Modeling participant-related clinical research events using conceptual knowledge acquisition techniques
The active phase of a clinical trial is defined by a protocol schema consisting of participant-related events organized into multiple visits. Current efforts to model protocol schemas in a computable format have focused on high-level abstractions, such as the temporal relationships between visits. H...
Saved in:
Published in | AMIA ... Annual Symposium proceedings Vol. 2007; pp. 593 - 597 |
---|---|
Main Authors | , , |
Format | Journal Article |
Language | English |
Published |
United States
American Medical Informatics Association
11.10.2007
|
Subjects | |
Online Access | Get full text |
ISSN | 1942-597X 1559-4076 |
Cover
Loading…
Abstract | The active phase of a clinical trial is defined by a protocol schema consisting of participant-related events organized into multiple visits. Current efforts to model protocol schemas in a computable format have focused on high-level abstractions, such as the temporal relationships between visits. However, such approaches do not address the need for a more granular computational model of the individual events that comprise each visit. To address the preceding gap in knowledge, this paper will describe a study in which conceptual knowledge acquisition (CKA) techniques were applied to a corpus of 32 clinical trials protocol documents in order to develop a knowledge collection of common participant-related clinical research events. These techniques identified 7 high-level concepts that could be used as organizing principles in the resulting knowledge collection. Such results confirm the utility of CKA methods in the clinical research domain. |
---|---|
AbstractList | The active phase of a clinical trial is defined by a protocol schema consisting of participant-related events organized into multiple visits. Current efforts to model protocol schemas in a computable format have focused on high-level abstractions, such as the temporal relationships between visits. However, such approaches do not address the need for a more granular computational model of the individual events that comprise each visit. To address the preceding gap in knowledge, this paper will describe a study in which conceptual knowledge acquisition (CKA) techniques were applied to a corpus of 32 clinical trials protocol documents in order to develop a knowledge collection of common participant-related clinical research events. These techniques identified 7 high-level concepts that could be used as organizing principles in the resulting knowledge collection. Such results confirm the utility of CKA methods in the clinical research domain. The active phase of a clinical trial is defined by a protocol schema consisting of participant-related events organized into multiple visits. Current efforts to model protocol schemas in a computable format have focused on high-level abstractions, such as the temporal relationships between visits. However, such approaches do not address the need for a more granular computational model of the individual events that comprise each visit. To address the preceding gap in knowledge, this paper will describe a study in which conceptual knowledge acquisition (CKA) techniques were applied to a corpus of 32 clinical trials protocol documents in order to develop a knowledge collection of common participant-related clinical research events. These techniques identified 7 high-level concepts that could be used as organizing principles in the resulting knowledge collection. Such results confirm the utility of CKA methods in the clinical research domain.The active phase of a clinical trial is defined by a protocol schema consisting of participant-related events organized into multiple visits. Current efforts to model protocol schemas in a computable format have focused on high-level abstractions, such as the temporal relationships between visits. However, such approaches do not address the need for a more granular computational model of the individual events that comprise each visit. To address the preceding gap in knowledge, this paper will describe a study in which conceptual knowledge acquisition (CKA) techniques were applied to a corpus of 32 clinical trials protocol documents in order to develop a knowledge collection of common participant-related clinical research events. These techniques identified 7 high-level concepts that could be used as organizing principles in the resulting knowledge collection. Such results confirm the utility of CKA methods in the clinical research domain. |
Author | Mendonca, Eneida A Starren, Justin B Payne, Philip R O |
AuthorAffiliation | 2 Columbia University, Department of Biomedical Informatics, New York, NY 3 Marshfield Clinic Research Foundation, Marshfield, WI 1 The Ohio State University, Department of Biomedical Informatics, Columbus, OH |
AuthorAffiliation_xml | – name: 1 The Ohio State University, Department of Biomedical Informatics, Columbus, OH – name: 3 Marshfield Clinic Research Foundation, Marshfield, WI – name: 2 Columbia University, Department of Biomedical Informatics, New York, NY |
Author_xml | – sequence: 1 givenname: Philip R O surname: Payne fullname: Payne, Philip R O organization: Ohio State University, Department of Biomedical Informatics, Columbus, OH, USA – sequence: 2 givenname: Eneida A surname: Mendonca fullname: Mendonca, Eneida A – sequence: 3 givenname: Justin B surname: Starren fullname: Starren, Justin B |
BackLink | https://www.ncbi.nlm.nih.gov/pubmed/18693905$$D View this record in MEDLINE/PubMed |
BookMark | eNpVkEtLxDAUhYOMOA_9C9KVu0KaNK-NIIMvUNwouCuZ9LYT7SSdJB3x39vBUXR1L5xzv3O4czRx3sERmhWMqbzEgk_GXZUkZ0q8TtE8xjeMS8EkP0HTQnJFFWYz1D76Gjrr2qzXIVlje-1SHqDTCerMjIo1ussCRNDBrDPYgUsxG-L-xHhnoE_DaHh3_qODuoVMm-1go03WuyyBWTu7HSCeouNGdxHODnOBXm6un5d3-cPT7f3y6iHvC6FSLjChUFIpOBEYC8UlrTlfrQiTxFBRAtFGaGNKqqVqcCMaWUsBpQFoGAhCF-jym9sPqw3UZmwbdFf1wW50-Ky8ttV_xdl11fpdRThjQhYj4OIACH5fPFUbGw10nXbgh1gJXFDOCjUaz_8m_Ub8_JZ-ATOPfKs |
ContentType | Journal Article |
Copyright | 2007 AMIA - All rights reserved. 2007 |
Copyright_xml | – notice: 2007 AMIA - All rights reserved. 2007 |
DBID | CGR CUY CVF ECM EIF NPM 7X8 5PM |
DatabaseName | Medline MEDLINE MEDLINE (Ovid) MEDLINE MEDLINE PubMed MEDLINE - Academic PubMed Central (Full Participant titles) |
DatabaseTitle | MEDLINE Medline Complete MEDLINE with Full Text PubMed MEDLINE (Ovid) MEDLINE - Academic |
DatabaseTitleList | MEDLINE MEDLINE - Academic |
Database_xml | – sequence: 1 dbid: NPM name: PubMed url: https://proxy.k.utb.cz/login?url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed sourceTypes: Index Database – sequence: 2 dbid: EIF name: MEDLINE url: https://proxy.k.utb.cz/login?url=https://www.webofscience.com/wos/medline/basic-search sourceTypes: Index Database |
DeliveryMethod | fulltext_linktorsrc |
Discipline | Medicine |
EISSN | 1559-4076 |
EndPage | 597 |
ExternalDocumentID | PMC2655781 18693905 |
Genre | Journal Article Research Support, N.I.H., Extramural |
GrantInformation_xml | – fundername: NLM NIH HHS grantid: T15 LM007079 – fundername: NLM NIH HHS grantid: 5-T15-LM007079-13 |
GroupedDBID | 2WC 53G ADBBV ALMA_UNASSIGNED_HOLDINGS BAWUL CGR CUY CVF DIK E3Z ECM EIF GX1 HYE NPM OK1 RPM WOQ 7X8 5PM |
ID | FETCH-LOGICAL-p179t-7023e43876270079683d66bb2582c374e2ac7acc43a89f0f7f8d87e4ceef5e723 |
ISSN | 1942-597X |
IngestDate | Thu Aug 21 18:12:44 EDT 2025 Fri Jul 11 11:13:59 EDT 2025 Thu Apr 03 07:08:58 EDT 2025 |
IsPeerReviewed | true |
IsScholarly | true |
Language | English |
License | This is an Open Access article: verbatim copying and redistribution of this article are permitted in all media for any purpose |
LinkModel | OpenURL |
MergedId | FETCHMERGED-LOGICAL-p179t-7023e43876270079683d66bb2582c374e2ac7acc43a89f0f7f8d87e4ceef5e723 |
Notes | ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 23 |
PMID | 18693905 |
PQID | 70136519 |
PQPubID | 23479 |
PageCount | 5 |
ParticipantIDs | pubmedcentral_primary_oai_pubmedcentral_nih_gov_2655781 proquest_miscellaneous_70136519 pubmed_primary_18693905 |
PublicationCentury | 2000 |
PublicationDate | 2007-Oct-11 |
PublicationDateYYYYMMDD | 2007-10-11 |
PublicationDate_xml | – month: 10 year: 2007 text: 2007-Oct-11 day: 11 |
PublicationDecade | 2000 |
PublicationPlace | United States |
PublicationPlace_xml | – name: United States |
PublicationTitle | AMIA ... Annual Symposium proceedings |
PublicationTitleAlternate | AMIA Annu Symp Proc |
PublicationYear | 2007 |
Publisher | American Medical Informatics Association |
Publisher_xml | – name: American Medical Informatics Association |
References | 12463951 - Proc AMIA Symp. 2002;:879-83 11126691 - Ann Acad Med Singapore. 2000 Sep;29(5):576-81 15684136 - J Am Med Inform Assoc. 2005 May-Jun;12(3):338-45 17134616 - J Investig Med. 2006 Sep;54(6):327-33 15974245 - J Investig Med. 2005 May;53(4):192-200 11523076 - Stat Med. 2001 Sep 15-30;20(17-18):2683-96 |
References_xml | – reference: 15684136 - J Am Med Inform Assoc. 2005 May-Jun;12(3):338-45 – reference: 15974245 - J Investig Med. 2005 May;53(4):192-200 – reference: 12463951 - Proc AMIA Symp. 2002;:879-83 – reference: 11126691 - Ann Acad Med Singapore. 2000 Sep;29(5):576-81 – reference: 11523076 - Stat Med. 2001 Sep 15-30;20(17-18):2683-96 – reference: 17134616 - J Investig Med. 2006 Sep;54(6):327-33 |
SSID | ssj0047586 |
Score | 1.7527921 |
Snippet | The active phase of a clinical trial is defined by a protocol schema consisting of participant-related events organized into multiple visits. Current efforts... |
SourceID | pubmedcentral proquest pubmed |
SourceType | Open Access Repository Aggregation Database Index Database |
StartPage | 593 |
SubjectTerms | Abstracting and Indexing as Topic - methods Algorithms Artificial Intelligence Clinical Protocols Clinical Trials as Topic Humans Subject Headings Unified Medical Language System |
Title | Modeling participant-related clinical research events using conceptual knowledge acquisition techniques |
URI | https://www.ncbi.nlm.nih.gov/pubmed/18693905 https://www.proquest.com/docview/70136519 https://pubmed.ncbi.nlm.nih.gov/PMC2655781 |
Volume | 2007 |
hasFullText | 1 |
inHoldings | 1 |
isFullTextHit | |
isPrint | |
link | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV1Nb9NAEF2FHhAXRPkMtLAHbpYtx7vrdY5uFSigQASNlFu0Xm8gh7ghdZCK-uM7-2U7UQ7QixXZjg_7nmZnZt_MIPRet1whREGYygAGyuIyFGAGwzLOII4rS06kTuiPv6YXU_p5xma93m23uqQuIvn3YF3JfVCFe4CrrpL9D2Sbj8IN-A34whUQhus_YawHmZly8olw6uiqDo28Tedtfc2jF9cFoz-mnG3qzvpNvaKuHvni82pBLn9vl1bFZZPuurvrddeBzcef8iCKosA15v9xs9K6r-0qaLfCxk2fiBubMLVpm-B79C1qEFZ6jog0vuuoUstSBHnzEFzgzcaXjYARqoKzaCc_wbVhH3S0HvsHT67MyjSh3qegckaYDSGutXNhvJXWn-4YWmbnKro9m1mNbwfy9cpgrgdukWHM2t2u0SBOxudJysBgQez8gAz03IWPs0YeRCGOMuOt3AcOBSD7OtqOY3L5BD12EQXOLT2OUU9VT9HDsdNMPEM_PUvwAZZgzxLsWYItS7BhCW5ZghuW4A5LcMuS52j6YXR5fhG68RrhGqxwHXJw1xQlejvksLjDNCNlmhZFwrJEEk5VIiQXUlIisuEiXvBFVmZcUeDSgimekBfoqLqq1CuERUGTgUg5YUTSTCnBeCwL8MRFIcpYFH30zq_eHMyXPpMSlbraXs-57hkIUUQfvbRrOV_bLitzv_J9xHdWuXlBN0bffVItf5kG6Q7X1_f-5xv0qKXyCTqqN1t1Cs5nXbw1LLkDkbKTJg |
linkProvider | Geneva Foundation for Medical Education and Research |
openUrl | ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=Modeling+Participant-Related+Clinical+Research+Events+Using+Conceptual+Knowledge+Acquisition+Techniques&rft.jtitle=AMIA+...+Annual+Symposium+proceedings&rft.au=Payne%2C+Philip+R.O.&rft.au=Mendonca%2C+Eneida+A.&rft.au=Starren%2C+Justin+B.&rft.date=2007-10-11&rft.pub=American+Medical+Informatics+Association&rft.eissn=1559-4076&rft.volume=2007&rft.spage=593&rft.epage=597&rft_id=info%3Apmid%2F18693905&rft.externalDocID=PMC2655781 |
thumbnail_l | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=1942-597X&client=summon |
thumbnail_m | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=1942-597X&client=summon |
thumbnail_s | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=1942-597X&client=summon |