Verification of the three-dimensional structure of synthesized molecule by molecular dynamic simulations

The paper presents comparison between molecular models made by using software packages, experimental results and performed simulations in molecular dynamics area with created molecule. Molecule was synthetized using organic synthesis strategy. After structural analysis, precise layout of all the ato...

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Published inIEEE EUROCON 2017 -17th International Conference on Smart Technologies pp. 944 - 948
Main Authors Bigovic, Miljan, Zecevic, Zarko, Filipovic, Luka, Krstajic, Bozo
Format Conference Proceeding
LanguageEnglish
Published IEEE 01.07.2017
Subjects
Bioinformatics
molecular dynamics
molecule modeling
organic molecule
parallel computing simulations
protein
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Abstract The paper presents comparison between molecular models made by using software packages, experimental results and performed simulations in molecular dynamics area with created molecule. Molecule was synthetized using organic synthesis strategy. After structural analysis, precise layout of all the atoms in space was determined. Molecule was converted into standard chemical format, visualized and prepared for simulations. Here we intend to show that it is possible, by using powerful computer infrastructure and related applications, to create good models of molecules, which can be used in simulations that produce valid characteristics of subject molecules interacting with various organic compounds.
AbstractList The paper presents comparison between molecular models made by using software packages, experimental results and performed simulations in molecular dynamics area with created molecule. Molecule was synthetized using organic synthesis strategy. After structural analysis, precise layout of all the atoms in space was determined. Molecule was converted into standard chemical format, visualized and prepared for simulations. Here we intend to show that it is possible, by using powerful computer infrastructure and related applications, to create good models of molecules, which can be used in simulations that produce valid characteristics of subject molecules interacting with various organic compounds.
Author Filipovic, Luka
Krstajic, Bozo
Bigovic, Miljan
Zecevic, Zarko
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  givenname: Zarko
  surname: Zecevic
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  givenname: Luka
  surname: Filipovic
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  givenname: Bozo
  surname: Krstajic
  fullname: Krstajic, Bozo
  email: bozok@ac.me
  organization: Fac. of Electr. Eng., Univ. of Montenegro, Podgorica, Montenegro
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Snippet The paper presents comparison between molecular models made by using software packages, experimental results and performed simulations in molecular dynamics...
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SubjectTerms Bioinformatics
molecular dynamics
molecule modeling
organic molecule
parallel computing simulations
protein
Title Verification of the three-dimensional structure of synthesized molecule by molecular dynamic simulations
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