Structural basis of initial RNA polymerase II transcription Initial RNA Pol II transcription
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| Published in | The EMBO journal Vol. 30; no. 23; pp. 4755 - 4763 |
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| Main Authors | , , |
| Format | Journal Article |
| Language | English |
| Published |
30.11.2011
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| Online Access | Get full text |
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| Author | Cheung, Alan C M Cramer, Patrick Sainsbury, Sarah |
|---|---|
| Author_xml | – sequence: 1 givenname: Alan C M surname: Cheung fullname: Cheung, Alan C M organization: Gene Center and Department of Biochemistry, Center for Integrated Protein Science Munich (CIPSM), Ludwig-Maximilians-Universität München; Munich Germany – sequence: 2 givenname: Sarah surname: Sainsbury fullname: Sainsbury, Sarah organization: Gene Center and Department of Biochemistry, Center for Integrated Protein Science Munich (CIPSM), Ludwig-Maximilians-Universität München; Munich Germany – sequence: 3 givenname: Patrick surname: Cramer fullname: Cramer, Patrick organization: Gene Center and Department of Biochemistry, Center for Integrated Protein Science Munich (CIPSM), Ludwig-Maximilians-Universität München; Munich Germany |
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| Cites_doi | 10.1126/science.1059495 10.1107/S0021889807021206 10.1038/nature09573 10.1038/nature08548 10.1107/S0907444909052925 10.1126/science.1135400 10.1016/j.molcel.2009.06.002 10.1107/S0907444994003112 10.1074/jbc.M413038200 10.1073/pnas.1016691108 10.1126/science.1206629 10.1107/S0907444909047337 10.1126/science.1090839 10.1126/science.281.5375.424 10.1126/science.1182015 10.1074/jbc.M111.247080 10.1016/j.jmb.2007.03.041 10.1038/nature05931 10.1093/nar/gki583 10.1107/S0907444904019158 10.1016/j.molcel.2008.04.023 10.1038/nsmb.1732 10.1016/j.molcel.2004.11.040 10.1016/j.cell.2006.11.023 10.1016/S0021-9258(18)48127-6 10.1038/nature09785 10.1093/nar/gkp601 10.1016/0968-0004(96)10050-5 10.1016/S0021-9258(18)34669-6 10.1126/science.1069595 10.1074/jbc.C400316200 |
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| References | Emsley (10.1038/emboj.2011.396-BIB0008|embj2011396-citation-0008) 2004; 60 Zhang (10.1038/emboj.2011.396-BIB0032|embj2011396-citation-0032) 2005; 33 Zhang (10.1038/emboj.2011.396-BIB0031|embj2011396-citation-0031) 2010; 17 Andrecka (10.1038/emboj.2011.396-BIB0002|embj2011396-citation-0002) 2009; 37 Westover (10.1038/emboj.2011.396-BIB0030|embj2011396-citation-0030) 2004; 303 Sydow (10.1038/emboj.2011.396-BIB0026|embj2011396-citation-0026) 2009; 34 Murakami (10.1038/emboj.2011.396-BIB0022|embj2011396-citation-0022) 2002; 296 Liu (10.1038/emboj.2011.396-BIB0017|embj2011396-citation-0017) 2011; 333 Tagami (10.1038/emboj.2011.396-BIB0027|embj2011396-citation-0027) 2010; 468 Mekler (10.1038/emboj.2011.396-BIB0021|embj2011396-citation-0021) 2011; 286 Kaplan (10.1038/emboj.2011.396-BIB0013|embj2011396-citation-0013) 2008; 30 Kettenberger (10.1038/emboj.2011.396-BIB0015|embj2011396-citation-0015) 2004; 16 Kadesch (10.1038/emboj.2011.396-BIB0012|embj2011396-citation-0012) 1982; 257 Luse (10.1038/emboj.2011.396-BIB0019|embj2011396-citation-0019) 1987; 262 Bricogne (10.1038/emboj.2011.396-BIB0004|embj2011396-citation-0004) 2011 (10.1038/emboj.2011.396-BIB0006|embj2011396-citation-0006) 1994; 50 Cheung (10.1038/emboj.2011.396-BIB0007|embj2011396-citation-0007) 2011; 471 Gnatt (10.1038/emboj.2011.396-BIB0010|embj2011396-citation-0010) 2001; 292 McCoy (10.1038/emboj.2011.396-BIB0020|embj2011396-citation-0020) 2007; 40 Liu (10.1038/emboj.2011.396-BIB0018|embj2011396-citation-0018) 2010; 327 Roeder (10.1038/emboj.2011.396-BIB0024|embj2011396-citation-0024) 1996; 21 Armache (10.1038/emboj.2011.396-BIB0003|embj2011396-citation-0003) 2005; 280 Brueckner (10.1038/emboj.2011.396-BIB0005|embj2011396-citation-0005) 2007; 315 Svetlov (10.1038/emboj.2011.396-BIB0025|embj2011396-citation-0025) 2004; 279 Adams (10.1038/emboj.2011.396-BIB0001|embj2011396-citation-0001) 2010; 66 Wang (10.1038/emboj.2011.396-BIB0029|embj2011396-citation-0029) 2006; 127 Kostrewa (10.1038/emboj.2011.396-BIB0016|embj2011396-citation-0016) 2009; 462 Gleghorn (10.1038/emboj.2011.396-BIB0009|embj2011396-citation-0009) 2011; 108 Kabsch (10.1038/emboj.2011.396-BIB0011|embj2011396-citation-0011) 2010; 66 Nudler (10.1038/emboj.2011.396-BIB0023|embj2011396-citation-0023) 1998; 281 Kennedy (10.1038/emboj.2011.396-BIB0014|embj2011396-citation-0014) 2007; 370 Vassylyev (10.1038/emboj.2011.396-BIB0028|embj2011396-citation-0028) 2007; 448 |
| References_xml | – volume: 292 start-page: 1876 year: 2001 ident: 10.1038/emboj.2011.396-BIB0010|embj2011396-citation-0010 article-title: Structural basis of transcription: an RNA polymerase II elongation complex at 3.3 A resolution publication-title: Science doi: 10.1126/science.1059495 contributor: fullname: Gnatt – volume: 40 start-page: 658 year: 2007 ident: 10.1038/emboj.2011.396-BIB0020|embj2011396-citation-0020 article-title: Phaser crystallographic software publication-title: J Appl Crystallogr doi: 10.1107/S0021889807021206 contributor: fullname: McCoy – volume: 468 start-page: 978 year: 2010 ident: 10.1038/emboj.2011.396-BIB0027|embj2011396-citation-0027 article-title: Crystal structure of bacterial RNA polymerase bound with a transcription inhibitor protein publication-title: Nature doi: 10.1038/nature09573 contributor: fullname: Tagami – volume: 462 start-page: 323 year: 2009 ident: 10.1038/emboj.2011.396-BIB0016|embj2011396-citation-0016 article-title: RNA polymerase II-TFIIB structure and mechanism of transcription initiation publication-title: Nature doi: 10.1038/nature08548 contributor: fullname: Kostrewa – volume: 66 start-page: 213 year: 2010 ident: 10.1038/emboj.2011.396-BIB0001|embj2011396-citation-0001 article-title: PHENIX: a comprehensive Python-based system for macromolecular structure solution publication-title: Acta Crystallogr D Biol Crystallogr doi: 10.1107/S0907444909052925 contributor: fullname: Adams – volume: 315 start-page: 859 year: 2007 ident: 10.1038/emboj.2011.396-BIB0005|embj2011396-citation-0005 article-title: CPD damage recognition by transcribing RNA polymerase II publication-title: Science doi: 10.1126/science.1135400 contributor: fullname: Brueckner – volume: 34 start-page: 710 year: 2009 ident: 10.1038/emboj.2011.396-BIB0026|embj2011396-citation-0026 article-title: Structural basis of transcription: mismatch-specific fidelity mechanisms and paused RNA polymerase II with frayed RNA publication-title: Mol Cell doi: 10.1016/j.molcel.2009.06.002 contributor: fullname: Sydow – volume: 50 start-page: 760 year: 1994 ident: 10.1038/emboj.2011.396-BIB0006|embj2011396-citation-0006 article-title: The CCP4 suite: programs for protein crystallography publication-title: Acta Crystallogr D Biol Crystallogr doi: 10.1107/S0907444994003112 – volume: 280 start-page: 7131 year: 2005 ident: 10.1038/emboj.2011.396-BIB0003|embj2011396-citation-0003 article-title: Structures of complete RNA polymerase II and its subcomplex, Rpb4/7 publication-title: J Biol Chem doi: 10.1074/jbc.M413038200 contributor: fullname: Armache – volume: 108 start-page: 3566 year: 2011 ident: 10.1038/emboj.2011.396-BIB0009|embj2011396-citation-0009 article-title: X-ray crystal structures elucidate the nucleotidyl transfer reaction of transcript initiation using two nucleotides publication-title: Proc Natl Acad Sci USA doi: 10.1073/pnas.1016691108 contributor: fullname: Gleghorn – volume: 333 start-page: 633 year: 2011 ident: 10.1038/emboj.2011.396-BIB0017|embj2011396-citation-0017 article-title: Initiation complex structure and promoter proofreading publication-title: Science doi: 10.1126/science.1206629 contributor: fullname: Liu – volume: 66 start-page: 125 year: 2010 ident: 10.1038/emboj.2011.396-BIB0011|embj2011396-citation-0011 article-title: Xds publication-title: Acta Crystallogr D Biol Crystallogr doi: 10.1107/S0907444909047337 contributor: fullname: Kabsch – volume: 303 start-page: 1014 year: 2004 ident: 10.1038/emboj.2011.396-BIB0030|embj2011396-citation-0030 article-title: Structural basis of transcription: separation of RNA from DNA by RNA polymerase II publication-title: Science doi: 10.1126/science.1090839 contributor: fullname: Westover – volume: 281 start-page: 424 year: 1998 ident: 10.1038/emboj.2011.396-BIB0023|embj2011396-citation-0023 article-title: Spatial organization of transcription elongation complex in Escherichia coli publication-title: Science doi: 10.1126/science.281.5375.424 contributor: fullname: Nudler – volume: 327 start-page: 206 year: 2010 ident: 10.1038/emboj.2011.396-BIB0018|embj2011396-citation-0018 article-title: Structure of an RNA polymerase II-TFIIB complex and the transcription initiation mechanism publication-title: Science doi: 10.1126/science.1182015 contributor: fullname: Liu – volume: 286 start-page: 22600 year: 2011 ident: 10.1038/emboj.2011.396-BIB0021|embj2011396-citation-0021 article-title: A critical role of downstream RNA polymerase-promoter interactions in the formation of initiation complex publication-title: J Biol Chem doi: 10.1074/jbc.M111.247080 contributor: fullname: Mekler – volume: 370 start-page: 256 year: 2007 ident: 10.1038/emboj.2011.396-BIB0014|embj2011396-citation-0014 article-title: Mechanism for de novo RNA synthesis and initiating nucleotide specificity by t7 RNA polymerase publication-title: J Mol Biol doi: 10.1016/j.jmb.2007.03.041 contributor: fullname: Kennedy – volume: 448 start-page: 163 year: 2007 ident: 10.1038/emboj.2011.396-BIB0028|embj2011396-citation-0028 article-title: Structural basis for substrate loading in bacterial RNA polymerase publication-title: Nature doi: 10.1038/nature05931 contributor: fullname: Vassylyev – volume: 33 start-page: 2838 year: 2005 ident: 10.1038/emboj.2011.396-BIB0032|embj2011396-citation-0032 article-title: Mapping of transcription start sites in Saccharomyces cerevisiae using 5′ SAGE publication-title: Nucleic Acids Res doi: 10.1093/nar/gki583 contributor: fullname: Zhang – volume: 60 start-page: 2126 year: 2004 ident: 10.1038/emboj.2011.396-BIB0008|embj2011396-citation-0008 article-title: Coot: model-building tools for molecular graphics publication-title: Acta Crystallogr D Biol Crystallogr doi: 10.1107/S0907444904019158 contributor: fullname: Emsley – volume: 30 start-page: 547 year: 2008 ident: 10.1038/emboj.2011.396-BIB0013|embj2011396-citation-0013 article-title: The RNA polymerase II trigger loop functions in substrate selection and is directly targeted by alpha-amanitin publication-title: Mol Cell doi: 10.1016/j.molcel.2008.04.023 contributor: fullname: Kaplan – volume: 17 start-page: 99 year: 2010 ident: 10.1038/emboj.2011.396-BIB0031|embj2011396-citation-0031 article-title: Role of the RNA polymerase trigger loop in catalysis and pausing publication-title: Nat Struct Mol Biol doi: 10.1038/nsmb.1732 contributor: fullname: Zhang – volume: 16 start-page: 955 year: 2004 ident: 10.1038/emboj.2011.396-BIB0015|embj2011396-citation-0015 article-title: Complete RNA polymerase II elongation complex structure and its interactions with NTP and TFIIS publication-title: Mol Cell doi: 10.1016/j.molcel.2004.11.040 contributor: fullname: Kettenberger – volume: 127 start-page: 941 year: 2006 ident: 10.1038/emboj.2011.396-BIB0029|embj2011396-citation-0029 article-title: Structural basis of transcription: role of the trigger loop in substrate specificity and catalysis publication-title: Cell doi: 10.1016/j.cell.2006.11.023 contributor: fullname: Wang – volume: 262 start-page: 14990 year: 1987 ident: 10.1038/emboj.2011.396-BIB0019|embj2011396-citation-0019 article-title: Abortive initiation by RNA polymerase II in vitro at the adenovirus 2 major late promoter publication-title: J Biol Chem doi: 10.1016/S0021-9258(18)48127-6 contributor: fullname: Luse – volume: 471 start-page: 249 year: 2011 ident: 10.1038/emboj.2011.396-BIB0007|embj2011396-citation-0007 article-title: Structural basis of RNA polymerase II backtracking, arrest and reactivation publication-title: Nature doi: 10.1038/nature09785 contributor: fullname: Cheung – volume: 37 start-page: 5803 year: 2009 ident: 10.1038/emboj.2011.396-BIB0002|embj2011396-citation-0002 article-title: Nano positioning system reveals the course of upstream and nontemplate DNA within the RNA polymerase II elongation complex publication-title: Nucleic Acids Res doi: 10.1093/nar/gkp601 contributor: fullname: Andrecka – year: 2011 ident: 10.1038/emboj.2011.396-BIB0004|embj2011396-citation-0004 publication-title: autoBUSTER contributor: fullname: Bricogne – volume: 21 start-page: 327 year: 1996 ident: 10.1038/emboj.2011.396-BIB0024|embj2011396-citation-0024 article-title: The role of general initiation factors in transcription by RNA polymerase II publication-title: Trends Biochem Sci doi: 10.1016/0968-0004(96)10050-5 contributor: fullname: Roeder – volume: 257 start-page: 5286 year: 1982 ident: 10.1038/emboj.2011.396-BIB0012|embj2011396-citation-0012 article-title: Studies of in vitro transcription by calf thymus RNA polymerase II using a novel duplex DNA template publication-title: J Biol Chem doi: 10.1016/S0021-9258(18)34669-6 contributor: fullname: Kadesch – volume: 296 start-page: 1285 year: 2002 ident: 10.1038/emboj.2011.396-BIB0022|embj2011396-citation-0022 article-title: Structural basis of transcription initiation: an RNA polymerase holoenzyme-DNA complex publication-title: Science doi: 10.1126/science.1069595 contributor: fullname: Murakami – volume: 279 start-page: 38087 year: 2004 ident: 10.1038/emboj.2011.396-BIB0025|embj2011396-citation-0025 article-title: Discrimination against deoxyribonucleotide substrates by bacterial RNA polymerase publication-title: J Biol Chem doi: 10.1074/jbc.C400316200 contributor: fullname: Svetlov |
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