SAR and QSAR modeling of a large collection of LD 50 rat acute oral toxicity data

• Published in: Journal of cheminformatics Vol. 11; no. 1; p. 58
• Main Authors: Gadaleta, Domenico, Vuković, Kristijan, Toma, Cosimo, Lavado, Giovanna J, Karmaus, Agnes L, Mansouri, Kamel, Kleinstreuer, Nicole C, Benfenati, Emilio, Roncaglioni, Alessandra
• Format: Journal Article
• Language: English
• Published: England 30.08.2019
• Subjects: LD50; Computational toxicology; Acute rat oral toxicity; Integrated modeling; (Q)SAR
• ISSN: 1758-2946

The median lethal dose for rodent oral acute toxicity (LD50) is a standard piece of information required to categorize chemicals in terms of the potential hazard posed to human health after acute exposure. The exclusive use of in vivo testing is limited by the time and costs required for performing experiments and by the need to sacrifice a number of animals. (Quantitative) structure-activity relationships [(Q)SAR] proved a valid alternative to reduce and assist in vivo assays for assessing acute toxicological hazard. In the framework of a new international collaborative project, the NTP Interagency Center for the Evaluation of Alternative Toxicological Methods and the U.S. Environmental Protection Agency's National Center for Computational Toxicology compiled a large database of rat acute oral LD50 data, with the aim of supporting the development of new computational models for predicting five regulatory relevant acute toxicity endpoints. In this article, a series of regression and classification computational models were developed by employing different statistical and knowledge-based methodologies. External validation was performed to demonstrate the real-life predictability of models. Integrated modeling was then applied to improve performance of single models. Statistical results confirmed the relevance of developed models in regulatory frameworks, and confirmed the effectiveness of integrated modeling. The best integrated strategies reached RMSEs lower than 0.50 and the best classification models reached balanced accuracies over 0.70 for multi-class and over 0.80 for binary endpoints. Computed predictions will be hosted on the EPA's Chemistry Dashboard and made freely available to the scientific community.