MS/MS-based networking and peptidogenomics guided genome mining revealed the stenothricin gene cluster in Streptomyces roseosporus

• Published in: Journal of antibiotics Vol. 67; no. 1; pp. 99 - 104
• Main Authors: Liu, Wei-Ting, Lamsa, Anne, Wong, Weng Ruh, Boudreau, Paul D, Kersten, Roland, Peng, Yao, Moree, Wilna J, Duggan, Brendan M, Moore, Bradley S, Gerwick, William H, Linington, Roger G, Pogliano, Kit, Dorrestein, Pieter C
• Format: Journal Article
• Language: English
• Published: London Nature Publishing Group UK 01.01.2014; Nature Publishing Group
• Subjects: 631/326/22/1290; 631/92/60; Anti-Bacterial Agents - biosynthesis; Bacteriology; Biomedical and Life Sciences; Bioorganic Chemistry; Biotechnology; Biotechnology - methods; Careers; Data Mining; Genome, Bacterial; Genomics - methods; Glycosylation; Hydrolysis; Life Sciences; Medicinal Chemistry; Microbiology; Microorganisms; Multigene Family; Networking; Organic Chemistry; original-article; Quality of life; Streptomyces - genetics; Tandem Mass Spectrometry - methods; cyclic peptides; mass spectrometry; cytological profiling; metabolic exchange; biosynthesis; BioMAP
• ISSN: 0021-8820; 1881-1469
• DOI: 10.1038/ja.2013.99

Most (75%) of the anti-infectives that save countless lives and enormously improve quality of life originate from microbes found in nature. Herein, we described a global visualization of the detectable molecules produced from a single microorganism, which we define as the ‘molecular network’ of that organism, followed by studies to characterize the cellular effects of antibacterial molecules. We demonstrate that Streptomyces roseosporus produces at least four non-ribosomal peptide synthetase-derived molecular families and their gene subnetworks (daptomycin, arylomycin, napsamycin and stenothricin) were identified with different modes of action. A number of previously unreported analogs involving truncation, glycosylation, hydrolysis and biosynthetic intermediates and/or shunt products were also captured and visualized by creation of a map through MS/MS networking. The diversity of antibacterial compounds produced by S. roseosporus highlights the importance of developing new approaches to characterize the molecular capacity of an organism in a more global manner. This allows one to more deeply interrogate the biosynthetic capacities of microorganisms with the goal to streamline the discovery pipeline for biotechnological applications in agriculture and medicine. This is a contribution to a special issue to honor Chris Walsh’s amazing career.