Genome‐wide and molecular evolution analysis of the Poplar KT/HAK/KUP potassium transporter gene family
As the largest K + transport gene family, KT/HAK/KUP family plays an important role in plant growth, development, and stress adaptation. However, there is limited information about this family in woody plant species. In this study, with genome‐wide in‐depth investigation, 31 Poplar KT/HAK/KUP transp...
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| Published in | Ecology and evolution Vol. 2; no. 8; pp. 1996 - 2004 |
|---|---|
| Main Authors | , , , , |
| Format | Journal Article |
| Language | English |
| Published |
England
John Wiley & Sons, Inc
01.08.2012
Blackwell Publishing Ltd |
| Subjects | |
| Online Access | Get full text |
| ISSN | 2045-7758 2045-7758 |
| DOI | 10.1002/ece3.299 |
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| Abstract | As the largest K
+ transport gene family, KT/HAK/KUP family plays an important role in plant growth, development, and stress adaptation. However, there is limited information about this family in woody plant species. In this study, with genome‐wide in‐depth investigation, 31 Poplar KT/HAK/KUP transporter genes including six pairs of tandem duplicated and eight pairs of segmental duplicated paralogs have been identified, suggesting segmental and tandem duplication events contributed to the expansion of this family in Poplar. The combination of phylogenetic, exon structure and splice site, and paragon analysis revealed 11 pairs of Poplar KT/HAK/KUP duplicates. For these 11 pairs, all pairs are subject to purify selection, and asymmetric evolutionary rates have been found to occur in three pairs. This study might provide more insights into the underlying evolution mechanisms of trees acclimating to their natural habitat.
In this study, with genome‐wide in‐depth investigation, 31 Poplar KT/HAK/KUP transporter genes including six pairs of tandem duplicated and eight pairs of segmental duplicated paralogs have been identified, suggesting segmental and tandem duplication events contributed to the expansion of this family in Poplar. |
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| AbstractList | As the largest K(+) transport gene family, KT/HAK/KUP family plays an important role in plant growth, development, and stress adaptation. However, there is limited information about this family in woody plant species. In this study, with genome-wide in-depth investigation, 31 Poplar KT/HAK/KUP transporter genes including six pairs of tandem duplicated and eight pairs of segmental duplicated paralogs have been identified, suggesting segmental and tandem duplication events contributed to the expansion of this family in Poplar. The combination of phylogenetic, exon structure and splice site, and paragon analysis revealed 11 pairs of Poplar KT/HAK/KUP duplicates. For these 11 pairs, all pairs are subject to purify selection, and asymmetric evolutionary rates have been found to occur in three pairs. This study might provide more insights into the underlying evolution mechanisms of trees acclimating to their natural habitat. As the largest K + transport gene family, KT/HAK/KUP family plays an important role in plant growth, development, and stress adaptation. However, there is limited information about this family in woody plant species. In this study, with genome-wide in-depth investigation, 31 Poplar KT/HAK/KUP transporter genes including six pairs of tandem duplicated and eight pairs of segmental duplicated paralogs have been identified, suggesting segmental and tandem duplication events contributed to the expansion of this family in Poplar. The combination of phylogenetic, exon structure and splice site, and paragon analysis revealed 11 pairs of Poplar KT/HAK/KUP duplicates. For these 11 pairs, all pairs are subject to purify selection, and asymmetric evolutionary rates have been found to occur in three pairs. This study might provide more insights into the underlying evolution mechanisms of trees acclimating to their natural habitat. As the largest K(+) transport gene family, KT/HAK/KUP family plays an important role in plant growth, development, and stress adaptation. However, there is limited information about this family in woody plant species. In this study, with genome-wide in-depth investigation, 31 Poplar KT/HAK/KUP transporter genes including six pairs of tandem duplicated and eight pairs of segmental duplicated paralogs have been identified, suggesting segmental and tandem duplication events contributed to the expansion of this family in Poplar. The combination of phylogenetic, exon structure and splice site, and paragon analysis revealed 11 pairs of Poplar KT/HAK/KUP duplicates. For these 11 pairs, all pairs are subject to purify selection, and asymmetric evolutionary rates have been found to occur in three pairs. This study might provide more insights into the underlying evolution mechanisms of trees acclimating to their natural habitat.As the largest K(+) transport gene family, KT/HAK/KUP family plays an important role in plant growth, development, and stress adaptation. However, there is limited information about this family in woody plant species. In this study, with genome-wide in-depth investigation, 31 Poplar KT/HAK/KUP transporter genes including six pairs of tandem duplicated and eight pairs of segmental duplicated paralogs have been identified, suggesting segmental and tandem duplication events contributed to the expansion of this family in Poplar. The combination of phylogenetic, exon structure and splice site, and paragon analysis revealed 11 pairs of Poplar KT/HAK/KUP duplicates. For these 11 pairs, all pairs are subject to purify selection, and asymmetric evolutionary rates have been found to occur in three pairs. This study might provide more insights into the underlying evolution mechanisms of trees acclimating to their natural habitat. As the largest K + transport gene family, KT/HAK/KUP family plays an important role in plant growth, development, and stress adaptation. However, there is limited information about this family in woody plant species. In this study, with genome‐wide in‐depth investigation, 31 Poplar KT/HAK/KUP transporter genes including six pairs of tandem duplicated and eight pairs of segmental duplicated paralogs have been identified, suggesting segmental and tandem duplication events contributed to the expansion of this family in Poplar. The combination of phylogenetic, exon structure and splice site, and paragon analysis revealed 11 pairs of Poplar KT/HAK/KUP duplicates. For these 11 pairs, all pairs are subject to purify selection, and asymmetric evolutionary rates have been found to occur in three pairs. This study might provide more insights into the underlying evolution mechanisms of trees acclimating to their natural habitat. In this study, with genome‐wide in‐depth investigation, 31 Poplar KT/HAK/KUP transporter genes including six pairs of tandem duplicated and eight pairs of segmental duplicated paralogs have been identified, suggesting segmental and tandem duplication events contributed to the expansion of this family in Poplar. As the largest K super(+) transport gene family, KT/HAK/KUP family plays an important role in plant growth, development, and stress adaptation. However, there is limited information about this family in woody plant species. In this study, with genome-wide in-depth investigation, 31 Poplar KT/HAK/KUP transporter genes including six pairs of tandem duplicated and eight pairs of segmental duplicated paralogs have been identified, suggesting segmental and tandem duplication events contributed to the expansion of this family in Poplar. The combination of phylogenetic, exon structure and splice site, and paragon analysis revealed 11 pairs of Poplar KT/HAK/KUP duplicates. For these 11 pairs, all pairs are subject to purify selection, and asymmetric evolutionary rates have been found to occur in three pairs. This study might provide more insights into the underlying evolution mechanisms of trees acclimating to their natural habitat. In this study, with genome-wide in-depth investigation, 31 Poplar KT/HAK/KUP transporter genes including six pairs of tandem duplicated and eight pairs of segmental duplicated paralogs have been identified, suggesting segmental and tandem duplication events contributed to the expansion of this family in Poplar. |
| Author | Cui, Kai Zhang, Jianguo Duan, Aiguo Zeng, Yanfei He, Caiyun |
| Author_xml | – sequence: 1 givenname: Caiyun surname: He fullname: He, Caiyun organization: Chinese Academy of Forestry – sequence: 2 givenname: Kai surname: Cui fullname: Cui, Kai organization: Chinese Academy of Forestry – sequence: 3 givenname: Aiguo surname: Duan fullname: Duan, Aiguo organization: Chinese Academy of Forestry – sequence: 4 givenname: Yanfei surname: Zeng fullname: Zeng, Yanfei organization: Chinese Academy of Forestry – sequence: 5 givenname: Jianguo surname: Zhang fullname: Zhang, Jianguo organization: Chinese Academy of Forestry |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/22957200$$D View this record in MEDLINE/PubMed |
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| DOI | 10.1002/ece3.299 |
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| Keywords | KT/HAK/KUP family segmental duplication tandem duplication Asymmetric evolutionary rates |
| Language | English |
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| Notes | ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 14 content type line 23 Funding Information This work was supported by grants from the Special Research Program for Public-welfare Forestry of China (201004035), Key Project and Specialized Research Fund for Young Scholars of the Research Institute of Forestry, Chinese Academy of Forestry (No. ZD200911 and RIF2010-06) and National Natural Science Foundation of China (No. 31100454). |
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| Snippet | As the largest K
+ transport gene family, KT/HAK/KUP family plays an important role in plant growth, development, and stress adaptation. However, there is... As the largest K(+) transport gene family, KT/HAK/KUP family plays an important role in plant growth, development, and stress adaptation. However, there is... As the largest K+ transport gene family, KT/HAK/KUP family plays an important role in plant growth, development, and stress adaptation. However, there is... As the largest K super(+) transport gene family, KT/HAK/KUP family plays an important role in plant growth, development, and stress adaptation. However, there... As the largest K + transport gene family, KT/HAK/KUP family plays an important role in plant growth, development, and stress adaptation. However, there is... |
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| StartPage | 1996 |
| SubjectTerms | Asymmetric evolutionary rates Evolution Genes Genomes KT/HAK/KUP family Molecular evolution Original Research Phylogenetics Phylogeny Plant growth Plant species Poplar Potassium Potassium transporter Proteins Reproduction (copying) segmental duplication tandem duplication Woody plants |
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| Title | Genome‐wide and molecular evolution analysis of the Poplar KT/HAK/KUP potassium transporter gene family |
| URI | https://onlinelibrary.wiley.com/doi/abs/10.1002%2Fece3.299 https://www.ncbi.nlm.nih.gov/pubmed/22957200 https://www.proquest.com/docview/2290306015 https://www.proquest.com/docview/1038596888 https://www.proquest.com/docview/1712564147 https://pubmed.ncbi.nlm.nih.gov/PMC3434002 |
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