Comparative NAMD benchmarking on BlueGene/P

• Published in: 2012 Proceedings of the 35th International Convention MIPRO pp. 319 - 321
• Main Authors: Poghosyan, A. H., Arsenyan, L. H., Astsatryan, H. V.
• Format: Conference Proceeding
• Language: English
• Published: IEEE 01.05.2012
• Subjects: Benchmark testing; Biological system modeling; Computational modeling; Electric breakdown; Physics; Program processors; Supercomputers

Series of benchmarking of 210K atoms of inverse micelle/oil/water system have been carried out on Bulgarian BlueGene/P at Bulgarian Supercomputing Centre and on computational resources of Armenian National Grid Initiative (ArmGrid). The experiments show that the linear increase of speed of calculati...