yiling Chen, Xifeng Shen, Shurong |
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Keywords | expression pattern YABBY gene family subcellular localization strawberry sequence analysis |
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Snippet | YABBY proteins are important transcription factors that regulate morphogenesis and organ development in plants. In order to study the YABBY of strawberry,... |
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Title | Identification and expression analysis of the YABBY gene family in strawberry |
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