Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma
Mycoparasitism, a lifestyle where one fungus is parasitic on another fungus, has special relevance when the prey is a plant pathogen, providing a strategy for biological control of pests for plant protection. Probably, the most studied biocontrol agents are species of the genus Hypocrea/Trichoderma....
Saved in:
| Published in | Genome Biology Vol. 12; no. 4; p. R40 |
|---|---|
| Main Authors | , |
| Format | Journal Article |
| Language | English |
| Published |
England
BioMed Central
18.04.2011
|
| Subjects | |
| Online Access | Get full text |
| ISSN | 1474-760X 1465-6906 1474-7596 1474-760X 1465-6914 |
| DOI | 10.1186/gb-2011-12-4-r40 |
Cover
Loading…
| Abstract | Mycoparasitism, a lifestyle where one fungus is parasitic on another fungus, has special relevance when the prey is a plant pathogen, providing a strategy for biological control of pests for plant protection. Probably, the most studied biocontrol agents are species of the genus Hypocrea/Trichoderma.
Here we report an analysis of the genome sequences of the two biocontrol species Trichoderma atroviride (teleomorph Hypocrea atroviridis) and Trichoderma virens (formerly Gliocladium virens, teleomorph Hypocrea virens), and a comparison with Trichoderma reesei (teleomorph Hypocrea jecorina). These three Trichoderma species display a remarkable conservation of gene order (78 to 96%), and a lack of active mobile elements probably due to repeat-induced point mutation. Several gene families are expanded in the two mycoparasitic species relative to T. reesei or other ascomycetes, and are overrepresented in non-syntenic genome regions. A phylogenetic analysis shows that T. reesei and T. virens are derived relative to T. atroviride. The mycoparasitism-specific genes thus arose in a common Trichoderma ancestor but were subsequently lost in T. reesei.
The data offer a better understanding of mycoparasitism, and thus enforce the development of improved biocontrol strains for efficient and environmentally friendly protection of plants. |
|---|---|
| AbstractList | BACKGROUND: Mycoparasitism, a lifestyle where one fungus is parasitic on another fungus, has special relevance when the prey is a plant pathogen, providing a strategy for biological control of pests for plant protection. Probably, the most studied biocontrol agents are species of the genus Hypocrea/Trichoderma. RESULTS: Here we report an analysis of the genome sequences of the two biocontrol species Trichoderma atroviride (teleomorph Hypocrea atroviridis) and Trichoderma virens (formerly Gliocladium virens, teleomorph Hypocrea virens), and a comparison with Trichoderma reesei (teleomorph Hypocrea jecorina). These three Trichoderma species display a remarkable conservation of gene order (78 to 96%), and a lack of active mobile elements probably due to repeat-induced point mutation. Several gene families are expanded in the two mycoparasitic species relative to T. reesei or other ascomycetes, and are overrepresented in non-syntenic genome regions. A phylogenetic analysis shows that T. reesei and T. virens are derived relative to T. atroviride. The mycoparasitism-specific genes thus arose in a common Trichoderma ancestor but were subsequently lost in T. reesei. CONCLUSIONS: The data offer a better understanding of mycoparasitism, and thus enforce the development of improved biocontrol strains for efficient and environmentally friendly protection of plants. Background: Mycoparasitism, a lifestyle where one fungus is parasitic on another fungus, has special relevance when the prey is a plant pathogen, providing a strategy for biological control of pests for plant protection. Probably, the most studied biocontrol agents are species of the genus Hypocrea/Trichoderma. Results: Here we report an analysis of the genome sequences of the two biocontrol species Trichoderma atroviride (teleomorph Hypocrea atroviridis) and Trichoderma virens (formerly Gliocladium virens, teleomorph Hypocrea virens), and a comparison with Trichoderma reesei (teleomorph Hypocrea jecorina). These three Trichoderma species display a remarkable conservation of gene order (78 to 96%), and a lack of active mobile elements probably due to repeat-induced point mutation. Several gene families are expanded in the two mycoparasitic species relative to T. reesei or other ascomycetes, and are overrepresented in non-syntenic genome regions. A phylogenetic analysis shows that T. reesei and T. virens are derived relative to T. atroviride. The mycoparasitism-specific genes thus arose in a common Trichoderma ancestor but were subsequently lost in T. reesei. Conclusions: The data offer a better understanding of mycoparasitism, and thus enforce the development of improved biocontrol strains for efficient and environmentally friendly protection of plants Mycoparasitism, a lifestyle where one fungus is parasitic on another fungus, has special relevance when the prey is a plant pathogen, providing a strategy for biological control of pests for plant protection. Probably, the most studied biocontrol agents are species of the genus Hypocrea/Trichoderma.BACKGROUNDMycoparasitism, a lifestyle where one fungus is parasitic on another fungus, has special relevance when the prey is a plant pathogen, providing a strategy for biological control of pests for plant protection. Probably, the most studied biocontrol agents are species of the genus Hypocrea/Trichoderma.Here we report an analysis of the genome sequences of the two biocontrol species Trichoderma atroviride (teleomorph Hypocrea atroviridis) and Trichoderma virens (formerly Gliocladium virens, teleomorph Hypocrea virens), and a comparison with Trichoderma reesei (teleomorph Hypocrea jecorina). These three Trichoderma species display a remarkable conservation of gene order (78 to 96%), and a lack of active mobile elements probably due to repeat-induced point mutation. Several gene families are expanded in the two mycoparasitic species relative to T. reesei or other ascomycetes, and are overrepresented in non-syntenic genome regions. A phylogenetic analysis shows that T. reesei and T. virens are derived relative to T. atroviride. The mycoparasitism-specific genes thus arose in a common Trichoderma ancestor but were subsequently lost in T. reesei.RESULTSHere we report an analysis of the genome sequences of the two biocontrol species Trichoderma atroviride (teleomorph Hypocrea atroviridis) and Trichoderma virens (formerly Gliocladium virens, teleomorph Hypocrea virens), and a comparison with Trichoderma reesei (teleomorph Hypocrea jecorina). These three Trichoderma species display a remarkable conservation of gene order (78 to 96%), and a lack of active mobile elements probably due to repeat-induced point mutation. Several gene families are expanded in the two mycoparasitic species relative to T. reesei or other ascomycetes, and are overrepresented in non-syntenic genome regions. A phylogenetic analysis shows that T. reesei and T. virens are derived relative to T. atroviride. The mycoparasitism-specific genes thus arose in a common Trichoderma ancestor but were subsequently lost in T. reesei.The data offer a better understanding of mycoparasitism, and thus enforce the development of improved biocontrol strains for efficient and environmentally friendly protection of plants.CONCLUSIONSThe data offer a better understanding of mycoparasitism, and thus enforce the development of improved biocontrol strains for efficient and environmentally friendly protection of plants. Mycoparasitism, a lifestyle where one fungus is parasitic on another fungus, has special relevance when the prey is a plant pathogen, providing a strategy for biological control of pests for plant protection. Probably, the most studied biocontrol agents are species of the genus Hypocrea/Trichoderma. Here we report an analysis of the genome sequences of the two biocontrol species Trichoderma atroviride (teleomorph Hypocrea atroviridis) and Trichoderma virens (formerly Gliocladium virens, teleomorph Hypocrea virens), and a comparison with Trichoderma reesei (teleomorph Hypocrea jecorina). These three Trichoderma species display a remarkable conservation of gene order (78 to 96%), and a lack of active mobile elements probably due to repeat-induced point mutation. Several gene families are expanded in the two mycoparasitic species relative to T. reesei or other ascomycetes, and are overrepresented in non-syntenic genome regions. A phylogenetic analysis shows that T. reesei and T. virens are derived relative to T. atroviride. The mycoparasitism-specific genes thus arose in a common Trichoderma ancestor but were subsequently lost in T. reesei. The data offer a better understanding of mycoparasitism, and thus enforce the development of improved biocontrol strains for efficient and environmentally friendly protection of plants. |
| ArticleNumber | R40 |
| Author | Kubichek, C.P Tamayo Ramos, J.A |
| AuthorAffiliation | 4 Centro Hispanoluso de Investigaciones Agrarias (CIALE), Department of Microbiology and Genetics, University of Salamanca, Calle Del Duero, 12, Villamayor 37185, Spain 11 Institut de Biologie de l'École normale supérieure (IBENS), Institut National de la Santé et de la Recherche Médicale U1024, Centre National de la Recherche Scientifique UMR8197, 46, rue d'Ulm, Paris 75005, France 3 Broad Institute of MIT and Harvard, 301 Binney St, Cambridge, MA 02142, USA 19 Biotechnology Department, IFP Energies nouvelles, 1-4 avenue de Bois Préau, Rueil-Malmaison, 92852, France 15 Department of Biochemical Engineering, Faculty of Science and Technology, University of Debrecen, Egyetem tér 1, Debrecen, H-4010, Hungary 1 Area Gene Technology and Applied Biochemistry, Institute of Chemical Engineering Vienna University of Technology, Getreidemarkt 9, 1060 Vienna, Austria 6 Department of Biology, Technion - Israel Institute of Technology, Neve Shaanan Campus, Technion City, Haifa, 32000, Israel 20 Institute |
| AuthorAffiliation_xml | – name: 6 Department of Biology, Technion - Israel Institute of Technology, Neve Shaanan Campus, Technion City, Haifa, 32000, Israel – name: 11 Institut de Biologie de l'École normale supérieure (IBENS), Institut National de la Santé et de la Recherche Médicale U1024, Centre National de la Recherche Scientifique UMR8197, 46, rue d'Ulm, Paris 75005, France – name: 21 Wageningen University, Systems and Synthetic Biology, Fungal Systems Biology Group, Dreijenplein 10, 6703 HB Wageningen, The Netherlands – name: 8 Department of Microbiology, Faculty of Science and Informatics, University of Szeged, Közép fasor 52, Szeged, H-6726, Hungary – name: 22 Chemical and Biological Process Development Group, Pacific Northwest National Laboratory, 902 Battelle Boulevard, Richland, WA 99352, USA – name: 19 Biotechnology Department, IFP Energies nouvelles, 1-4 avenue de Bois Préau, Rueil-Malmaison, 92852, France – name: 4 Centro Hispanoluso de Investigaciones Agrarias (CIALE), Department of Microbiology and Genetics, University of Salamanca, Calle Del Duero, 12, Villamayor 37185, Spain – name: 9 DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA – name: 5 División de Biología Molecular, Instituto Potosino de Investigación Científica y Tecnológica, Camino a la Presa San José, No. 2055, Colonia Lomas 4a Sección, San Luis Potosí, SLP., 78216, México – name: 2 Laboratorio Nacional de Genómica para la Biodiversidad, Cinvestav Campus Guanajuato, Km. 9.6 Libramiento Norte, Carretera Irapuato-León, 36821 Irapuato, Mexico – name: 1 Area Gene Technology and Applied Biochemistry, Institute of Chemical Engineering Vienna University of Technology, Getreidemarkt 9, 1060 Vienna, Austria – name: 17 Architecture et Fonction des Macromolécules Biologiques, UMR6098, CNRS, Université de la Méditerranée, Case 932, 163 Avenue de Luminy, 13288 Marseille 13288, France – name: 13 TU Berlin, Institut für Chemie, FG Biochemie und Molekulare Biologie OE2, Franklinstr. 29, 10587 Berlin, Germany – name: 16 Instituto de Agroquímica y Tecnología de Alimentos, Consejo Superior de Investigaciones Científicas, Apartado de Correos 73, Burjassot (Valencia) E-46100, Spain – name: 10 School of Biological Sciences, University of Missouri- Kansas City, 5007 Rockhill Road, Kansas City, MO 64110, USA – name: 20 Institute of Sciences of Food Production (ISPA), National Research Council (CNR), Via Amendola 122/O, 70126 Bari, Italy – name: 15 Department of Biochemical Engineering, Faculty of Science and Technology, University of Debrecen, Egyetem tér 1, Debrecen, H-4010, Hungary – name: 18 Department of Biotechnology, Chemistry and Environmental Engineering, Aalborg University, Lautrupvang 15, DK-2750 Ballerup, Denmark – name: 3 Broad Institute of MIT and Harvard, 301 Binney St, Cambridge, MA 02142, USA – name: 14 Department of Plant Pathology and Microbiology Building 0444, Nagle Street, Texas A&M University College Station, TX 77843, USA – name: 12 Chemistry and Biomolecular Sciences, Macquarie University, Research Park Drive Building F7B, North Ryde, Sydney, NSW 2109, Australia – name: 7 Nuclear Agriculture and Biotechnology Division, Bhabha Atomic Research Centre, Trombay, Mumbai 400085, India |
| Author_xml | – sequence: 1 fullname: Kubichek, C.P – sequence: 2 fullname: Tamayo Ramos, J.A |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/21501500$$D View this record in MEDLINE/PubMed https://hal.sorbonne-universite.fr/hal-02879334$$DView record in HAL https://www.osti.gov/biblio/1154000$$D View this record in Osti.gov |
| BookMark | eNp9ks1v1DAQxSNURD_gzgUUcQEOgbHjJA4HpGoFFGkFlyJxG9nOZNdVYhc7u9X-9zhKi0oPlaLYcn7vZZ78TrMj5x1l2UsGHxiT9ceNLjgwVjBeiCIIeJKdMNGIoqnh99G9_XF2GuMVAGsFr59lx5xVkB44ya5WfrxWQU12T_mGnB8pj_RnR85QrpwaDtHGfOc6CtH4QDEfD8bPimgnG8dcxXzazqihOAU15IPtk8V0GCj3fX4ZrNn6pB7V8-xpr4ZIL27Xs-zX1y-Xq4ti_fPb99X5ujCyZFOhJPRKt7IRWkktO80bLhqCrjZat33FSpCqqzWvZGeavgdFoFXX6VpT2emqPMs-Lb43KgWyLr3QqWBsRK8sDlYHFQ54swvohnm53umIAhomRRJ_XsTpcKTOkJtD4XWw4yyaDf7_4uwWN36PJWdS1nUyeLMY-DhZjMZOZLbGO0dmQsYqAQAJer9A2wfeF-drnM-Ay6YtS7FniX17O1Hw6V7ihKONhoZBOfK7iC1AzZuWl4l89yjJ06858FbMMV_fj_lvhrtiJKBeABN8jIF6TElSS_yc2g7IAOcG4kbj3EBkHAWmBiYhPBDeeT8iebVIeuVRbUK6qB_rhKRZK1Y15V-XhOuo |
| CitedBy_id | crossref_primary_10_3390_microorganisms9081564 crossref_primary_10_1128_AEM_00930_14 crossref_primary_10_3390_jof9090895 crossref_primary_10_1099_mic_0_052274_0 crossref_primary_10_1016_j_biocontrol_2017_06_011 crossref_primary_10_1186_s41938_023_00746_4 crossref_primary_10_1016_j_biocontrol_2016_04_009 crossref_primary_10_1016_j_cropro_2013_07_014 crossref_primary_10_3390_microorganisms8101603 crossref_primary_10_1002_jobm_202300671 crossref_primary_10_1186_s12866_015_0564_8 crossref_primary_10_1371_journal_pone_0029425 crossref_primary_10_1099_mic_0_079210_0 crossref_primary_10_1007_s00344_021_10396_1 crossref_primary_10_1007_s13225_020_00464_4 crossref_primary_10_1016_j_micres_2024_127907 crossref_primary_10_1111_jam_14751 crossref_primary_10_1371_journal_pone_0111636 crossref_primary_10_3390_su141912786 crossref_primary_10_1128_AEM_01132_13 crossref_primary_10_1016_j_fgb_2019_103292 crossref_primary_10_3389_fmicb_2019_01434 crossref_primary_10_1016_j_jbiotec_2021_05_001 crossref_primary_10_3389_fmicb_2021_654855 crossref_primary_10_1186_s13568_018_0618_z crossref_primary_10_1007_s00253_017_8731_5 crossref_primary_10_3390_microorganisms9050920 crossref_primary_10_3389_fmicb_2022_1075327 crossref_primary_10_1016_j_enzmictec_2018_02_002 crossref_primary_10_5598_imafungus_2015_06_01_14 crossref_primary_10_1534_g3_113_006262 crossref_primary_10_1371_journal_pone_0193872 crossref_primary_10_1016_j_fgb_2013_05_003 crossref_primary_10_1155_2018_1974151 crossref_primary_10_1371_journal_pone_0120119 crossref_primary_10_1093_gbe_evx242 crossref_primary_10_3389_fmicb_2023_1141087 crossref_primary_10_3390_plants12040887 crossref_primary_10_1094_PDIS_08_19_1676_RE crossref_primary_10_1128_AEM_01819_21 crossref_primary_10_1007_s00425_022_04036_5 crossref_primary_10_1094_MPMI_04_19_0092_R crossref_primary_10_1016_j_tibtech_2016_06_003 crossref_primary_10_1016_j_fbr_2016_05_001 crossref_primary_10_1016_j_enzmictec_2017_08_007 crossref_primary_10_1007_s00253_016_7305_2 crossref_primary_10_1016_j_funbio_2018_10_001 crossref_primary_10_1128_spectrum_03165_23 crossref_primary_10_3389_ffunb_2021_718557 crossref_primary_10_1016_j_fgb_2012_02_004 crossref_primary_10_3390_plants11030384 crossref_primary_10_3389_fmicb_2020_02004 crossref_primary_10_1134_S002626171602003X crossref_primary_10_3389_fpls_2023_1228749 crossref_primary_10_1128_AEM_00989_13 crossref_primary_10_1111_1751_7915_14126 crossref_primary_10_3389_fmicb_2019_02231 crossref_primary_10_1111_j_1574_6968_2012_02665_x crossref_primary_10_1177_1934578X1601100401 crossref_primary_10_1002_jobm_201400317 crossref_primary_10_1016_j_jbiotec_2016_03_049 crossref_primary_10_3389_fmicb_2020_01030 crossref_primary_10_1186_gb_2011_12_11_r116 crossref_primary_10_3390_pathogens9100860 crossref_primary_10_1016_j_funbio_2022_05_003 crossref_primary_10_5812_ijb_13869 crossref_primary_10_1186_1756_0500_5_641 crossref_primary_10_1186_s12862_016_0834_6 crossref_primary_10_1080_21501203_2017_1281849 crossref_primary_10_1016_j_funbio_2018_09_003 crossref_primary_10_3390_biom3030612 crossref_primary_10_3389_fmicb_2019_01030 crossref_primary_10_1016_j_micres_2023_127564 crossref_primary_10_1080_07388551_2024_2370341 crossref_primary_10_1155_2016_8329513 crossref_primary_10_1051_bioconf_20202100021 crossref_primary_10_1371_journal_ppat_1008320 crossref_primary_10_3390_metabo12111100 crossref_primary_10_3852_14_147 crossref_primary_10_3390_pathogens9100834 crossref_primary_10_1002_jsfa_10803 crossref_primary_10_1093_femsle_fnaf021 crossref_primary_10_1371_journal_pgen_1003496 crossref_primary_10_1093_gbe_evw089 crossref_primary_10_1590_1678_4685_gmb_2017_0363 crossref_primary_10_1093_femsec_fiw036 crossref_primary_10_3389_fmicb_2019_01120 crossref_primary_10_3390_f12070945 crossref_primary_10_1186_s12864_019_5680_7 crossref_primary_10_1016_j_fgb_2016_04_005 crossref_primary_10_5897_AJMR2013_6231 crossref_primary_10_1016_j_ram_2023_06_005 crossref_primary_10_3390_crops2020010 crossref_primary_10_1186_s13068_016_0488_z crossref_primary_10_1007_s10526_015_9686_z crossref_primary_10_1016_j_aoas_2020_09_003 crossref_primary_10_1371_journal_pone_0034854 crossref_primary_10_1099_mic_0_052035_0 crossref_primary_10_1371_journal_pone_0289280 crossref_primary_10_1002_pmic_201400546 crossref_primary_10_1186_s12864_015_1812_x crossref_primary_10_1186_s12864_016_3174_4 crossref_primary_10_1007_s42360_024_00737_x crossref_primary_10_3390_pathogens12020264 crossref_primary_10_1007_s10343_024_00976_y crossref_primary_10_1016_j_jia_2024_01_030 crossref_primary_10_1016_j_sajb_2022_01_036 crossref_primary_10_1094_PHYTO_11_22_0405_KD crossref_primary_10_1016_j_funbio_2019_06_010 crossref_primary_10_1016_j_tim_2022_08_011 crossref_primary_10_3389_fmicb_2020_00785 crossref_primary_10_1128_spectrum_04626_22 crossref_primary_10_3389_fmicb_2018_02614 crossref_primary_10_1126_science_aaf3165 crossref_primary_10_1007_s00253_019_10209_2 crossref_primary_10_1128_AEM_06027_11 crossref_primary_10_3390_plants9060762 crossref_primary_10_1016_j_biocontrol_2023_105213 crossref_primary_10_1007_s00253_011_3723_3 crossref_primary_10_3389_fmicb_2019_00891 crossref_primary_10_1016_j_coesh_2024_100566 crossref_primary_10_1093_g3journal_jkae006 crossref_primary_10_3389_fmicb_2021_601113 crossref_primary_10_1111_jph_12202 crossref_primary_10_1146_annurev_phyto_082712_102353 crossref_primary_10_1007_s00253_015_6763_2 crossref_primary_10_3389_ffunb_2024_1486601 crossref_primary_10_3389_fmicb_2018_02844 crossref_primary_10_1007_s00438_023_02013_5 crossref_primary_10_1007_s00203_024_04091_4 crossref_primary_10_1128_EC_00103_13 crossref_primary_10_3390_plants12081694 crossref_primary_10_1007_s11557_022_01811_2 crossref_primary_10_1016_j_biocontrol_2023_105327 crossref_primary_10_1186_1754_6834_5_1 crossref_primary_10_1016_j_micres_2024_127621 crossref_primary_10_1038_s41579_022_00819_5 crossref_primary_10_2144_btn_2019_0152 crossref_primary_10_3762_bjoc_15_202 crossref_primary_10_3389_fpls_2023_1145715 crossref_primary_10_1007_s42360_021_00352_0 crossref_primary_10_1038_s41598_020_80186_4 crossref_primary_10_1038_srep00483 crossref_primary_10_3390_jof9040411 crossref_primary_10_1111_mpp_12141 crossref_primary_10_3389_fmicb_2020_00200 crossref_primary_10_1094_MPMI_06_20_0163_A crossref_primary_10_1111_nph_19582 crossref_primary_10_1016_j_fgb_2017_07_005 crossref_primary_10_1016_j_biocontrol_2022_105037 crossref_primary_10_1186_1471_2164_15_627 crossref_primary_10_3390_pathogens9030232 crossref_primary_10_1007_s13225_013_0276_z crossref_primary_10_1016_j_funeco_2022_101140 crossref_primary_10_1016_j_pmpp_2017_07_005 crossref_primary_10_1007_s11274_017_2319_1 crossref_primary_10_1016_j_jplph_2012_07_006 crossref_primary_10_1128_aem_00681_24 crossref_primary_10_3389_ffunb_2022_1002161 crossref_primary_10_3390_jof8040372 crossref_primary_10_1016_j_funeco_2020_100944 crossref_primary_10_3389_fmicb_2017_00790 crossref_primary_10_1107_S2053230X20007025 crossref_primary_10_1186_s12934_023_02151_w crossref_primary_10_1186_s12866_014_0333_0 crossref_primary_10_3390_plants12213761 crossref_primary_10_1093_gbe_evu251 crossref_primary_10_1007_s10142_015_0456_x crossref_primary_10_1093_gbe_evu018 crossref_primary_10_1007_s42161_022_01063_9 crossref_primary_10_1111_brv_12510 crossref_primary_10_1080_21501203_2011_584577 crossref_primary_10_3390_plants11020180 crossref_primary_10_1007_s12223_015_0385_z crossref_primary_10_3389_fmicb_2016_00575 crossref_primary_10_3389_fmicb_2022_1033824 crossref_primary_10_1007_s00253_013_5344_5 crossref_primary_10_1093_gbe_evaf015 crossref_primary_10_1111_mmi_13256 crossref_primary_10_1016_j_fbr_2017_12_001 crossref_primary_10_1128_AEM_01578_17 crossref_primary_10_1186_s40529_022_00344_x crossref_primary_10_1111_1462_2920_13080 crossref_primary_10_3390_ijms25105172 crossref_primary_10_1186_s12934_019_1108_y crossref_primary_10_3389_fpls_2017_00172 crossref_primary_10_1016_j_micpath_2019_01_042 crossref_primary_10_1111_jam_13920 crossref_primary_10_1111_mpp_12189 crossref_primary_10_3389_fpls_2020_583539 crossref_primary_10_33073_pjm_2023_041 crossref_primary_10_1186_s13068_017_0897_7 crossref_primary_10_3390_jof10020152 crossref_primary_10_1016_j_fgb_2016_07_008 crossref_primary_10_1007_s12275_013_2545_7 crossref_primary_10_1111_mmi_12261 crossref_primary_10_1186_s13068_017_0789_x crossref_primary_10_1099_mic_0_052613_0 crossref_primary_10_3390_microbiolres14030067 crossref_primary_10_1093_gbe_evv037 crossref_primary_10_1128_spectrum_03097_23 crossref_primary_10_1111_mmi_13355 crossref_primary_10_1128_genomeA_01747_15 crossref_primary_10_1021_acs_jafc_1c05622 crossref_primary_10_1139_gen_2022_0092 crossref_primary_10_1186_1471_2164_15_822 crossref_primary_10_1186_1471_2164_15_943 crossref_primary_10_1371_journal_pcbi_1009372 crossref_primary_10_1007_s13762_024_05957_2 crossref_primary_10_3389_fgene_2022_807243 crossref_primary_10_1128_Spectrum_00663_21 crossref_primary_10_3390_microorganisms8101455 crossref_primary_10_1007_s13353_015_0326_1 crossref_primary_10_1093_gbe_evu292 crossref_primary_10_1186_s13068_017_0841_x crossref_primary_10_1016_j_bbrc_2020_06_040 crossref_primary_10_1016_j_pestbp_2018_02_006 crossref_primary_10_1007_s10482_013_9975_4 crossref_primary_10_1016_j_fgb_2017_01_002 crossref_primary_10_1128_msystems_00544_21 crossref_primary_10_1007_s13258_016_0512_5 crossref_primary_10_1186_1471_2164_13_525 crossref_primary_10_1186_s12866_018_1310_9 crossref_primary_10_1186_s12934_022_01764_x crossref_primary_10_1080_19420889_2020_1829267 crossref_primary_10_1016_j_ijbiomac_2019_04_177 crossref_primary_10_1186_s40694_018_0056_3 crossref_primary_10_3389_ffunb_2023_1214537 crossref_primary_10_1016_j_pbi_2014_05_013 crossref_primary_10_1016_j_biocontrol_2014_04_004 crossref_primary_10_1371_journal_pone_0055295 crossref_primary_10_1099_mic_0_053462_0 crossref_primary_10_3390_jof8070704 crossref_primary_10_3390_jof11010009 crossref_primary_10_1128_AEM_02350_19 crossref_primary_10_1186_s43008_023_00121_w crossref_primary_10_1016_j_biocontrol_2021_104634 crossref_primary_10_1371_journal_pone_0067144 crossref_primary_10_1007_s42360_018_0067_2 crossref_primary_10_1099_mgen_0_000345 crossref_primary_10_3389_fagro_2022_932839 crossref_primary_10_1007_s13225_025_00550_5 crossref_primary_10_1186_s12864_017_4181_9 crossref_primary_10_1186_s41938_024_00823_2 crossref_primary_10_1186_s12864_015_1777_9 crossref_primary_10_1016_j_bbrc_2014_05_017 crossref_primary_10_1111_1462_2920_15748 crossref_primary_10_1111_eva_12609 crossref_primary_10_1016_j_fbr_2021_12_004 crossref_primary_10_3390_cells10123588 crossref_primary_10_3390_microbiolres15030084 crossref_primary_10_1016_j_biocontrol_2021_104620 crossref_primary_10_1016_j_biortech_2012_03_009 crossref_primary_10_1016_j_pmpp_2024_102419 crossref_primary_10_1371_journal_ppat_1003475 crossref_primary_10_1016_j_biocontrol_2024_105473 crossref_primary_10_1038_srep17998 crossref_primary_10_1515_opag_2020_0031 crossref_primary_10_1016_j_btre_2024_e00859 crossref_primary_10_3389_fmicb_2018_01599 crossref_primary_10_1007_s00253_014_5698_3 crossref_primary_10_1111_nph_13648 crossref_primary_10_18311_jbc_2024_45717 crossref_primary_10_1534_g3_116_027045 crossref_primary_10_18311_jbc_2021_26283 crossref_primary_10_1128_spectrum_01793_22 crossref_primary_10_1038_s41598_018_26328_1 crossref_primary_10_1093_gbe_evt208 crossref_primary_10_1371_journal_pone_0055185 crossref_primary_10_1128_spectrum_05228_22 crossref_primary_10_1590_1519_6984_260161 crossref_primary_10_3390_jof4010006 crossref_primary_10_1017_S0960258518000181 crossref_primary_10_1093_database_bax072 crossref_primary_10_1128_genomeA_00287_15 crossref_primary_10_3390_microorganisms12102007 crossref_primary_10_1186_s12862_018_1291_1 crossref_primary_10_33073_pjm_2021_016 crossref_primary_10_1007_s00203_021_02420_5 crossref_primary_10_1016_j_jare_2022_09_010 crossref_primary_10_1186_s13068_015_0311_2 crossref_primary_10_1016_j_funbio_2012_04_015 crossref_primary_10_1038_s41598_018_19671_w crossref_primary_10_1016_S2095_3119_19_62593_1 crossref_primary_10_1128_spectrum_03495_23 crossref_primary_10_1111_1462_2920_15413 crossref_primary_10_1371_journal_pone_0094203 crossref_primary_10_1094_PHYTO_03_16_0139_R crossref_primary_10_1016_j_simyco_2014_11_001 crossref_primary_10_1007_s10295_013_1366_3 crossref_primary_10_1111_jph_12414 crossref_primary_10_3389_fmicb_2020_596719 crossref_primary_10_3389_fmicb_2020_00992 crossref_primary_10_1099_mic_0_053629_0 crossref_primary_10_1007_s00253_011_3473_2 crossref_primary_10_1073_pnas_1518501113 crossref_primary_10_3390_jof8080854 crossref_primary_10_1038_s41598_023_47027_6 crossref_primary_10_1186_1471_2164_15_214 crossref_primary_10_1016_j_biocontrol_2017_11_006 crossref_primary_10_1111_febs_12362 crossref_primary_10_1186_s13068_018_1314_6 crossref_primary_10_3389_fmicb_2022_884469 crossref_primary_10_3390_microorganisms10040753 crossref_primary_10_1094_PHYTO_01_14_0013_R crossref_primary_10_1584_jpestics_W22_10 crossref_primary_10_1016_j_jbiotec_2012_05_020 crossref_primary_10_1080_09583157_2017_1297771 crossref_primary_10_1016_j_micres_2020_126595 crossref_primary_10_1128_AEM_03375_13 crossref_primary_10_1016_j_funbio_2014_06_004 crossref_primary_10_1016_j_micres_2014_04_006 crossref_primary_10_1007_s13313_016_0457_9 crossref_primary_10_1186_1471_2229_14_46 crossref_primary_10_1016_j_biotechadv_2023_108223 crossref_primary_10_1094_PHYTO_03_19_0093_R crossref_primary_10_3390_agriculture13102022 crossref_primary_10_1016_j_fbr_2021_11_004 crossref_primary_10_3389_fmicb_2017_01602 crossref_primary_10_1007_s13199_024_00996_2 crossref_primary_10_1016_j_fbr_2021_11_003 crossref_primary_10_1093_femsle_fnv036 crossref_primary_10_1128_mbio_00389_22 crossref_primary_10_1111_1758_2229_12221 crossref_primary_10_1016_j_hpj_2022_09_007 crossref_primary_10_3389_fmicb_2021_552301 crossref_primary_10_1007_s43450_021_00215_9 crossref_primary_10_3389_fevo_2021_808430 crossref_primary_10_1016_j_biocontrol_2020_104352 crossref_primary_10_1080_21655979_2019_1644854 crossref_primary_10_1099_mic_0_052118_0 crossref_primary_10_1186_1471_2164_15_318 crossref_primary_10_1016_j_pmpp_2021_101671 crossref_primary_10_7717_peerj_2023 crossref_primary_10_1007_s13225_019_00422_9 crossref_primary_10_1007_s44154_024_00168_8 crossref_primary_10_1094_PDIS_06_21_1313_RE crossref_primary_10_1111_nph_16530 crossref_primary_10_3390_plants12030432 crossref_primary_10_1016_j_fbr_2014_11_001 crossref_primary_10_1016_j_fbr_2018_11_001 crossref_primary_10_3390_microorganisms8060817 crossref_primary_10_3390_toxins14090629 crossref_primary_10_1016_j_funbio_2016_01_007 crossref_primary_10_1186_1471_2164_13_57 crossref_primary_10_7717_peerj_5401 crossref_primary_10_1186_s12864_014_1208_3 crossref_primary_10_1073_pnas_2301971120 crossref_primary_10_3389_ffunb_2022_892228 crossref_primary_10_3389_fmicb_2022_967885 crossref_primary_10_1186_s12864_018_5049_3 crossref_primary_10_1016_j_biocontrol_2015_04_018 crossref_primary_10_1371_journal_pone_0310850 crossref_primary_10_1186_s40694_021_00119_2 crossref_primary_10_1128_MMBR_00040_15 crossref_primary_10_1038_s41598_018_24686_4 crossref_primary_10_21448_ijsm_265981 crossref_primary_10_1016_j_cpb_2020_100189 crossref_primary_10_1016_j_plantsci_2014_03_005 crossref_primary_10_3390_catal12040437 crossref_primary_10_1186_1754_6834_7_41 crossref_primary_10_1128_microbiolspec_FUNK_0016_2016 crossref_primary_10_1111_jph_13070 crossref_primary_10_1128_CMR_00009_18 crossref_primary_10_1016_j_freeradbiomed_2021_04_013 crossref_primary_10_1099_mic_0_056424_0 crossref_primary_10_1038_s41598_017_01680_w crossref_primary_10_1099_mgen_0_000646 crossref_primary_10_3390_agronomy11122434 crossref_primary_10_1016_j_biocontrol_2016_06_006 crossref_primary_10_1002_tqem_22227 crossref_primary_10_3390_jof10100697 crossref_primary_10_1038_s41598_017_12863_w crossref_primary_10_2903_j_efsa_2020_6336 crossref_primary_10_3390_ijms22179359 crossref_primary_10_1099_mic_0_053140_0 crossref_primary_10_1021_cr500351c crossref_primary_10_1007_s13205_018_1314_z crossref_primary_10_5423_PPJ_OA_08_2022_0106 crossref_primary_10_1099_mic_0_052555_0 crossref_primary_10_3390_biom10050730 crossref_primary_10_1134_S0003683823603451 crossref_primary_10_1186_s13068_017_0825_x crossref_primary_10_1186_s12934_017_0680_2 crossref_primary_10_1128_genomeA_00647_15 crossref_primary_10_1002_jobm_201300821 crossref_primary_10_1007_s12088_012_0308_5 crossref_primary_10_1038_nrmicro2637 crossref_primary_10_3390_jof7110918 crossref_primary_10_1007_s10658_018_1461_4 crossref_primary_10_1111_aab_12227 crossref_primary_10_3390_f13071065 crossref_primary_10_15407_agrisp7_03_014 crossref_primary_10_1007_s10725_022_00951_5 crossref_primary_10_1074_mcp_M114_046607 crossref_primary_10_3389_fagro_2024_1386568 crossref_primary_10_3390_jof10100671 crossref_primary_10_1016_j_pmpp_2020_101551 crossref_primary_10_3389_ffunb_2023_1209265 crossref_primary_10_1099_mic_0_052159_0 crossref_primary_10_1186_1471_2164_14_138 crossref_primary_10_1128_aem_01537_24 crossref_primary_10_1016_j_biocontrol_2017_07_001 crossref_primary_10_3390_jof7010061 crossref_primary_10_1074_jbc_M112_427633 crossref_primary_10_3389_ffunb_2021_716511 crossref_primary_10_1186_1471_2180_13_108 crossref_primary_10_1038_srep37369 crossref_primary_10_3390_toxins12030152 crossref_primary_10_5194_bg_10_8083_2013 crossref_primary_10_3989_arbor_2016_782n6005 crossref_primary_10_1186_s12864_018_5399_x crossref_primary_10_3390_genes10020124 crossref_primary_10_1007_s13199_023_00913_z crossref_primary_10_1186_s12864_019_5651_z crossref_primary_10_4236_aim_2018_87040 crossref_primary_10_1007_s10658_023_02716_w crossref_primary_10_1139_cjm_2018_0224 crossref_primary_10_1186_1471_2164_14_121 crossref_primary_10_1094_PHYTO_07_18_0218_RVW crossref_primary_10_1128_spectrum_03024_22 crossref_primary_10_1371_journal_pgen_1007322 crossref_primary_10_1007_s00284_013_0494_3 crossref_primary_10_1016_j_pbi_2014_05_001 crossref_primary_10_51372_bioagro343_1 crossref_primary_10_1007_s00284_018_1566_1 crossref_primary_10_1128_AEM_02339_12 crossref_primary_10_1016_j_ecocom_2021_100978 |
| Cites_doi | 10.1016/S0959-8049(97)00067-1 10.1101/gr.10.4.516 10.1016/j.vetmic.2009.06.023 10.1152/physrev.2001.81.3.1353 10.1038/75556 10.1079/9781845932657.0000 10.1002/prot.21564 10.1093/nar/gkh063 10.1016/j.fgb.2008.07.021 10.1101/gr.10.4.547 10.1073/pnas.0904936106 10.1093/genetics/149.4.1787 10.1007/s00253-003-1538-6 10.1111/j.1365-2958.2005.05010.x 10.1080/00275514.2001.12063245 10.1038/nature06556 10.1093/bioinformatics/btp187 10.1006/geno.2002.7020 10.1101/gr.9.9.868 10.1099/mic.0.2008/018440-0 10.1016/S0960-9822(06)00041-8 10.1186/1471-2148-8-4 10.1186/gb-2008-9-5-r77 10.1080/15572536.2006.11832862 10.1126/science.1143708 10.1146/annurev-phyto-073009-114314 10.1104/pp.109.141291 10.1093/bioinformatics/bti1003 10.1104/pp.108.116293 10.1093/bioinformatics/btm076 10.1128/EC.00399-06 10.1002/j.1460-2075.1985.tb03949.x 10.1093/genetics/161.4.1483 10.1111/j.1365-2958.2007.05872.x 10.2307/3761959 10.1093/nar/gkn663 10.1038/nature01564 10.1186/1471-2164-10-567 10.1016/j.bbrc.2006.09.120 10.1094/PHYTO-96-0190 10.1038/nrmicro797 10.1002/pro.85 10.1074/jbc.274.20.14288 10.1016/S0021-9258(17)36217-8 10.1128/MMBR.68.1.1-108.2004 10.1371/journal.pone.0001097 10.1016/j.tim.2009.01.002 10.1094/MPMI-19-0838 10.1046/j.1469-8137.2002.00487.x 10.1186/1471-2148-8-300 10.1104/pp.107.103689 10.1093/nar/27.2.573 10.1093/bioinformatics/17.9.847 10.1186/gb-2004-5-2-r7 10.1073/pnas.81.3.814 10.2307/3761493 10.1038/nature03449 10.1093/oxfordjournals.molbev.a025811 10.1016/j.femsle.2005.09.014 10.1371/journal.pgen.0020032 10.1186/1471-2164-9-229 10.1093/nar/15.3.1281 10.1111/j.1462-2920.2008.01736.x 10.1146/annurev-phyto-073009-114450 10.1016/S0022-2836(05)80360-2 10.1094/PDIS.2003.87.1.4 10.1016/j.tibs.2010.04.003 10.1101/gr.1224503 10.1016/j.fbr.2008.03.002 10.1186/1471-2148-10-94 10.1371/journal.pgen.1000046 10.1111/j.1365-2958.2007.05671.x 10.1016/S0960-9822(99)80019-0 10.1038/nbt1403 10.1038/nature04341 10.1111/j.1364-3703.2006.00335.x 10.1038/35039531 10.1016/j.fgb.2008.07.022 10.1007/S10267-006-0279-7 10.1093/nar/30.7.1575 10.1073/pnas.240462997 |
| ContentType | Journal Article |
| Copyright | 2011 Kubicek et al.; licensee BioMed Central Ltd. Attribution Copyright ©2011 Kubicek et al.; licensee BioMed Central Ltd. 2011 Kubicek et al.; licensee BioMed Central Ltd. Wageningen University & Research |
| Copyright_xml | – notice: 2011 Kubicek et al.; licensee BioMed Central Ltd. – notice: Attribution – notice: Copyright ©2011 Kubicek et al.; licensee BioMed Central Ltd. 2011 Kubicek et al.; licensee BioMed Central Ltd. – notice: Wageningen University & Research |
| CorporateAuthor | Joint Genome Institute (JGI) |
| CorporateAuthor_xml | – name: Joint Genome Institute (JGI) |
| DBID | FBQ AAYXX CITATION CGR CUY CVF ECM EIF NPM 7S9 L.6 7X8 1XC VOOES OTOTI 5PM QVL |
| DOI | 10.1186/gb-2011-12-4-r40 |
| DatabaseName | AGRIS CrossRef Medline MEDLINE MEDLINE (Ovid) MEDLINE MEDLINE PubMed AGRICOLA AGRICOLA - Academic MEDLINE - Academic Hyper Article en Ligne (HAL) Hyper Article en Ligne (HAL) (Open Access) OSTI.GOV PubMed Central (Full Participant titles) NARCIS:Publications |
| DatabaseTitle | CrossRef MEDLINE Medline Complete MEDLINE with Full Text PubMed MEDLINE (Ovid) AGRICOLA AGRICOLA - Academic MEDLINE - Academic |
| DatabaseTitleList | AGRICOLA MEDLINE - Academic MEDLINE |
| Database_xml | – sequence: 1 dbid: NPM name: PubMed url: https://proxy.k.utb.cz/login?url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed sourceTypes: Index Database – sequence: 2 dbid: EIF name: MEDLINE url: https://proxy.k.utb.cz/login?url=https://www.webofscience.com/wos/medline/basic-search sourceTypes: Index Database – sequence: 3 dbid: FBQ name: AGRIS url: http://www.fao.org/agris/Centre.asp?Menu_1ID=DB&Menu_2ID=DB1&Language=EN&Content=http://www.fao.org/agris/search?Language=EN sourceTypes: Publisher |
| DeliveryMethod | fulltext_linktorsrc |
| Discipline | Biology |
| EISSN | 1474-760X 1465-6914 |
| EndPage | R40 |
| ExternalDocumentID | oai_library_wur_nl_wurpubs_407184 PMC3218866 1154000 oai_HAL_hal_02879334v1 21501500 10_1186_gb_2011_12_4_r40 NL2012025157 |
| Genre | Research Support, U.S. Gov't, Non-P.H.S Research Support, Non-U.S. Gov't Journal Article |
| GrantInformation_xml | – fundername: Austrian Science Fund FWF grantid: T 390 – fundername: Austrian Science Fund FWF grantid: P 20559 – fundername: Austrian Science Fund FWF grantid: P 18109 – fundername: Austrian Science Fund FWF grantid: V 139 |
| GroupedDBID | --- 123 29H 3V. 4.4 53G 5GY 5VS 7X7 88E 8FE 8FH 8FI 8FJ 8R4 8R5 AAFWJ AAJSJ ABUWG ABVAZ ACGFO ACGFS ACJQM ACPRK ACRMQ ADBBV ADINQ AEGXH AFGXO AFKRA AFNRJ AFPKN AHBYD AHSBF AIAGR ALMA_UNASSIGNED_HOLDINGS AMKLP AMTXH AOIAM AOIJS BAPOH BAWUL BBNVY BCNDV BENPR BFQNJ BHPHI BMC BPHCQ BVXVI C24 C6C CCPQU EBD EBS EMOBN FBQ FYUFA GROUPED_DOAJ GX1 HCIFZ HMCUK HYE IAO IGS IHR ISR KPI LK8 M1P M7P PIMPY PQQKQ PROAC PSQYO ROL RPM RSV SJN SOJ SV3 UKHRP 0R~ AAHBH AASML AAYXX ADUKV ALIPV CITATION EBLON ITC CGR CUY CVF ECM EIF H13 NPM PHGZM PHGZT PJZUB PPXIY PQGLB 7S9 L.6 7X8 1XC PUEGO VOOES 2WC AENEX C1A CS3 DIK E3Z EJD F5P HZ~ KQ8 O5R O5S O9- OK1 OTOTI RBZ SBL TR2 WOQ ZA5 5PM - 1AW AAPBV ADACO BBAFP FH7 LI0 PQEST PQUKI QVL |
| ID | FETCH-LOGICAL-c831t-a80fab9874ba8b8db27247e0d6cbb9f51308ad6b258dc7ff0ae0baddb6be3db53 |
| ISSN | 1474-760X 1465-6906 1474-7596 |
| IngestDate | Tue Jan 05 18:10:45 EST 2021 Thu Aug 21 14:11:18 EDT 2025 Thu May 18 18:36:45 EDT 2023 Tue Sep 02 06:29:38 EDT 2025 Fri Jul 11 06:23:21 EDT 2025 Fri Jul 11 00:15:57 EDT 2025 Mon Jul 21 06:04:06 EDT 2025 Thu Apr 24 23:03:39 EDT 2025 Tue Jul 01 03:10:32 EDT 2025 Wed Dec 27 19:21:38 EST 2023 |
| IsDoiOpenAccess | true |
| IsOpenAccess | true |
| IsPeerReviewed | true |
| IsScholarly | true |
| Issue | 4 |
| Language | English |
| License | 2011 Kubicek et al.; licensee BioMed Central Ltd. Attribution: http://creativecommons.org/licenses/by This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
| LinkModel | OpenURL |
| MergedId | FETCHMERGED-LOGICAL-c831t-a80fab9874ba8b8db27247e0d6cbb9f51308ad6b258dc7ff0ae0baddb6be3db53 |
| Notes | A00 201107184 http://edepot.wur.nl/172453 ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 23 USDOE Office of Science (SC), Biological and Environmental Research (BER) |
| ORCID | 0000-0002-3136-8903 0000-0002-0534-7797 |
| OpenAccessLink | http://dx.doi.org/10.1186/gb-2011-12-4-r40 |
| PMID | 21501500 |
| PQID | 2000202944 |
| PQPubID | 24069 |
| ParticipantIDs | wageningen_narcis_oai_library_wur_nl_wurpubs_407184 pubmedcentral_primary_oai_pubmedcentral_nih_gov_3218866 osti_scitechconnect_1154000 hal_primary_oai_HAL_hal_02879334v1 proquest_miscellaneous_900627923 proquest_miscellaneous_2000202944 pubmed_primary_21501500 crossref_citationtrail_10_1186_gb_2011_12_4_r40 crossref_primary_10_1186_gb_2011_12_4_r40 fao_agris_NL2012025157 |
| ProviderPackageCode | CITATION AAYXX QVL |
| PublicationCentury | 2000 |
| PublicationDate | 2011-04-18 |
| PublicationDateYYYYMMDD | 2011-04-18 |
| PublicationDate_xml | – month: 04 year: 2011 text: 2011-04-18 day: 18 |
| PublicationDecade | 2010 |
| PublicationPlace | England |
| PublicationPlace_xml | – name: England – name: United States |
| PublicationTitle | Genome Biology |
| PublicationTitleAlternate | Genome Biol |
| PublicationYear | 2011 |
| Publisher | BioMed Central |
| Publisher_xml | – name: BioMed Central |
| References | JE Galagan (9593_CR15) 2005; 438 RJ Wellinger (9593_CR30) 1997; 33 JP Latgé (9593_CR64) 2007; 66 RC Edgar (9593_CR19) 2005; 21 HA Wösten (9593_CR79) 1999; 9 PM Sharp (9593_CR32) 1987; 15 9593_CR77 EU Selker (9593_CR23) 2003; 422 EV Koonin (9593_CR52) 2004; 5 X Huang (9593_CR91) 1999; 9 RA Dean (9593_CR28) 2005; 434 9593_CR75 AA Salamov (9593_CR48) 2000; 10 Y Brotman (9593_CR76) 2008; 147 MC Hares (9593_CR71) 2008; 154 S Djonovic (9593_CR82) 2006; 19 NJ Talbot (9593_CR78) 1997; 7 LG Baker (9593_CR45) 2007; 6 M Kanehisa (9593_CR53) 2004; 32 L Li (9593_CR59) 2003; 13 P de Groot (9593_CR65) 2009; 46 SL Dodd (9593_CR11) 2003; 95 BS Margolin (9593_CR22) 1998; 149 JC Slot (9593_CR38) 2007; 2 WA Vargas (9593_CR67) 2009; 151 ND Fedorova (9593_CR17) 2008; 4 P Chaverri (9593_CR10) 2001; 93 CP Kubicek (9593_CR80) 2008; 8 GE Harman (9593_CR3) 2004; 2 PK Shiu (9593_CR35) 2002; 161 IS Druzhinina (9593_CR12) 2010; 10 G Berrocal-Tito (9593_CR89) 1999; 274 9593_CR21 A Viterbo (9593_CR81) 2006; 7 E Lieckfeldt (9593_CR66) 2000; 92 9593_CR63 F Martin (9593_CR42) 2008; 452 9593_CR60 IS Druzhinina (9593_CR9) 2006; 47 NE El Gueddari (9593_CR46) 2002; 156 PK Mukherjee (9593_CR85) 2006; 350 MC Limon (9593_CR26) 2004; 64 AY Rossmann (9593_CR37) 1999; 42 V Bennett (9593_CR39) 2001; 81 M Lorito (9593_CR7) 2010; 48 JC Detter (9593_CR90) 2002; 80 EM Zdobnov (9593_CR50) 2001; 17 TN Taylor (9593_CR1) 2005; 97 R de Jonge (9593_CR44) 2009; 17 9593_CR58 P Librado (9593_CR62) 2009; 25 S Berne (9593_CR69) 2009; 18 D Martinez (9593_CR8) 2008; 26 9593_CR55 9593_CR54 G Benson (9593_CR20) 1999; 27 A Münch (9593_CR29) 2008; 9 LH Freitas-Junior (9593_CR31) 2000; 407 SF Altschul (9593_CR74) 1990; 215 JDG Jones (9593_CR88) 1985; 4 V Seidl (9593_CR43) 2009; 10 M Rep (9593_CR84) 2005; 253 J Nadeau (9593_CR18) 1984; 81 V Seidl (9593_CR34) 2009; 106 H Goodrich-Blair (9593_CR70) 2007; 64 E Birney (9593_CR49) 2000; 10 M Shoresh (9593_CR6) 2010; 48 M Ashburner (9593_CR51) 2000; 25 Z Yang (9593_CR33) 1997; 14 BL Cantarel (9593_CR61) 2009; 37 JS Papadopoulos (9593_CR92) 2007; 23 9593_CR47 GE Harman (9593_CR5) 2006; 96 C Moreno-Hagelsieb (9593_CR57) 2008; 70 V Seidl (9593_CR25) 2008; 22 9593_CR87 C McNulty (9593_CR73) 2006; 59 D Karasova (9593_CR72) 2009; 139 G Fischer (9593_CR14) 2006; 2 AJ Enright (9593_CR24) 2002; 30 ES Martens-Uzunova (9593_CR68) 2009; 46 C Seoighe (9593_CR16) 2000; 97 S Djonovic (9593_CR83) 2007; 145 Q Migheli (9593_CR41) 2009; 11 CA Cuomo (9593_CR27) 2007; 317 KA Borkovich (9593_CR36) 2004; 68 D Armaleo (9593_CR86) 1985; 260 S Castillo-Ramirez (9593_CR56) 2008; 8 CU Stirnimann (9593_CR40) 2010; 35 C Vincent (9593_CR2) 2007 E Espagne (9593_CR13) 2008; 9 CR Howell (9593_CR4) 2003; 87 |
| References_xml | – volume: 33 start-page: 735 year: 1997 ident: 9593_CR30 publication-title: Eur J Cancer doi: 10.1016/S0959-8049(97)00067-1 – volume: 42 start-page: 1 year: 1999 ident: 9593_CR37 publication-title: Stud Mycol – volume: 10 start-page: 516 year: 2000 ident: 9593_CR48 publication-title: Genome Res doi: 10.1101/gr.10.4.516 – volume: 139 start-page: 304 year: 2009 ident: 9593_CR72 publication-title: Vet Microbiol doi: 10.1016/j.vetmic.2009.06.023 – volume: 81 start-page: 1353 year: 2001 ident: 9593_CR39 publication-title: Physiol Rev doi: 10.1152/physrev.2001.81.3.1353 – volume: 25 start-page: 25 year: 2000 ident: 9593_CR51 publication-title: Nat Genet doi: 10.1038/75556 – volume-title: Biological Control: A Global Perspective: Case Studies from Around the World year: 2007 ident: 9593_CR2 doi: 10.1079/9781845932657.0000 – volume: 70 start-page: 344 year: 2008 ident: 9593_CR57 publication-title: Proteins doi: 10.1002/prot.21564 – volume: 32 start-page: D277 year: 2004 ident: 9593_CR53 publication-title: Nucleic Acids Res doi: 10.1093/nar/gkh063 – volume: 46 start-page: S170 issue: Suppl 1 year: 2009 ident: 9593_CR68 publication-title: Fungal Genet Biol doi: 10.1016/j.fgb.2008.07.021 – volume: 10 start-page: 547 year: 2000 ident: 9593_CR49 publication-title: Genome Res doi: 10.1101/gr.10.4.547 – volume: 106 start-page: 13909 year: 2009 ident: 9593_CR34 publication-title: Proc Natl Acad Sci USA doi: 10.1073/pnas.0904936106 – volume: 149 start-page: 1787 year: 1998 ident: 9593_CR22 publication-title: Genetics doi: 10.1093/genetics/149.4.1787 – volume: 64 start-page: 675 year: 2004 ident: 9593_CR26 publication-title: Appl Microbiol Biotechnol doi: 10.1007/s00253-003-1538-6 – volume: 59 start-page: 907 year: 2006 ident: 9593_CR73 publication-title: Mol Microbiol doi: 10.1111/j.1365-2958.2005.05010.x – ident: 9593_CR55 – volume: 93 start-page: 1113 year: 2001 ident: 9593_CR10 publication-title: Mycologia doi: 10.1080/00275514.2001.12063245 – volume: 452 start-page: 88 year: 2008 ident: 9593_CR42 publication-title: Nature doi: 10.1038/nature06556 – volume: 25 start-page: 1451 year: 2009 ident: 9593_CR62 publication-title: Bioinformatics doi: 10.1093/bioinformatics/btp187 – volume: 80 start-page: 691 year: 2002 ident: 9593_CR90 publication-title: Genomics doi: 10.1006/geno.2002.7020 – volume: 9 start-page: 868 year: 1999 ident: 9593_CR91 publication-title: Genome Res doi: 10.1101/gr.9.9.868 – volume: 154 start-page: 3503 year: 2008 ident: 9593_CR71 publication-title: Microbiology doi: 10.1099/mic.0.2008/018440-0 – volume: 7 start-page: R78 year: 1997 ident: 9593_CR78 publication-title: Curr Biol doi: 10.1016/S0960-9822(06)00041-8 – volume: 8 start-page: 4 year: 2008 ident: 9593_CR80 publication-title: BMC Evol Biol doi: 10.1186/1471-2148-8-4 – volume: 9 start-page: R77 year: 2008 ident: 9593_CR13 publication-title: Genome Biol doi: 10.1186/gb-2008-9-5-r77 – volume: 97 start-page: 269 year: 2005 ident: 9593_CR1 publication-title: Mycologia doi: 10.1080/15572536.2006.11832862 – volume: 317 start-page: 1400 year: 2007 ident: 9593_CR27 publication-title: Science doi: 10.1126/science.1143708 – volume: 48 start-page: 395 year: 2010 ident: 9593_CR7 publication-title: Annu Rev Phytopathol doi: 10.1146/annurev-phyto-073009-114314 – volume: 151 start-page: 792 year: 2009 ident: 9593_CR67 publication-title: Plant Physiol doi: 10.1104/pp.109.141291 – volume: 21 start-page: i152 issue: Suppl 1 year: 2005 ident: 9593_CR19 publication-title: Bioinformatics doi: 10.1093/bioinformatics/bti1003 – volume: 147 start-page: 779 year: 2008 ident: 9593_CR76 publication-title: Plant Physiol doi: 10.1104/pp.108.116293 – volume: 23 start-page: 1073 year: 2007 ident: 9593_CR92 publication-title: Bioinformatics doi: 10.1093/bioinformatics/btm076 – ident: 9593_CR87 – volume: 6 start-page: 855 year: 2007 ident: 9593_CR45 publication-title: Eukaryotic Cell doi: 10.1128/EC.00399-06 – volume: 4 start-page: 2411 year: 1985 ident: 9593_CR88 publication-title: EMBO J doi: 10.1002/j.1460-2075.1985.tb03949.x – volume: 161 start-page: 1483 year: 2002 ident: 9593_CR35 publication-title: Genetics doi: 10.1093/genetics/161.4.1483 – volume: 66 start-page: 279 year: 2007 ident: 9593_CR64 publication-title: Mol Microbiol doi: 10.1111/j.1365-2958.2007.05872.x – volume: 95 start-page: 27 year: 2003 ident: 9593_CR11 publication-title: Mycologia doi: 10.2307/3761959 – volume: 37 start-page: D233 year: 2009 ident: 9593_CR61 publication-title: Nucleic Acids Res doi: 10.1093/nar/gkn663 – ident: 9593_CR63 – volume: 422 start-page: 893 year: 2003 ident: 9593_CR23 publication-title: Nature doi: 10.1038/nature01564 – volume: 10 start-page: 567 year: 2009 ident: 9593_CR43 publication-title: BMC Genomics doi: 10.1186/1471-2164-10-567 – volume: 350 start-page: 716 year: 2006 ident: 9593_CR85 publication-title: Biochem Biophys Res Commun doi: 10.1016/j.bbrc.2006.09.120 – volume: 96 start-page: 190 year: 2006 ident: 9593_CR5 publication-title: Phytopathology doi: 10.1094/PHYTO-96-0190 – ident: 9593_CR77 – volume: 2 start-page: 43 year: 2004 ident: 9593_CR3 publication-title: Nat Rev Microbiol doi: 10.1038/nrmicro797 – volume: 18 start-page: 694 year: 2009 ident: 9593_CR69 publication-title: Protein Sci doi: 10.1002/pro.85 – volume: 274 start-page: 14288 year: 1999 ident: 9593_CR89 publication-title: J Biol Chem doi: 10.1074/jbc.274.20.14288 – volume: 260 start-page: 16174 year: 1985 ident: 9593_CR86 publication-title: J Biol Chem doi: 10.1016/S0021-9258(17)36217-8 – ident: 9593_CR21 – volume: 68 start-page: 1 year: 2004 ident: 9593_CR36 publication-title: Microbiol Mol Biol Rev doi: 10.1128/MMBR.68.1.1-108.2004 – volume: 2 start-page: e1097 year: 2007 ident: 9593_CR38 publication-title: PLoS One doi: 10.1371/journal.pone.0001097 – volume: 17 start-page: 151 year: 2009 ident: 9593_CR44 publication-title: Trends Microbiol doi: 10.1016/j.tim.2009.01.002 – volume: 19 start-page: 838 year: 2006 ident: 9593_CR82 publication-title: Mol Plant Microbe Interact doi: 10.1094/MPMI-19-0838 – volume: 156 start-page: 103 year: 2002 ident: 9593_CR46 publication-title: New Phytol doi: 10.1046/j.1469-8137.2002.00487.x – volume: 8 start-page: 300 year: 2008 ident: 9593_CR56 publication-title: BMC Evol Biol doi: 10.1186/1471-2148-8-300 – volume: 145 start-page: 875 year: 2007 ident: 9593_CR83 publication-title: Plant Physiol doi: 10.1104/pp.107.103689 – volume: 27 start-page: 573 year: 1999 ident: 9593_CR20 publication-title: Nucleic Acids Res doi: 10.1093/nar/27.2.573 – ident: 9593_CR60 – volume: 17 start-page: 847 year: 2001 ident: 9593_CR50 publication-title: Bioinformatics doi: 10.1093/bioinformatics/17.9.847 – volume: 5 start-page: R7 year: 2004 ident: 9593_CR52 publication-title: Genome Biol doi: 10.1186/gb-2004-5-2-r7 – volume: 81 start-page: 814 year: 1984 ident: 9593_CR18 publication-title: Proc Natl Acad Sci USA doi: 10.1073/pnas.81.3.814 – volume: 92 start-page: 374 year: 2000 ident: 9593_CR66 publication-title: Mycologia doi: 10.2307/3761493 – volume: 434 start-page: 980 year: 2005 ident: 9593_CR28 publication-title: Nature doi: 10.1038/nature03449 – volume: 14 start-page: 717 year: 1997 ident: 9593_CR33 publication-title: Mol Biol Evol doi: 10.1093/oxfordjournals.molbev.a025811 – volume: 253 start-page: 19 year: 2005 ident: 9593_CR84 publication-title: FEMS Microbiol Lett doi: 10.1016/j.femsle.2005.09.014 – volume: 2 start-page: e32 year: 2006 ident: 9593_CR14 publication-title: PLoS Genet doi: 10.1371/journal.pgen.0020032 – volume: 9 start-page: 229 year: 2008 ident: 9593_CR29 publication-title: BMC Genomics doi: 10.1186/1471-2164-9-229 – volume: 15 start-page: 1281 year: 1987 ident: 9593_CR32 publication-title: Nucleic Acids Res doi: 10.1093/nar/15.3.1281 – volume: 11 start-page: 35 year: 2009 ident: 9593_CR41 publication-title: Environ Microbiol doi: 10.1111/j.1462-2920.2008.01736.x – volume: 48 start-page: 21 year: 2010 ident: 9593_CR6 publication-title: Annu Rev Phytopathol doi: 10.1146/annurev-phyto-073009-114450 – volume: 215 start-page: 403 year: 1990 ident: 9593_CR74 publication-title: J Mol Biol doi: 10.1016/S0022-2836(05)80360-2 – volume: 87 start-page: 4 year: 2003 ident: 9593_CR4 publication-title: Plant Disease doi: 10.1094/PDIS.2003.87.1.4 – ident: 9593_CR47 – volume: 35 start-page: 565 year: 2010 ident: 9593_CR40 publication-title: Trends Biochem Sci doi: 10.1016/j.tibs.2010.04.003 – volume: 13 start-page: 2178 year: 2003 ident: 9593_CR59 publication-title: Genome Res doi: 10.1101/gr.1224503 – volume: 22 start-page: 36 year: 2008 ident: 9593_CR25 publication-title: Fungal Biol Rev doi: 10.1016/j.fbr.2008.03.002 – volume: 10 start-page: 94 year: 2010 ident: 9593_CR12 publication-title: BMC Evol Biol doi: 10.1186/1471-2148-10-94 – volume: 4 start-page: e1000046 year: 2008 ident: 9593_CR17 publication-title: PLoS Genet doi: 10.1371/journal.pgen.1000046 – volume: 64 start-page: 260 year: 2007 ident: 9593_CR70 publication-title: Mol Microbiol doi: 10.1111/j.1365-2958.2007.05671.x – ident: 9593_CR58 – volume: 9 start-page: 85 year: 1999 ident: 9593_CR79 publication-title: Curr Biol doi: 10.1016/S0960-9822(99)80019-0 – volume: 26 start-page: 553 year: 2008 ident: 9593_CR8 publication-title: Nat Biotechnol doi: 10.1038/nbt1403 – volume: 438 start-page: 1105 year: 2005 ident: 9593_CR15 publication-title: Nature doi: 10.1038/nature04341 – volume: 7 start-page: 249 year: 2006 ident: 9593_CR81 publication-title: Mol Plant Pathol doi: 10.1111/j.1364-3703.2006.00335.x – volume: 407 start-page: 1018 year: 2000 ident: 9593_CR31 publication-title: Nature doi: 10.1038/35039531 – ident: 9593_CR54 – volume: 46 start-page: S72 issue: Suppl 1 year: 2009 ident: 9593_CR65 publication-title: Fungal Genet Biol doi: 10.1016/j.fgb.2008.07.022 – volume: 47 start-page: 55 year: 2006 ident: 9593_CR9 publication-title: Mycoscience doi: 10.1007/S10267-006-0279-7 – ident: 9593_CR75 – volume: 30 start-page: 1575 year: 2002 ident: 9593_CR24 publication-title: Nucleic Acids Res doi: 10.1093/nar/30.7.1575 – volume: 97 start-page: 14433 year: 2000 ident: 9593_CR16 publication-title: Proc Natl Acad Sci USA doi: 10.1073/pnas.240462997 |
| SSID | ssj0019426 ssj0017866 |
| Score | 2.5491548 |
| Snippet | Mycoparasitism, a lifestyle where one fungus is parasitic on another fungus, has special relevance when the prey is a plant pathogen, providing a strategy for... BACKGROUND: Mycoparasitism, a lifestyle where one fungus is parasitic on another fungus, has special relevance when the prey is a plant pathogen, providing a... Background: Mycoparasitism, a lifestyle where one fungus is parasitic on another fungus, has special relevance when the prey is a plant pathogen, providing a... |
| SourceID | wageningen pubmedcentral osti hal proquest pubmed crossref fao |
| SourceType | Open Access Repository Aggregation Database Index Database Enrichment Source Publisher |
| StartPage | R40 |
| SubjectTerms | aspergillus-nidulans Biochemistry, Molecular Biology biological control biological control agents cell-wall Chromosome Mapping DNA Transposable Elements DNA Transposable Elements - genetics dna-sequences eukaryotic genomes fungi genes Genome, Fungal Genome, Fungal - genetics Genomics germplasm conservation hydrophobin gene Hypocrea Hypocrea - classification Hypocrea - genetics hypocrea-jecorina induced systemic resistance Life Sciences Microbiology and Parasitology Mycology mycoparasites neurospora-crassa nucleotide sequences pathogenic fungi pest control Pest Control, Biological Phylogeny plant pathogens plant pests plant protection plant-root colonization Plants Plants - parasitology point mutation Quantitative Methods sequence analysis Sequence Analysis, DNA Sequence Analysis, DNA - methods Species Specificity teleomorphs Trichoderma Trichoderma - classification Trichoderma - genetics Trichoderma atroviride Trichoderma reesei Trichoderma virens |
| Title | Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma |
| URI | https://www.ncbi.nlm.nih.gov/pubmed/21501500 https://www.proquest.com/docview/2000202944 https://www.proquest.com/docview/900627923 https://hal.sorbonne-universite.fr/hal-02879334 https://www.osti.gov/biblio/1154000 https://pubmed.ncbi.nlm.nih.gov/PMC3218866 http://www.narcis.nl/publication/RecordID/oai:library.wur.nl:wurpubs%2F407184 |
| Volume | 12 |
| hasFullText | 1 |
| inHoldings | 1 |
| isFullTextHit | |
| isPrint | |
| link | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV3db9MwELfYENJeEF-DMJgM4gVVZvlwEvexjLEKxoRgkyZeLDtx2qIuQf1g2v567uwkS8eYgBe3cuLEyf1yPp99vyPkVVwYGHd4yooojBiY1BkTWZSxPDJBZjg0CjBQ-NNhMjzmH07ik0tXto0uWeg32cW1cSX_I1WoA7lilOw_SLa9KFTAf5AvlCBhKP9Kxrsd6m4kWz01vWZrdE81bCNLG76CbJXz3ul5VmEL3KiFyTHm1u5EwVuPR286KZBx9tztODwCHTnGXGm17q5t2H17J5fE8rx5rpax12qMzyC5j0sNSqgNBBpMC-QmhQNDM5uZmWJ7GKfich65nF8YeYi27FczyacMSl0tWm_1u4kZVb0BHHbMB-ai67BADyxnKzqWJzFDfmQ3BHXrXDxpq5jDDgD59freLj-NNLM3CkLG2czRP11h0UbWIdD-a-R2CPMJTHXx5e23drkpFUkdhuZ61qxni2Tn6rVX7Je1QlVQjnEP7XoFb_i6ecrv2203zmCsKG3wXMeYObpH7tazEDpwkLpPbpnyAblTi_Qh-d4BFnXAog2waAMs2gEWXQUWVXMKwKItsCgCi1pg0aqgHWA9Isfv9452h6xOysEyEQULpoRfKN0XKddKaJHrMIVP3fh5kmndL2KwiYTKEx3GIs_SovCV8TUMojrRJsp1HG2S9bIqzRNCC-GHWvsqDfKCC5Mo3-T9HE12ozG-2iM7zauWWc1Yj4lTptLOXEUiR1qicGQQSi5BOB553bb44dhabjh3E6Qn1Qg-DXl4EGIUORj7ceqRlyDQtj3yrw8HBxLrwBiH8SziP6FvWyhvCXYqki1nuCstW8gaZh550cBAgrrGNThVmmo5x6yvMEEL-5x7hP7hnD4GNiOvp0ceO-S0nQEDHV2UcIN0BVMrvV09Uk7GljU-AmMeYO6R6BJ9ssSEZXPbqvYay7PlTJZT_IHrzCU6fAR_euPjbpGNyw_9GVlfzJbmOdjqC71tfVxQ7p8E2_ab-wUpc_O1 |
| linkProvider | BioMedCentral |
| openUrl | ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=Comparative+genome+sequence+analysis+underscores+mycoparasitism+as+the+ancestral+life+style+of+Trichoderma&rft.jtitle=GenomeBiology.com&rft.au=Christian+P%2CKubicek&rft.au=Alfredo%2CHerrera-Estrella&rft.au=Verena%2CSeidl-Seiboth&rft.au=Diego+A%2CMartinez&rft.date=2011-04-18&rft.issn=1465-6906&rft.eissn=1465-6914&rft.volume=12&rft.issue=4&rft_id=info:doi/10.1186%2Fgb-2011-12-4-r40&rft.externalDocID=1154000 |
| thumbnail_l | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=1474-760X&client=summon |
| thumbnail_m | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=1474-760X&client=summon |
| thumbnail_s | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=1474-760X&client=summon |