Spike-by-Spike Frequency Analysis of Amperometry Traces Provides Statistical Validation of Observations in the Time Domain

• Published in: arXiv.org
• Main Authors: Krishnan, Jeyashree, Lian, Zeyu, Oomen, Pieter E, He, Xiulan, Majdi, Soodabeh, Schuppert, Andreas, Ewing, Andrew
• Format: Paper
• Language: English
• Published: Ithaca Cornell University Library, arXiv.org 06.02.2023
• Subjects: Electrical measurement; Fast Fourier transformations; Fourier transforms; Frequency analysis; Frequency domain analysis; Open source software; Signal processing; Time domain analysis
• ISSN: 2331-8422

Amperometry is a commonly used electrochemical method for studying the process of exocytosis in real-time. Given the high precision of recording that amperometry procedures offer, the volume of data generated can span over several hundreds of megabytes to a few gigabytes and therefore necessitates systematic and reproducible methods for analysis. Though the spike characteristics of amperometry traces in the time domain hold information about the dynamics of exocytosis, these biochemical signals are, more often than not, characterized by time-varying signal properties. Such signals with time-variant properties may occur at different frequencies and therefore analyzing them in the frequency domain may provide statistical validation for observations already established in the time domain. This necessitates the use of time-variant, frequency-selective signal processing methods as well, which can adeptly quantify the dominant or mean frequencies in the signal. The Fast Fourier Transform (FFT) is a well-established computational tool that is commonly used to find the frequency components of a signal buried in noise. In this work, we outline a method for spike-based frequency analysis of amperometry traces using FFT that also provides statistical validation of observations on spike characteristics in the time domain. We demonstrate the method by utilizing simulated signals and by subsequently testing it on diverse amperometry datasets generated from different experiments with various chemical stimulations. To our knowledge, this is the first fully automated open-source tool available dedicated to the analysis of spikes extracted from amperometry signals in the frequency domain.