Space-efficient read indexing and retrieval based on compressed de Bruijn graphs

We introduce a short-read indexing and retrieval scheme based on a compressed de Bruijn graph data structure.

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Bibliographic Details
Published in2013 IEEE 3rd International Conference on Computational Advances in Bio and medical Sciences (ICCABS) p. 1
Main Authors Almutairy, Meznah, Fish, Jordan, Brown, C. Titus
Format Conference Proceeding
LanguageEnglish
Published IEEE 01.06.2013
Subjects
Assembly
Bioinformatics
Computer science
Data structures
Electronic mail
Indexing
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Summary:We introduce a short-read indexing and retrieval scheme based on a compressed de Bruijn graph data structure.
DOI:10.1109/ICCABS.2013.6629233