Diversity of the Human Intestinal Microbial Flora

The human endogenous intestinal microflora is an essential "organ" in providing nourishment, regulating epithelial development, and instructing innate immunity; yet, surprisingly, basic features remain poorly described. We examined 13,355 prokaryotic ribosomal RNA gene sequences from multi...

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Published in	Science (American Association for the Advancement of Science) Vol. 308; no. 5728; pp. 1635 - 1638
Main Authors	Eckburg, Paul B, Bik, Elisabeth M, Bernstein, Charles N, Purdom, Elizabeth, Dethlefsen, Les, Sargent, Michael, Gill, Steven R, Nelson, Karen E, Relman, David A
Format	Journal Article
Language	English
Published	Washington, DC American Association for the Advancement of Science 10.06.2005 The American Association for the Advancement of Science
Subjects	Adult Anatomy Bacteria Bacteria - classification Bacteria - genetics Bacteria - isolation & purification Bacteroidetes - classification Bacteroidetes - genetics Bacteroidetes - isolation & purification Biodiversity Biological and medical sciences Biological taxonomies Colon - microbiology Community composition Community Relations community structure Comparative Analysis Digestive system DNA, Ribosomal - genetics Ecosystem Ecosystems feces Feces - microbiology Flora Fundamental and applied biological sciences. Psychology Gastrointestinal system Genes, Archaeal Genes, Bacterial Genes, rRNA Genetic diversity Genetic Variation Genetics Humans innate immunity Intestinal microbiology intestinal microorganisms Intestinal Mucosa - microbiology Intestine. Mesentery Intestines Libraries Methanobrevibacter - classification Methanobrevibacter - genetics Methanobrevibacter - isolation & purification Microbiology Microbiota Microorganisms Middle Aged Molecular Sequence Data mucosa nucleotide sequences Phylogenetics Phylogeny Polymerase Chain Reaction Ribonucleic acid Ribosomal DNA ribosomal RNA RNA RNA, Ribosomal, 16S - genetics Vertebrates: digestive system Human Healthy subject Nucleotide sequence Health Mucosa Variability Gut Microflora Immunity Infection Characterization Microbiological investigation Ribosomal RNA Ecosystem Bacteriosis Colon Feces Comparative study
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Abstract	The human endogenous intestinal microflora is an essential "organ" in providing nourishment, regulating epithelial development, and instructing innate immunity; yet, surprisingly, basic features remain poorly described. We examined 13,355 prokaryotic ribosomal RNA gene sequences from multiple colonic mucosal sites and feces of healthy subjects to improve our understanding of gut microbial diversity. A majority of the bacterial sequences corresponded to uncultivated species and novel microorganisms. We discovered significant intersubject variability and differences between stool and mucosa community composition. Characterization of this immensely diverse ecosystem is the first step in elucidating its role in health and disease.
AbstractList	The human endogenous intestinal microflora is an essential "organ" in providing nourishment, regulating epithelial development, and instructing innate immunity; yet, surprisingly, basic features remain poorly described. We examined 13,355 prokaryotic ribosomal RNA gene sequences from multiple colonic mucosal sites and feces of healthy subjects to improve our understanding of gut microbial diversity. A majority of the bacterial sequences corresponded to uncultivated species and novel microorganisms. We discovered significant intersubject variability and differences between stool and mucosa community composition. Characterization of this immensely diverse ecosystem is the first step in elucidating its role in health and disease. The human endogenous intestinal microflora is an essential "organ" in providing nourishment, regulating epithelial development, and instructing innate immunity; yet, surprisingly, basic features remain poorly described. We examined 13,355 prokaryotic ribosomal RNA gene sequences from multiple colonic mucosal sites and feces of healthy subjects to improve our understanding of gut microbial diversity. A majority of the bacterial sequences corresponded to uncultivated species and novel microorganisms. We discovered significant intersubject variability and differences between stool and mucosa community composition. Characterization of this immensely diverse ecosystem is the first step in elucidating its role in health and disease. [PUBLICATION ABSTRACT] The human endogenous intestinal microflora is an essential "organ" in providing nourishment, regulating epithelial development, and instructing innate immunity; yet, surprisingly, basic features remain poorly described. We examined 13,355 prokaryotic ribosomal RNA gene sequences from multiple colonic mucosal sites and feces of healthy subjects to improve our understanding of gut microbial diversity. A majority of the bacterial sequences corresponded to uncultivated species and novel microorganisms. We discovered significant intersubject variability and differences between stool and mucosa community composition. Characterization of this immensely diverse ecosystem is the first step in elucidating its role in health and disease.The human endogenous intestinal microflora is an essential "organ" in providing nourishment, regulating epithelial development, and instructing innate immunity; yet, surprisingly, basic features remain poorly described. We examined 13,355 prokaryotic ribosomal RNA gene sequences from multiple colonic mucosal sites and feces of healthy subjects to improve our understanding of gut microbial diversity. A majority of the bacterial sequences corresponded to uncultivated species and novel microorganisms. We discovered significant intersubject variability and differences between stool and mucosa community composition. Characterization of this immensely diverse ecosystem is the first step in elucidating its role in health and disease.
Audience	Academic
Author	Bik, Elisabeth M Gill, Steven R Bernstein, Charles N Nelson, Karen E Dethlefsen, Les Purdom, Elizabeth Sargent, Michael Eckburg, Paul B Relman, David A
Author_xml	– sequence: 1 fullname: Eckburg, Paul B – sequence: 2 fullname: Bik, Elisabeth M – sequence: 3 fullname: Bernstein, Charles N – sequence: 4 fullname: Purdom, Elizabeth – sequence: 5 fullname: Dethlefsen, Les – sequence: 6 fullname: Sargent, Michael – sequence: 7 fullname: Gill, Steven R – sequence: 8 fullname: Nelson, Karen E – sequence: 9 fullname: Relman, David A
BackLink	http://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=16856238$$DView record in Pascal Francis https://www.ncbi.nlm.nih.gov/pubmed/15831718$$D View this record in MEDLINE/PubMed
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ContentType	Journal Article
Copyright	Copyright 2005 American Association for the Advancement of Science 2005 INIST-CNRS COPYRIGHT 2005 American Association for the Advancement of Science COPYRIGHT 2005 American Association for the Advancement of Science Copyright American Association for the Advancement of Science Jun 10, 2005
Copyright_xml	– notice: Copyright 2005 American Association for the Advancement of Science – notice: 2005 INIST-CNRS – notice: COPYRIGHT 2005 American Association for the Advancement of Science – notice: COPYRIGHT 2005 American Association for the Advancement of Science – notice: Copyright American Association for the Advancement of Science Jun 10, 2005
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Keywords	Human Healthy subject Nucleotide sequence Health Mucosa Variability Gut Microflora Immunity Infection Characterization Microbiological investigation Ribosomal RNA Ecosystem Bacteriosis Colon Feces Comparative study
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Notes	SourceType-Scholarly Journals-1 ObjectType-Feature-1 content type line 14 ObjectType-Article-2 content type line 23 ObjectType-Article-1 ObjectType-Feature-2 To whom correspondence should be addressed. E-mail: eckburg1@stanford.edu (P.B.E.); relman@stanford.edu (D.A.R.)
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Snippet	The human endogenous intestinal microflora is an essential "organ" in providing nourishment, regulating epithelial development, and instructing innate... The human endogenous intestinal microflora is an essential “organ” in providing nourishment, regulating epithelial development, and instructing innate...
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SubjectTerms	Adult Anatomy Bacteria Bacteria - classification Bacteria - genetics Bacteria - isolation & purification Bacteroidetes - classification Bacteroidetes - genetics Bacteroidetes - isolation & purification Biodiversity Biological and medical sciences Biological taxonomies Colon - microbiology Community composition Community Relations community structure Comparative Analysis Digestive system DNA, Ribosomal - genetics Ecosystem Ecosystems feces Feces - microbiology Flora Fundamental and applied biological sciences. Psychology Gastrointestinal system Genes, Archaeal Genes, Bacterial Genes, rRNA Genetic diversity Genetic Variation Genetics Humans innate immunity Intestinal microbiology intestinal microorganisms Intestinal Mucosa - microbiology Intestine. Mesentery Intestines Libraries Methanobrevibacter - classification Methanobrevibacter - genetics Methanobrevibacter - isolation & purification Microbiology Microbiota Microorganisms Middle Aged Molecular Sequence Data mucosa nucleotide sequences Phylogenetics Phylogeny Polymerase Chain Reaction Ribonucleic acid Ribosomal DNA ribosomal RNA RNA RNA, Ribosomal, 16S - genetics Vertebrates: digestive system
Title	Diversity of the Human Intestinal Microbial Flora
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