DNA replication fork speed underlies cell fate changes and promotes reprogramming
Totipotency emerges in early embryogenesis, but its molecular underpinnings remain poorly characterized. In the present study, we employed DNA fiber analysis to investigate how pluripotent stem cells are reprogrammed into totipotent-like 2-cell-like cells (2CLCs). We show that totipotent cells of th...
Saved in:
Published in | Nature genetics Vol. 54; no. 3; pp. 318 - 4 |
---|---|
Main Authors | , , , , , , , , , , , , , , , , , , |
Format | Journal Article |
Language | English |
Published |
New York
Nature Publishing Group
01.03.2022
|
Subjects | |
Online Access | Get full text |
Cover
Loading…
Abstract | Totipotency emerges in early embryogenesis, but its molecular underpinnings remain poorly characterized. In the present study, we employed DNA fiber analysis to investigate how pluripotent stem cells are reprogrammed into totipotent-like 2-cell-like cells (2CLCs). We show that totipotent cells of the early mouse embryo have slow DNA replication fork speed and that 2CLCs recapitulate this feature, suggesting that fork speed underlies the transition to a totipotent-like state. 2CLCs emerge concomitant with DNA replication and display changes in replication timing (RT), particularly during the early S-phase. RT changes occur prior to 2CLC emergence, suggesting that RT may predispose to gene expression changes and consequent reprogramming of cell fate. Slowing down replication fork speed experimentally induces 2CLCs. In vivo, slowing fork speed improves the reprogramming efficiency of somatic cell nuclear transfer. Our data suggest that fork speed regulates cellular plasticity and that remodeling of replication features leads to changes in cell fate and reprogramming. |
---|---|
AbstractList | Totipotency emerges in early embryogenesis, but its molecular underpinnings remain poorly characterized. In the present study, we employed DNA fiber analysis to investigate how pluripotent stem cells are reprogrammed into totipotent-like 2-cell-like cells (2CLCs). We show that totipotent cells of the early mouse embryo have slow DNA replication fork speed and that 2CLCs recapitulate this feature, suggesting that fork speed underlies the transition to a totipotent-like state. 2CLCs emerge concomitant with DNA replication and display changes in replication timing (RT), particularly during the early S-phase. RT changes occur prior to 2CLC emergence, suggesting that RT may predispose to gene expression changes and consequent reprogramming of cell fate. Slowing down replication fork speed experimentally induces 2CLCs. In vivo, slowing fork speed improves the reprogramming efficiency of somatic cell nuclear transfer. Our data suggest that fork speed regulates cellular plasticity and that remodeling of replication features leads to changes in cell fate and reprogramming. |
Author | Pontabry, Julien Fiorentino, Jonathan Pascualli, Paola Y Arguello Ji, Fei Ruiz-Morales, Elias R Whetstine, Johnathan R Nakatani, Tsunetoshi Sadreyev, Ruslan I Altamirano-Pacheco, Luis Scialdone, Antonio Torres-Padilla, Maria-Elena Tokoro, Mikiko Mahammadov, Elmir Yamagata, Kazuo Hatano, Yu Lin, Jiangwei Ettinger, Andreas Chakraborty, Damayanti Van Rechem, Capucine |
Author_xml | – sequence: 1 givenname: Tsunetoshi surname: Nakatani fullname: Nakatani, Tsunetoshi – sequence: 2 givenname: Jiangwei surname: Lin fullname: Lin, Jiangwei – sequence: 3 givenname: Fei surname: Ji fullname: Ji, Fei – sequence: 4 givenname: Andreas surname: Ettinger fullname: Ettinger, Andreas – sequence: 5 givenname: Julien surname: Pontabry fullname: Pontabry, Julien – sequence: 6 givenname: Mikiko surname: Tokoro fullname: Tokoro, Mikiko – sequence: 7 givenname: Luis surname: Altamirano-Pacheco fullname: Altamirano-Pacheco, Luis – sequence: 8 givenname: Jonathan surname: Fiorentino fullname: Fiorentino, Jonathan – sequence: 9 givenname: Elmir surname: Mahammadov fullname: Mahammadov, Elmir – sequence: 10 givenname: Yu surname: Hatano fullname: Hatano, Yu – sequence: 11 givenname: Capucine surname: Van Rechem fullname: Van Rechem, Capucine – sequence: 12 givenname: Damayanti surname: Chakraborty fullname: Chakraborty, Damayanti – sequence: 13 givenname: Elias surname: Ruiz-Morales middlename: R fullname: Ruiz-Morales, Elias R – sequence: 14 givenname: Paola surname: Pascualli middlename: Y Arguello fullname: Pascualli, Paola Y Arguello – sequence: 15 givenname: Antonio surname: Scialdone fullname: Scialdone, Antonio – sequence: 16 givenname: Kazuo surname: Yamagata fullname: Yamagata, Kazuo – sequence: 17 givenname: Johnathan surname: Whetstine middlename: R fullname: Whetstine, Johnathan R – sequence: 18 givenname: Ruslan surname: Sadreyev middlename: I fullname: Sadreyev, Ruslan I – sequence: 19 givenname: Maria-Elena surname: Torres-Padilla fullname: Torres-Padilla, Maria-Elena |
BookMark | eNqNi7tqwzAUhkVwIE7TF8gk6KzmHFtWtJZe6BQIdDfCPnbtyJIj2dDHr4Y-QKf_9v17ljnviLEjwjNCqU9RYqW1gKIQgFAo8bNhOVZSCTyjzpIHhUJCqXZsH-MIgFKCztn17fLCA812aMwyeMc7H248zkQtX11LwQ4UeUPW8s4sxJtv4_rUGNfyOfjJLymkf_B9MNM0uP7Atp2xkR7_9IE9fbx_vX6KxNxXiks9-jW4NNWFkiBRIVbl_6hfYXRILg |
ContentType | Journal Article |
Copyright | Copyright Nature Publishing Group Mar 2022 |
Copyright_xml | – notice: Copyright Nature Publishing Group Mar 2022 |
DBID | 3V. 7QL 7QP 7QR 7SS 7T7 7TK 7TM 7U9 7X7 7XB 88A 88E 8AO 8C1 8FD 8FE 8FH 8FI 8FJ 8FK 8G5 ABUWG AFKRA AZQEC BBNVY BENPR BHPHI C1K CCPQU DWQXO FR3 FYUFA GHDGH GNUQQ GUQSH H94 HCIFZ K9. LK8 M0S M1P M2O M7N M7P MBDVC P64 PQEST PQQKQ PQUKI PRINS Q9U RC3 |
DOI | 10.1038/s41588-022-01026-x |
DatabaseName | ProQuest Central (Corporate) Bacteriology Abstracts (Microbiology B) Calcium & Calcified Tissue Abstracts Chemoreception Abstracts Entomology Abstracts (Full archive) Industrial and Applied Microbiology Abstracts (Microbiology A) Neurosciences Abstracts Nucleic Acids Abstracts Virology and AIDS Abstracts ProQuest Health & Medical Collection ProQuest Central (purchase pre-March 2016) Biology Database (Alumni Edition) Medical Database (Alumni Edition) ProQuest Pharma Collection ProQuest Public Health Database Technology Research Database ProQuest SciTech Collection ProQuest Natural Science Collection Hospital Premium Collection Hospital Premium Collection (Alumni Edition) ProQuest Central (Alumni) (purchase pre-March 2016) Research Library (Alumni Edition) ProQuest Central (Alumni) ProQuest Central ProQuest Central Essentials Biological Science Collection AUTh Library subscriptions: ProQuest Central ProQuest Natural Science Collection Environmental Sciences and Pollution Management ProQuest One Community College ProQuest Central Engineering Research Database Health Research Premium Collection Health Research Premium Collection (Alumni) ProQuest Central Student Research Library Prep AIDS and Cancer Research Abstracts SciTech Premium Collection ProQuest Health & Medical Complete (Alumni) Biological Sciences Health & Medical Collection (Alumni Edition) Medical Database ProQuest Research Library Algology Mycology and Protozoology Abstracts (Microbiology C) Biological Science Database Research Library (Corporate) Biotechnology and BioEngineering Abstracts ProQuest One Academic Eastern Edition (DO NOT USE) ProQuest One Academic ProQuest One Academic UKI Edition ProQuest Central China ProQuest Central Basic Genetics Abstracts |
DatabaseTitle | Research Library Prep ProQuest Central Student ProQuest Central Essentials Nucleic Acids Abstracts SciTech Premium Collection ProQuest Central China Environmental Sciences and Pollution Management Health Research Premium Collection Natural Science Collection Biological Science Collection Chemoreception Abstracts Industrial and Applied Microbiology Abstracts (Microbiology A) ProQuest Medical Library (Alumni) Virology and AIDS Abstracts ProQuest Biological Science Collection ProQuest One Academic Eastern Edition ProQuest Hospital Collection Health Research Premium Collection (Alumni) Biological Science Database Neurosciences Abstracts ProQuest Hospital Collection (Alumni) Biotechnology and BioEngineering Abstracts Entomology Abstracts ProQuest Health & Medical Complete ProQuest One Academic UKI Edition Engineering Research Database ProQuest One Academic Calcium & Calcified Tissue Abstracts Technology Research Database ProQuest Health & Medical Complete (Alumni) ProQuest Central (Alumni Edition) ProQuest One Community College Research Library (Alumni Edition) ProQuest Natural Science Collection ProQuest Pharma Collection ProQuest Biology Journals (Alumni Edition) ProQuest Central Genetics Abstracts Health and Medicine Complete (Alumni Edition) ProQuest Central Korea Bacteriology Abstracts (Microbiology B) Algology Mycology and Protozoology Abstracts (Microbiology C) AIDS and Cancer Research Abstracts ProQuest Research Library ProQuest Public Health ProQuest Central Basic ProQuest SciTech Collection ProQuest Medical Library ProQuest Central (Alumni) |
DatabaseTitleList | Research Library Prep |
Database_xml | – sequence: 1 dbid: BENPR name: AUTh Library subscriptions: ProQuest Central url: https://www.proquest.com/central sourceTypes: Aggregation Database |
DeliveryMethod | fulltext_linktorsrc |
Discipline | Biology |
EISSN | 1546-1718 |
EndPage | 4 |
GroupedDBID | --- -DZ -~X 0R~ 123 29M 2FS 36B 39C 3V. 4.4 53G 5BI 5RE 70F 7QL 7QP 7QR 7SS 7T7 7TK 7TM 7U9 7X7 7XB 85S 88A 88E 8AO 8C1 8FD 8FE 8FH 8FI 8FJ 8FK 8G5 8R4 8R5 AAEEF AAHBH AARCD AAZLF ABCQX ABJNI ABLJU ABOCM ABUWG ABVXF ACGFO ACGFS ACIWK ACMJI ACNCT ACPRK ADBBV ADFRT AENEX AFBBN AFKRA AFRAH AFSHS AGAYW AGEZK AGHTU AHBCP AHMBA AHOSX AHSBF AIBTJ ALFFA ALIPV ALMA_UNASSIGNED_HOLDINGS AMTXH ARMCB ASPBG AVWKF AXYYD AZFZN AZQEC BBNVY BENPR BHPHI BKKNO BPHCQ BVXVI C1K CCPQU CS3 DU5 DWQXO EAP EBS EE. EXGXG F5P FEDTE FQGFK FR3 FSGXE FYUFA GNUQQ GUQSH GX1 H94 HCIFZ HMCUK HVGLF HZ~ IAO IH2 IHR INH INR IOV ISR K9. L7B LK8 M1P M2O M7N M7P MBDVC N9A NNMJJ P2P P64 PQEST PQQKQ PQUKI PRINS PROAC PSQYO Q2X Q9U RC3 RNT RNTTT SHXYY SIXXV SJN SNYQT TAOOD TBHMF TDRGL TN5 TSG UKHRP VQA ~KM |
ID | FETCH-proquest_journals_26404161153 |
IEDL.DBID | BENPR |
ISSN | 1061-4036 |
IngestDate | Tue Sep 24 23:30:30 EDT 2024 |
IsPeerReviewed | true |
IsScholarly | true |
Issue | 3 |
Language | English |
LinkModel | DirectLink |
MergedId | FETCHMERGED-proquest_journals_26404161153 |
PQID | 2640416115 |
PQPubID | 33429 |
ParticipantIDs | proquest_journals_2640416115 |
PublicationCentury | 2000 |
PublicationDate | 20220301 |
PublicationDateYYYYMMDD | 2022-03-01 |
PublicationDate_xml | – month: 03 year: 2022 text: 20220301 day: 01 |
PublicationDecade | 2020 |
PublicationPlace | New York |
PublicationPlace_xml | – name: New York |
PublicationTitle | Nature genetics |
PublicationYear | 2022 |
Publisher | Nature Publishing Group |
Publisher_xml | – name: Nature Publishing Group |
SSID | ssj0014408 |
Score | 4.851218 |
Snippet | Totipotency emerges in early embryogenesis, but its molecular underpinnings remain poorly characterized. In the present study, we employed DNA fiber analysis... |
SourceID | proquest |
SourceType | Aggregation Database |
StartPage | 318 |
SubjectTerms | Cell cycle Cell fate Deoxyribonucleic acid DNA DNA biosynthesis Embryogenesis Embryonic growth stage Embryos Fabric analysis Gene expression Kinases Nuclear transfer Plastic foam Pluripotency Replication Somatic cell nuclear transfer Stem cell transplantation Stem cells |
Title | DNA replication fork speed underlies cell fate changes and promotes reprogramming |
URI | https://www.proquest.com/docview/2640416115/abstract/ |
Volume | 54 |
hasFullText | 1 |
inHoldings | 1 |
isFullTextHit | |
isPrint | |
link | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwfV1NS8NAEB3aBsGL-InWWhb0uuSjmzQ9SVtbimBQUcitZLPJRUzTJIL-e2c2ST0IvQRCYAk7y7zZeW9mAO7GMvUjFftcSCfiInIVR1AQXMap7UWOTCa6Zf5T4K3exWPohh1YtbUwJKtsfaJ21GoTU47cROC2KBi3XTOSlAWIK_M-33KaH0U8azNMowuGYwsibI3ZInh-3TEKNFlZM58e3ZmIsuzXJee-WSKI4XkhXTt1WPP49z_HrNFmeQxHTZjIprVdT6CTZKdwUA-O_DmDl4dgyopkxz0zDD0_WJkjFDGqCiswsiwZJeVZisEkq8t7SxZliuVagIcv1M9Si7M-Eb7O4Xa5eJuvePtH6-aUleu_PRldQC_bZMklMItuDCMpZKJcoZQ_iandk-eiQZTlxekVDPat1N__-RoOHb1RpMIaQK8qvpIbhOVKDqE7Dsf49Of2EIzpcjYLho0VfgF_BJVW |
link.rule.ids | 315,786,790,12083,12250,21416,27957,27958,31754,33301,33779,43345,43614,43840,74102,74371,74659 |
linkProvider | ProQuest |
linkToHtml | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwfV1NS8NAEB20InoRP9FadUGvS9Nms01PUtQStQ0IFXIL2WxykaYxW0H_vTObtB6EHkMghNll3puZNzMAdwOV-4lOfS5UP-Ei8TRHUBBcpXlPJn2VDe3I_Gkog3fxEnlRk3Azjaxy5ROto9aLlHLkXQRuh8h4z7svPzltjaLqarNCYxt2hOsKkvQNonXARXXLuhVOUpxEZcp23Wbudw0CF94R0rLTVDXJv_85Y4sw40M4aKghG9VneQRbWXEMu_WyyJ8TeHsMR6zK1vVmhnTzg5kS4YdRJ1iFbNIwSsSzHAkkq1t6DUsKzUorusMHmmFpBVlzhKxTuB0_zR4CvvqjuLlZJv6zg3sGrWJRZOfAHIoSXCVUpj2htT9MacST9PAQtCPT_AI6m77U3vz6BvaC2XQST57D10vY71ujkQqrA61l9ZVdISwv1bW1_S9EEo_z |
linkToPdf | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwfV1NS8NAEB20ongRP9FadUGvS9I02aYnKdZQv4KCQm4hm91cxDQmFfTfO7PZ1oPQ4xJYwuwy783OmxmAq6EswkzlIfell3E_CxRHUPC5zIu-yDypR6Zl_lMspm_-fRIkVv_UWFnlwicaR61mOb2ROwjcLpHxfuAUVhbxPImuq09OE6Qo02rHaazDBqKkS9MMhsky-KIcZlsWJyhmopRlty05D50GQQzvC-naqcOa4N__HLNBm2gXdixNZOP2XPdgTZf7sNkOjvw5gJdJPGa1XuaeGVLPd9ZUCEWMqsJqZJYNo0d5ViCZZG15b8OyUrHKCPBwQf0sjTjrA-HrEC6j29ebKV_8UWpvWZP-2WRwBJ1yVupjYC5FDAPpS60CX6lwlFO7JxHggShX5MUJ9Fbt1F39-QK20Ozp4138cArbnrEZCbJ60JnXX_oMEXouz43pfwFpZZQf |
openUrl | ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=DNA+replication+fork+speed+underlies+cell+fate+changes+and+promotes+reprogramming&rft.jtitle=Nature+genetics&rft.au=Nakatani%2C+Tsunetoshi&rft.au=Lin%2C+Jiangwei&rft.au=Ji%2C+Fei&rft.au=Ettinger%2C+Andreas&rft.date=2022-03-01&rft.pub=Nature+Publishing+Group&rft.issn=1061-4036&rft.eissn=1546-1718&rft.volume=54&rft.issue=3&rft.spage=318&rft.epage=4&rft_id=info:doi/10.1038%2Fs41588-022-01026-x&rft.externalDBID=HAS_PDF_LINK |
thumbnail_l | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=1061-4036&client=summon |
thumbnail_m | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=1061-4036&client=summon |
thumbnail_s | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=1061-4036&client=summon |