Establishment of a quality control system for HLA allele typing and its key points
To list the key points for quality control during HLA-A, B, C, DRB1 and DQB1 allele typing by taking consideration of hardware, software and experimental procedures. A total of 10 167 samples from randomly selected healthy blood donors and donor-recipient pairs from Shenzhen were typed for exons 2-4...
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Published in | Zhonghua yi xue yi chuan xue za zhi Vol. 35; no. 3; p. 324 |
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Main Authors | , , , , |
Format | Journal Article |
Language | Chinese |
Published |
China
10.06.2018
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Abstract | To list the key points for quality control during HLA-A, B, C, DRB1 and DQB1 allele typing by taking consideration of hardware, software and experimental procedures.
A total of 10 167 samples from randomly selected healthy blood donors and donor-recipient pairs from Shenzhen were typed for exons 2-4 of HLA-A, B, C, exon 2 of HLA-DRB1, and exons 2 and 3 of HLA-DQB1 by PCR- sequence-based typing. For 56 cases whose forward and reverse sequences were inconsistent, the samples were re-checked by a PCR-sequence specific oligonucleotide probe method. Novel alleles not included in the IMGT/HLA database were cloned and sequenced using in-house primers.
Eight novel HLA alleles were identified. A table for key positions of single nucleotide polymorphisms (SNPs) were generated, which summarized the key points for quality control during HLA-A, B, C, DRB1 and DQB1 allele typing. Among the listed SNPs, 3 were located at the HLA-A locus, 8 were at the HLA-B locus, 6 were at the C locus, 6 were at the DQB1 locus, and 4 were |
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AbstractList | To list the key points for quality control during HLA-A, B, C, DRB1 and DQB1 allele typing by taking consideration of hardware, software and experimental procedures.
A total of 10 167 samples from randomly selected healthy blood donors and donor-recipient pairs from Shenzhen were typed for exons 2-4 of HLA-A, B, C, exon 2 of HLA-DRB1, and exons 2 and 3 of HLA-DQB1 by PCR- sequence-based typing. For 56 cases whose forward and reverse sequences were inconsistent, the samples were re-checked by a PCR-sequence specific oligonucleotide probe method. Novel alleles not included in the IMGT/HLA database were cloned and sequenced using in-house primers.
Eight novel HLA alleles were identified. A table for key positions of single nucleotide polymorphisms (SNPs) were generated, which summarized the key points for quality control during HLA-A, B, C, DRB1 and DQB1 allele typing. Among the listed SNPs, 3 were located at the HLA-A locus, 8 were at the HLA-B locus, 6 were at the C locus, 6 were at the DQB1 locus, and 4 were |
Author | Xu, Yunping Hong, Wenxu Deng, Zhihui Gao, Suqing Nie, Dongmei |
Author_xml | – sequence: 1 givenname: Suqing surname: Gao fullname: Gao, Suqing email: xuyunping1982@163.com organization: Shenzhen Blood Center, High-resolution HLA Typing Laboratory of China Marrow Donor Program, Shenzhen, Guangdong 518035, China. xuyunping1982@163.com – sequence: 2 givenname: Yunping surname: Xu fullname: Xu, Yunping – sequence: 3 givenname: Dongmei surname: Nie fullname: Nie, Dongmei – sequence: 4 givenname: Zhihui surname: Deng fullname: Deng, Zhihui – sequence: 5 givenname: Wenxu surname: Hong fullname: Hong, Wenxu |
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SubjectTerms | Adult Alleles Base Sequence DNA Primers - genetics Exons Female Genotype Histocompatibility Testing - methods HLA-A Antigens - genetics HLA-DRB1 Chains - genetics Humans Male Molecular Sequence Data Polymerase Chain Reaction Young Adult |
Title | Establishment of a quality control system for HLA allele typing and its key points |
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