X-Ray Absorption Spectroscopy As a Probe of Microbial Sulfur Biochemistry: the Nature of Bacterial Sulfur Globules Revisited

The chemical nature of the sulfur in bacterial sulfur globules has been the subject of controversy for a number of years. Sulfur K-edge X-ray absorption spectroscopy (XAS) is a powerful technique for probing the chemical forms of sulfur in situ, but two groups have used it with very different conclu...

Full description

Saved in:
Bibliographic Details
Published inJournal of bacteriology Vol. 190; no. 19
Main Authors George, G.N., Gnida, M., Bazylinski, D.A., Prince, R.C., Pickering, I.J.
Format Journal Article
LanguageEnglish
Published United States 18.05.2009
Subjects
Online AccessGet full text

Cover

Loading…
Abstract The chemical nature of the sulfur in bacterial sulfur globules has been the subject of controversy for a number of years. Sulfur K-edge X-ray absorption spectroscopy (XAS) is a powerful technique for probing the chemical forms of sulfur in situ, but two groups have used it with very different conclusions. The root of the controversy lies with the different detection strategies used by the two groups, which result in very different spectra. This paper seeks to resolve the controversy. We experimentally demonstrate that the use of transmittance detection for sulfur K-edge XAS measurements is highly prone to spectroscopic distortions and that much of the published work on sulfur bacteria is very likely based on distorted data. We also demonstrate that all three detection methods used for X-ray absorption experiments yield essentially identical spectra when the measurements are carried out under conditions where no experimental distortions are expected. Finally, we turn to the original question--the chemical nature of bacterial sulfur. We examine isolated sulfur globules of Allochromatium vinosum and intact cells of a strain of magnetotactic coccus and show that XAS indicates the presence of a chemical form of sulfur resembling S{sub 8}.
AbstractList The chemical nature of the sulfur in bacterial sulfur globules has been the subject of controversy for a number of years. Sulfur K-edge X-ray absorption spectroscopy (XAS) is a powerful technique for probing the chemical forms of sulfur in situ, but two groups have used it with very different conclusions. The root of the controversy lies with the different detection strategies used by the two groups, which result in very different spectra. This paper seeks to resolve the controversy. We experimentally demonstrate that the use of transmittance detection for sulfur K-edge XAS measurements is highly prone to spectroscopic distortions and that much of the published work on sulfur bacteria is very likely based on distorted data. We also demonstrate that all three detection methods used for X-ray absorption experiments yield essentially identical spectra when the measurements are carried out under conditions where no experimental distortions are expected. Finally, we turn to the original question--the chemical nature of bacterial sulfur. We examine isolated sulfur globules of Allochromatium vinosum and intact cells of a strain of magnetotactic coccus and show that XAS indicates the presence of a chemical form of sulfur resembling S{sub 8}.
Author George, G.N.
Pickering, I.J.
Bazylinski, D.A.
Gnida, M.
Prince, R.C.
Author_xml – sequence: 1
  fullname: George, G.N.
– sequence: 2
  fullname: Gnida, M.
– sequence: 3
  fullname: Bazylinski, D.A.
– sequence: 4
  fullname: Prince, R.C.
– sequence: 5
  fullname: Pickering, I.J.
BackLink https://www.osti.gov/biblio/953158$$D View this record in Osti.gov
BookMark eNqNzs1qAjEUBeBQFBxr3-H6AAOJY8Bxp9KfjaWMXXQnmfQOE0lzh9xMQfDhHYqLLl2dw-FbnKkYBQr4IDIly1WudSFHIpNyofJSlcVETJlPUqrlUi8ycfnKK3OGTc0Uu-QowKFDmyKxpW7YGQx8RKoRqIG9s0N1xsOh900fYevItvjjOMXzGlKL8G5SH__w1tiE8R9-9VT3Hhkq_HXsEn7PxLgxnvHplo9i_vL8uXvLiZM7sh2MbS2FMDw6lrpQelXcY64j71Fh
ContentType Journal Article
CorporateAuthor Stanford Linear Accelerator Center (SLAC)
CorporateAuthor_xml – name: Stanford Linear Accelerator Center (SLAC)
DBID OTOTI
DatabaseName OSTI.GOV
DatabaseTitleList
DeliveryMethod fulltext_linktorsrc
Discipline Biology
EISSN 1098-5530
ExternalDocumentID 953158
GroupedDBID ---
-DZ
-~X
.55
0R~
18M
29J
2WC
39C
4.4
53G
5GY
5RE
5VS
79B
85S
AAUGY
ABPPZ
ABPTK
ABTAH
ACGFO
ACGOD
ACNCT
ACPRK
ADBBV
AENEX
AFRAH
AGCDD
AGVNZ
ALMA_UNASSIGNED_HOLDINGS
AOIJS
BAWUL
BKOMP
BTFSW
C1A
CJ0
CS3
DIK
DU5
E3Z
EBS
EJD
F5P
FRP
GX1
H13
HYE
HZ~
IH2
KQ8
L7B
MVM
O9-
OK1
OTOTI
P-S
P2P
PQEST
PQQKQ
RHF
RHI
RNS
RPM
RSF
RXW
TAE
TAF
TR2
UCJ
UHB
UKR
UPT
VQA
W8F
WH7
WOQ
X7M
YQT
YR2
YZZ
ZA5
ZCA
ZY4
~02
~KM
ID FETCH-osti_scitechconnect_9531583
ISSN 0021-9193
IngestDate Thu May 18 22:32:25 EDT 2023
IsPeerReviewed true
IsScholarly true
Issue 19
Language English
LinkModel OpenURL
MergedId FETCHMERGED-osti_scitechconnect_9531583
Notes SLAC-REPRINT-2009-126
USDOE
AC02-76SF00515
ParticipantIDs osti_scitechconnect_953158
PublicationCentury 2000
PublicationDate 2009-05-18
PublicationDateYYYYMMDD 2009-05-18
PublicationDate_xml – month: 05
  year: 2009
  text: 2009-05-18
  day: 18
PublicationDecade 2000
PublicationPlace United States
PublicationPlace_xml – name: United States
PublicationTitle Journal of bacteriology
PublicationYear 2009
SSID ssj0014452
Score 3.9235463
Snippet The chemical nature of the sulfur in bacterial sulfur globules has been the subject of controversy for a number of years. Sulfur K-edge X-ray absorption...
SourceID osti
SourceType Open Access Repository
SubjectTerms ABSORPTION SPECTROSCOPY
BACTERIA
BASIC BIOLOGICAL SCIENCES
BIOCHEMISTRY
CHEMICAL STATE
DETECTION
Other,BIO, CHEM
SULFUR
X-RAY SPECTROSCOPY
Title X-Ray Absorption Spectroscopy As a Probe of Microbial Sulfur Biochemistry: the Nature of Bacterial Sulfur Globules Revisited
URI https://www.osti.gov/biblio/953158
Volume 190
hasFullText 1
inHoldings 1
isFullTextHit
isPrint
link http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnZ3da8IwEMDDJgz2MvbJ5j7IYG_Sgppqu7fqNtyGMsSBb9KmCQjSDmsflP3xu0tsWtkH215auZ7R9qeX45K7I-TGaUcBzMqR1eAutxi2NgncetNiQjLW4J6UEvOd-4NW75U9jZ1x0ehSZZcsQpuvvswr-Q9VkAFXzJL9A1kzKAjgNfCFIxCG468Yj61hsKz5YZrM1__8N9XUBlNNQJ7WAkwECFVYoD9VJZew-Ec2k9kcu1DyvNtbvrtjoMp8onpHV3Eu1HFbRjYTqVpNSE1S1Ge_NtTv3AjX68i7isHbA9tI42mkfNe-EXWC1XJmmmnf2b658oKrAmqIod21N4IVHq6zl-2r3hFS100RbaFtLpY0xe5FG0ZZNxHNf31eMV2ZTYQemA_H3SbbcEJv-PHZLB8x5qzLxOtPg_k2AYtZ8hxG-2Rv_Wior_kdkC0RH5Id3QR0eUTeFUVaUKRlitRPaUAVRZpIaihSjYWWKd5SYEg1Q1Q2DHPlnCE1DI_J9cP9qNuz8ItPwB3Cmr4cNz_xxUTfevOEVOIkFqeEStEKWSQDgfZVcC9kbhg12hyUIqxYdEaq349T_eniOdktQF6QymKeiUvwwxbhlXrmH0VOQI8
link.rule.ids 230,315,783,787,888
linkProvider Flying Publisher
openUrl ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=X-Ray+Absorption+Spectroscopy+As+a+Probe+of+Microbial+Sulfur+Biochemistry%3A+the+Nature+of+Bacterial+Sulfur+Globules+Revisited&rft.jtitle=Journal+of+bacteriology&rft.au=George%2C+G.N.&rft.au=Gnida%2C+M.&rft.au=Bazylinski%2C+D.A.&rft.au=Prince%2C+R.C.&rft.date=2009-05-18&rft.issn=0021-9193&rft.eissn=1098-5530&rft.volume=190&rft.issue=19&rft.externalDocID=953158
thumbnail_l http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=0021-9193&client=summon
thumbnail_m http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=0021-9193&client=summon
thumbnail_s http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=0021-9193&client=summon