An Arabidopsis SUMO E3 Ligase, SIZ1, Negatively Regulates Photomorphogenesis by Promoting COP1 Activity

COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1), a ubiquitin E3 ligase, is a central negative regulator of photomorphogenesis. However, how COP1 activity is regulated by post-translational modifications remains largely unknown. Here we show that SUMO (small ubiquitin-like modifier) modification enhances COP1...

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Published inPLOS genetics Vol. 12; no. 4; p. e1006016
Main Authors 三浦 謙治, Lin Xiao-Li, Niu De, Hu Zi-Liang, Kim Dae Heon, Jin Yin Hua, Cai Bin, Liu Peng, Miura Kenji, Yun Dae-Jin, Kim Woe-Yeon, Lin Rongcheng, Jin Jing Bo
Format Journal Article
LanguageEnglish
Published United States Public Library of Science 01.04.2016
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Abstract COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1), a ubiquitin E3 ligase, is a central negative regulator of photomorphogenesis. However, how COP1 activity is regulated by post-translational modifications remains largely unknown. Here we show that SUMO (small ubiquitin-like modifier) modification enhances COP1 activity. Loss-of-function siz1 mutant seedlings exhibit a weak constitutive photomorphogenic phenotype. SIZ1 physically interacts with COP1 and mediates the sumoylation of COP1. A K193R substitution in COP1 blocks its SUMO modification and reduces COP1 activity in vitro and in planta. Consistently, COP1 activity is reduced in siz1 and the level of HY5, a COP1 target protein, is increased in siz1. Sumoylated COP1 may exhibits higher transubiquitination activity than does non-sumoylated COP1, but SIZ1-mediated SUMO modification does not affect COP1 dimerization, COP1-HY5 interaction, and nuclear accumulation of COP1. Interestingly, prolonged light exposure reduces the sumoylation level of COP1, and COP1 mediates the ubiquitination and degradation of SIZ1. These regulatory mechanisms may maintain the homeostasis of COP1 activity, ensuing proper photomorphogenic development in changing light environment. Our genetic and biochemical studies identify a function for SIZ1 in photomorphogenesis and reveal a novel SUMO-regulated ubiquitin ligase, COP1, in plants.
AbstractList COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1), a ubiquitin E3 ligase, is a central negative regulator of photomorphogenesis. However, how COP1 activity is regulated by post-translational modifications remains largely unknown. Here we show that SUMO (small ubiquitin-like modifier) modification enhances COP1 activity. Loss-of-function siz1 mutant seedlings exhibit a weak constitutive photomorphogenic phenotype. SIZ1 physically interacts with COP1 and mediates the sumoylation of COP1. A K193R substitution in COP1 blocks its SUMO modification and reduces COP1 activity in vitro and in planta. Consistently, COP1 activity is reduced in siz1 and the level of HY5, a COP1 target protein, is increased in siz1. Sumoylated COP1 may exhibits higher transubiquitination activity than does non-sumoylated COP1, but SIZ1-mediated SUMO modification does not affect COP1 dimerization, COP1-HY5 interaction, and nuclear accumulation of COP1. Interestingly, prolonged light exposure reduces the sumoylation level of COP1, and COP1 mediates the ubiquitination and degradation of SIZ1. These regulatory mechanisms may maintain the homeostasis of COP1 activity, ensuing proper photomorphogenic development in changing light environment. Our genetic and biochemical studies identify a function for SIZ1 in photomorphogenesis and reveal a novel SUMO-regulated ubiquitin ligase, COP1, in plants.
  COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1), a ubiquitin E3 ligase, is a central negative regulator of photomorphogenesis. However, how COP1 activity is regulated by post-translational modifications remains largely unknown. Here we show that SUMO (small ubiquitin-like modifier) modification enhances COP1 activity. Loss-of-function siz1 mutant seedlings exhibit a weak constitutive photomorphogenic phenotype. SIZ1 physically interacts with COP1 and mediates the sumoylation of COP1. A K193R substitution in COP1 blocks its SUMO modification and reduces COP1 activity in vitro and in planta. Consistently, COP1 activity is reduced in siz1 and the level of HY5, a COP1 target protein, is increased in siz1. Sumoylated COP1 may exhibits higher transubiquitination activity than does non-sumoylated COP1, but SIZ1-mediated SUMO modification does not affect COP1 dimerization, COP1-HY5 interaction, and nuclear accumulation of COP1. Interestingly, prolonged light exposure reduces the sumoylation level of COP1, and COP1 mediates the ubiquitination and degradation of SIZ1. These regulatory mechanisms may maintain the homeostasis of COP1 activity, ensuing proper photomorphogenic development in changing light environment. Our genetic and biochemical studies identify a function for SIZ1 in photomorphogenesis and reveal a novel SUMO-regulated ubiquitin ligase, COP1, in plants.
COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1), a ubiquitin E3 ligase, is a central negative regulator of photomorphogenesis. However, how COP1 activity is regulated by post-translational modifications remains largely unknown. Here we show that SUMO (small ubiquitin-like modifier) modification enhances COP1 activity. Loss-of-function siz1 mutant seedlings exhibit a weak constitutive photomorphogenic phenotype. SIZ1 physically interacts with COP1 and mediates the sumoylation of COP1. A K193R substitution in COP1 blocks its SUMO modification and reduces COP1 activity in vitro and in planta . Consistently, COP1 activity is reduced in siz1 and the level of HY5, a COP1 target protein, is increased in siz1 . Sumoylated COP1 may exhibits higher transubiquitination activity than does non-sumoylated COP1, but SIZ1-mediated SUMO modification does not affect COP1 dimerization, COP1-HY5 interaction, and nuclear accumulation of COP1. Interestingly, prolonged light exposure reduces the sumoylation level of COP1, and COP1 mediates the ubiquitination and degradation of SIZ1. These regulatory mechanisms may maintain the homeostasis of COP1 activity, ensuing proper photomorphogenic development in changing light environment. Our genetic and biochemical studies identify a function for SIZ1 in photomorphogenesis and reveal a novel SUMO-regulated ubiquitin ligase, COP1, in plants. In darkness, the ubiquitin E3 ligase COP1 accumulates in the nucleus and mediates ubiquitination and degradation of positive regulators of photomorphogenesis, such as HY5. In response to light, COP1 activity is reduced to ensure proper photomorphogenic development. However, post-translational modifications that regulate COP1 activity are largely unknown. We have found that the Arabidopsis SUMO E3 ligase SIZ1 negatively regulates photomorphogenesis. Genetic and biochemical lines of evidence demonstrate that SIZ1-mediated SUMO modification of COP1 enhances its E3 ubiquitin ligase activity, which causes increased ubiquitination and degradation of HY5. In response to the light, sumoylation level of COP1 is decreased, which may also contributes to the reduction of COP1 activity in the light. Moreover, COP1 mediates ubiquitination and 26S proteasome-dependent degradation of SIZ1 and this feedback repression may ensure the moderate levels of COP1 activity. Our study established a post-translational regulatory modular consisting of SIZ1-mediated sumoylation and COP1-mediated ubiquitination that tightly regulate photomorphogenesis.
Audience Academic
Author Hu Zi-Liang
Liu Peng
Miura Kenji
Cai Bin
Lin Rongcheng
Yun Dae-Jin
Niu De
三浦 謙治
Lin Xiao-Li
Kim Dae Heon
Jin Jing Bo
Jin Yin Hua
Kim Woe-Yeon
AuthorAffiliation Peking University, CHINA
5 Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing, China
4 Division of Applied Life Science (BK21Plus), PMBBRC & IALS, Gyeongsang National University, Jinju, Republic of Korea
3 Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Japan
1 Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing, China
2 Department of Biology, Sunchon National University, Sunchon, Republic of Korea
AuthorAffiliation_xml – name: 1 Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing, China
– name: 4 Division of Applied Life Science (BK21Plus), PMBBRC & IALS, Gyeongsang National University, Jinju, Republic of Korea
– name: Peking University, CHINA
– name: 5 Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing, China
– name: 2 Department of Biology, Sunchon National University, Sunchon, Republic of Korea
– name: 3 Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Japan
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  fullname: 三浦 謙治
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  fullname: Niu De
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BackLink https://cir.nii.ac.jp/crid/1571417127594754816$$DView record in CiNii
https://www.ncbi.nlm.nih.gov/pubmed/27128446$$D View this record in MEDLINE/PubMed
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ContentType Journal Article
Copyright COPYRIGHT 2016 Public Library of Science
2016 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Lin X-L, Niu D, Hu Z-L, Kim DH, Jin YH, Cai B, et al. (2016) An Arabidopsis SUMO E3 Ligase, SIZ1, Negatively Regulates Photomorphogenesis by Promoting COP1 Activity. PLoS Genet 12(4): e1006016. doi:10.1371/journal.pgen.1006016
2016 Lin et al 2016 Lin et al
2016 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Lin X-L, Niu D, Hu Z-L, Kim DH, Jin YH, Cai B, et al. (2016) An Arabidopsis SUMO E3 Ligase, SIZ1, Negatively Regulates Photomorphogenesis by Promoting COP1 Activity. PLoS Genet 12(4): e1006016. doi:10.1371/journal.pgen.1006016
Copyright_xml – notice: COPYRIGHT 2016 Public Library of Science
– notice: 2016 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Lin X-L, Niu D, Hu Z-L, Kim DH, Jin YH, Cai B, et al. (2016) An Arabidopsis SUMO E3 Ligase, SIZ1, Negatively Regulates Photomorphogenesis by Promoting COP1 Activity. PLoS Genet 12(4): e1006016. doi:10.1371/journal.pgen.1006016
– notice: 2016 Lin et al 2016 Lin et al
– notice: 2016 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Lin X-L, Niu D, Hu Z-L, Kim DH, Jin YH, Cai B, et al. (2016) An Arabidopsis SUMO E3 Ligase, SIZ1, Negatively Regulates Photomorphogenesis by Promoting COP1 Activity. PLoS Genet 12(4): e1006016. doi:10.1371/journal.pgen.1006016
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Conceived and designed the experiments: XLL JBJ. Performed the experiments: XLL DN ZLH DHK YHJ BC. Analyzed the data: RL WYK KM PL DJY. Contributed reagents/materials/analysis tools: RL WYK KM PL DJY. Wrote the paper: XLL JBJ.
The authors have declared that no competing interests exist.
Current address: Division of Biological Environmental Sciences and Engineering, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia
ORCID 0000-0003-1262-2176
0000-0001-5847-5138
OpenAccessLink http://journals.scholarsportal.info/openUrl.xqy?doi=10.1371/journal.pgen.1006016
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  article-title: SUMOylation regulates the homologous to E6-AP carboxyl terminus (HECT) ubiquitin ligase Rsp5p
  publication-title: J Biol Chem
  doi: 10.1074/jbc.M112.424234
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Snippet COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1), a ubiquitin E3 ligase, is a central negative regulator of photomorphogenesis. However, how COP1 activity is regulated...
  COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1), a ubiquitin E3 ligase, is a central negative regulator of photomorphogenesis. However, how COP1 activity is regulated...
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SubjectTerms Amino Acid Substitution - genetics
Amino acids
Arabidopsis
Arabidopsis - genetics
Arabidopsis - growth & development
Arabidopsis Proteins - genetics
Arabidopsis Proteins - metabolism
Arabidopsis thaliana
Basic-Leucine Zipper Transcription Factors - genetics
Basic-Leucine Zipper Transcription Factors - metabolism
Biology and life sciences
Cell cycle
Gene Expression Regulation, Plant
Genetic aspects
Genetic research
Homeostasis
Kinases
Ligases
Ligases - genetics
Ligases - metabolism
Light
Mutation
Nuclear Proteins - genetics
Nuclear Proteins - metabolism
Photomorphogenesis
Physiological aspects
Plant Development - genetics
Post-translational modifications
Proteins
Proteolysis
Research and Analysis Methods
Seedlings - genetics
Seedlings - growth & development
Small Ubiquitin-Related Modifier Proteins - genetics
Small Ubiquitin-Related Modifier Proteins - metabolism
Sumoylation - genetics
Ubiquitin
Ubiquitin-Protein Ligases - genetics
Ubiquitin-Protein Ligases - metabolism
Ubiquitination - genetics
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Title An Arabidopsis SUMO E3 Ligase, SIZ1, Negatively Regulates Photomorphogenesis by Promoting COP1 Activity
URI https://cir.nii.ac.jp/crid/1571417127594754816
https://www.ncbi.nlm.nih.gov/pubmed/27128446
https://www.proquest.com/docview/1789552316
https://www.proquest.com/docview/1794502461
https://pubmed.ncbi.nlm.nih.gov/PMC4851335
https://doaj.org/article/b2516cfc6b8c42dd8bb9eb55dfd02617
http://dx.doi.org/10.1371/journal.pgen.1006016
Volume 12
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