Analysis of the complete genome characterization of 11 human astrovirus strains in Shandong Province

• Published in: Zhōnghuá yùfáng-yīxué zázhì Vol. 58; no. 1; p. 40
• Main Authors: Chen, M, Xu, M Y, Liu, Y, Lin, X J, Xu, J K, Wang, S T, Xu, A Q, Tao, Z X
• Format: Journal Article
• Language: Chinese
• Published: China 06.01.2024
• Subjects: Astroviridae Infections - epidemiology; Feces; Genotype; Humans; Mamastrovirus - genetics; Phylogeny; Real-Time Polymerase Chain Reaction; Sequence Analysis, DNA
• ISSN: 0253-9624
• DOI: 10.3760/cma.j.cn112150-20230509-00357

To study the complete genome characterization of Human Astrovirus (HAstV) in Shandong Province. Stool samples from acute flaccid paralysis (AFP) surveillance in Shandong Province from 2020 to 2022 were collected, and HAstV nucleic acid was examined by real-time quantitative PCR (qPCR). Next-generation sequencing (NGS) was conducted for the positive samples to obtain complete genome sequences and identify the genotype. Homology comparison and phylogenetic analysis were performed by using BioEdit and Mega software. A total of 667 samples were examined by qPCR, of which 14 were HAstV-positive (2.1%), including HAstV-1 ( =6), MLB1 ( =6), MLB2 ( =1), and VA2 ( =1). The complete genome sequences were obtained from 11 samples. The six HAstV-1 sequences of this study had 98.2% to 99.9% nt similarities with each other and 87.6% to 98.6% with those from other regions. The four MLB1 sequences of this study had 99.1% to 99.9% nt similarities with each other and 92.2% to 99.4% with those from other regions. The VA2 sequen