A link among DNA replication, recombination, and gene expression revealed by genetic and genomic analysis of TEBICHI gene of Arabidopsis thaliana

Spatio-temporal regulation of gene expression during development depends on many factors. Mutations in Arabidopsis thaliana TEBICHI (TEB) gene encoding putative helicase and DNA polymerase domains-containing protein result in defects in meristem maintenance and correct organ formation, as well as co...

Full description

Saved in:
Bibliographic Details
Published inPLoS genetics Vol. 5; no. 8; p. e1000613
Main Authors Inagaki, Soichi, Nakamura, Kenzo, Morikami, Atsushi
Format Journal Article
LanguageEnglish
Published United States Public Library of Science 01.08.2009
Public Library of Science (PLoS)
Subjects
Analysis
Arabidopsis - genetics
Arabidopsis - growth & development
Arabidopsis - metabolism
Arabidopsis Proteins - genetics
Arabidopsis Proteins - metabolism
Arabidopsis thaliana
Defects
Deoxyribonucleic acid
DNA
DNA damage
DNA methylation
DNA Replication
DNA-Directed DNA Polymerase - genetics
DNA-Directed DNA Polymerase - metabolism
Epigenetics
Experiments
Gene expression
Gene Expression Regulation, Developmental
Gene Expression Regulation, Plant
Genetic aspects
Genetics
Genetics and Genomics/Gene Expression
Genetics and Genomics/Plant Genetics and Gene Expression
Genomes
Genomics
Molecular Biology/DNA
Molecular Biology/DNA Repair
Molecular Biology/Recombination
Mutation
Plant Biology/Plant Growth and Development
Polymerase chain reaction
Ratios
Recombination, Genetic
RNA polymerase
Studies
Online AccessGet full text

Cover

Abstract Spatio-temporal regulation of gene expression during development depends on many factors. Mutations in Arabidopsis thaliana TEBICHI (TEB) gene encoding putative helicase and DNA polymerase domains-containing protein result in defects in meristem maintenance and correct organ formation, as well as constitutive DNA damage response and a defect in cell cycle progression; but the molecular link between these phenotypes of teb mutants is unknown. Here, we show that mutations in the DNA replication checkpoint pathway gene, ATR, but not in ATM gene, enhance developmental phenotypes of teb mutants, although atr suppresses cell cycle defect of teb mutants. Developmental phenotypes of teb mutants are also enhanced by mutations in RAD51D and XRCC2 gene, which are involved in homologous recombination. teb and teb atr double mutants exhibit defects in adaxial-abaxial polarity of leaves, which is caused in part by the upregulation of ETTIN (ETT)/AUXIN RESPONSIVE FACTOR 3 (ARF3) and ARF4 genes. The Helitron transposon in the upstream of ETT/ARF3 gene is likely to be involved in the upregulation of ETT/ARF3 in teb. Microarray analysis indicated that teb and teb atr causes preferential upregulation of genes nearby the Helitron transposons. Furthermore, interestingly, duplicated genes, especially tandemly arrayed homologous genes, are highly upregulated in teb or teb atr. We conclude that TEB is required for normal progression of DNA replication and for correct expression of genes during development. Interplay between these two functions and possible mechanism leading to altered expression of specific genes will be discussed.
AbstractList   Spatio-temporal regulation of gene expression during development depends on many factors. Mutations in Arabidopsis thaliana TEBICHI (TEB) gene encoding putative helicase and DNA polymerase domains-containing protein result in defects in meristem maintenance and correct organ formation, as well as constitutive DNA damage response and a defect in cell cycle progression; but the molecular link between these phenotypes of teb mutants is unknown. Here, we show that mutations in the DNA replication checkpoint pathway gene, ATR, but not in ATM gene, enhance developmental phenotypes of teb mutants, although atr suppresses cell cycle defect of teb mutants. Developmental phenotypes of teb mutants are also enhanced by mutations in RAD51D and XRCC2 gene, which are involved in homologous recombination. teb and teb atr double mutants exhibit defects in adaxial-abaxial polarity of leaves, which is caused in part by the upregulation of ETTIN (ETT)/AUXIN RESPONSIVE FACTOR 3 (ARF3) and ARF4 genes. The Helitron transposon in the upstream of ETT/ARF3 gene is likely to be involved in the upregulation of ETT/ARF3 in teb. Microarray analysis indicated that teb and teb atr causes preferential upregulation of genes nearby the Helitron transposons. Furthermore, interestingly, duplicated genes, especially tandemly arrayed homologous genes, are highly upregulated in teb or teb atr. We conclude that TEB is required for normal progression of DNA replication and for correct expression of genes during development. Interplay between these two functions and possible mechanism leading to altered expression of specific genes will be discussed.
Spatio-temporal regulation of gene expression during development depends on many factors. Mutations in Arabidopsis thaliana TEBICHI (TEB) gene encoding putative helicase and DNA polymerase domains-containing protein result in defects in meristem maintenance and correct organ formation, as well as constitutive DNA damage response and a defect in cell cycle progression; but the molecular link between these phenotypes of teb mutants is unknown. Here, we show that mutations in the DNA replication checkpoint pathway gene, ATR, but not in ATM gene, enhance developmental phenotypes of teb mutants, although atr suppresses cell cycle defect of teb mutants. Developmental phenotypes of teb mutants are also enhanced by mutations in RAD51D and XRCC2 gene, which are involved in homologous recombination. teb and teb atr double mutants exhibit defects in adaxial-abaxial polarity of leaves, which is caused in part by the upregulation of ETTIN (ETT)/AUXIN RESPONSIVE FACTOR 3 (ARF3) and ARF4 genes. The Helitron transposon in the upstream of ETT/ARF3 gene is likely to be involved in the upregulation of ETT/ARF3 in teb. Microarray analysis indicated that teb and teb atr causes preferential upregulation of genes nearby the Helitron transposons. Furthermore, interestingly, duplicated genes, especially tandemly arrayed homologous genes, are highly upregulated in teb or teb atr. We conclude that TEB is required for normal progression of DNA replication and for correct expression of genes during development. Interplay between these two functions and possible mechanism leading to altered expression of specific genes will be discussed.
Spatio-temporal regulation of gene expression during development depends on many factors. Mutations in Arabidopsis thaliana TEBICHI (TEB) gene encoding putative helicase and DNA polymerase domains-containing protein result in defects in meristem maintenance and correct organ formation, as well as constitutive DNA damage response and a defect in cell cycle progression; but the molecular link between these phenotypes of teb mutants is unknown. Here, we show that mutations in the DNA replication checkpoint pathway gene, ATR, but not in ATM gene, enhance developmental phenotypes of teb mutants, although atr suppresses cell cycle defect of teb mutants. Developmental phenotypes of teb mutants are also enhanced by mutations in RAD51D and XRCC2 gene, which are involved in homologous recombination. teb and teb atr double mutants exhibit defects in adaxial-abaxial polarity of leaves, which is caused in part by the upregulation of ETTIN (ETT)/AUXIN RESPONSIVE FACTOR 3 (ARF3) and ARF4 genes. The Helitron transposon in the upstream of ETT/ARF3 gene is likely to be involved in the upregulation of ETT/ARF3 in teb. Microarray analysis indicated that teb and teb atr causes preferential upregulation of genes nearby the Helitron transposons. Furthermore, interestingly, duplicated genes, especially tandemly arrayed homologous genes, are highly upregulated in teb or teb atr. We conclude that TEB is required for normal progression of DNA replication and for correct expression of genes during development. Interplay between these two functions and possible mechanism leading to altered expression of specific genes will be discussed. doi:10.1371/journal.pgen.1000613
Spatio-temporal regulation of gene expression during development depends on many factors. Mutations in Arabidopsis thaliana TEBICHI (TEB) gene encoding putative helicase and DNA polymerase domains-containing protein result in defects in meristem maintenance and correct organ formation, as well as constitutive DNA damage response and a defect in cell cycle progression; but the molecular link between these phenotypes of teb mutants is unknown. Here, we show that mutations in the DNA replication checkpoint pathway gene, ATR, but not in ATM gene, enhance developmental phenotypes of teb mutants, although atr suppresses cell cycle defect of teb mutants. Developmental phenotypes of teb mutants are also enhanced by mutations in RAD51D and XRCC2 gene, which are involved in homologous recombination. teb and teb atr double mutants exhibit defects in adaxial-abaxial polarity of leaves, which is caused in part by the upregulation of ETTIN (ETT)/AUXIN RESPONSIVE FACTOR 3 (ARF3) and ARF4 genes. The Helitron transposon in the upstream of ETT/ARF3 gene is likely to be involved in the upregulation of ETT/ARF3 in teb. Microarray analysis indicated that teb and teb atr causes preferential upregulation of genes nearby the Helitron transposons. Furthermore, interestingly, duplicated genes, especially tandemly arrayed homologous genes, are highly upregulated in teb or teb atr. We conclude that TEB is required for normal progression of DNA replication and for correct expression of genes during development. Interplay between these two functions and possible mechanism leading to altered expression of specific genes will be discussed. Author Summary DNA replication, repair, and recombination are interrelated processes. Chromatin structure, into which DNA is packaged, is important for regulation of DNA replication, repair, and recombination, as well as gene transcription. After DNA replication and repair, chromatin status including its structure and modification has to be reproduced, and defects in these processes can alter gene expression program because of change in chromatin regulation. Our series of genetic analysis of tebichi (teb) mutant of model plant Arabidopsis thaliana suggest that TEB gene is involved in DNA replication and recombination. We also show here that TEB gene is required for correct expression of many genes including genes regulating development. From these results we propose that TEB gene function is important for maintenance of gene expression pattern after DNA replication and recombination. Furthermore, preferential upregulation of genes near highly duplicated transposons and tandemly arrayed homologous genes are observed in teb mutants, suggesting the interrelationship between homologous recombination and gene transcription around the repetitive sequences.
Spatio-temporal regulation of gene expression during development depends on many factors. Mutations in Arabidopsis thaliana TEBICHI ( TEB ) gene encoding putative helicase and DNA polymerase domains-containing protein result in defects in meristem maintenance and correct organ formation, as well as constitutive DNA damage response and a defect in cell cycle progression; but the molecular link between these phenotypes of teb mutants is unknown. Here, we show that mutations in the DNA replication checkpoint pathway gene, ATR , but not in ATM gene, enhance developmental phenotypes of teb mutants, although atr suppresses cell cycle defect of teb mutants. Developmental phenotypes of teb mutants are also enhanced by mutations in RAD51D and XRCC2 gene, which are involved in homologous recombination. teb and teb atr double mutants exhibit defects in adaxial-abaxial polarity of leaves, which is caused in part by the upregulation of ETTIN ( ETT )/ AUXIN RESPONSIVE FACTOR 3 ( ARF3 ) and ARF4 genes. The Helitron transposon in the upstream of ETT / ARF3 gene is likely to be involved in the upregulation of ETT / ARF3 in teb . Microarray analysis indicated that teb and teb atr causes preferential upregulation of genes nearby the Helitron transposons. Furthermore, interestingly, duplicated genes, especially tandemly arrayed homologous genes, are highly upregulated in teb or teb atr . We conclude that TEB is required for normal progression of DNA replication and for correct expression of genes during development. Interplay between these two functions and possible mechanism leading to altered expression of specific genes will be discussed. DNA replication, repair, and recombination are interrelated processes. Chromatin structure, into which DNA is packaged, is important for regulation of DNA replication, repair, and recombination, as well as gene transcription. After DNA replication and repair, chromatin status including its structure and modification has to be reproduced, and defects in these processes can alter gene expression program because of change in chromatin regulation. Our series of genetic analysis of tebichi ( teb ) mutant of model plant Arabidopsis thaliana suggest that TEB gene is involved in DNA replication and recombination. We also show here that TEB gene is required for correct expression of many genes including genes regulating development. From these results we propose that TEB gene function is important for maintenance of gene expression pattern after DNA replication and recombination. Furthermore, preferential upregulation of genes near highly duplicated transposons and tandemly arrayed homologous genes are observed in teb mutants, suggesting the interrelationship between homologous recombination and gene transcription around the repetitive sequences.
Audience Academic
Author Nakamura, Kenzo
Inagaki, Soichi
Morikami, Atsushi
AuthorAffiliation Iowa State University, United States of America
1 Laboratory of Biochemistry, Graduate School of Bio-agricultural Sciences, Nagoya University, Chikusa, Nagoya, Japan
2 Faculty of Agriculture, Meijo University, Tenpaku, Nagoya, Japan
AuthorAffiliation_xml – name: 2 Faculty of Agriculture, Meijo University, Tenpaku, Nagoya, Japan
– name: 1 Laboratory of Biochemistry, Graduate School of Bio-agricultural Sciences, Nagoya University, Chikusa, Nagoya, Japan
– name: Iowa State University, United States of America
Author_xml – sequence: 1
  givenname: Soichi
  surname: Inagaki
  fullname: Inagaki, Soichi
  email: soinagak@lab.nig.ac.jp
  organization: Laboratory of Biochemistry, Graduate School of Bio-agricultural Sciences, Nagoya University, Chikusa, Nagoya, Japan. soinagak@lab.nig.ac.jp
– sequence: 2
  givenname: Kenzo
  surname: Nakamura
  fullname: Nakamura, Kenzo
– sequence: 3
  givenname: Atsushi
  surname: Morikami
  fullname: Morikami, Atsushi
BackLink https://www.ncbi.nlm.nih.gov/pubmed/19696887$$D View this record in MEDLINE/PubMed
BookMark eNqVk92KEzEUxwdZcT_0DUQHhBXB1mSSTCY3Qq2rW1h2QVdvQybJtFnTpE6my_YxfGNP21ltQUSZi8k5-Z3_IefjODsIMdgse4rREBOO39zEZRuUHy6mNgwxQqjE5EF2hBkjA04RPdg5H2bHKd0gRFgl-KPsEItSlFXFj7Ifo9y78C1X8xim-fvLUd7ahXdadS6G12DoOK9d6E0VTA7pbG7vFq1NCZyA3Frlrcnr1eauc_qei_PNWflVcimPTX599m4yPp9sNcAetap2Ji7W191MeQfw4-xho3yyT_r_Sfblw9n1-HxwcfVxMh5dDDQXtBsUWBiNqaGKNLogRV1wrREnjJSGVYiVrLJ1hQ3BQijMMGWGMM2byhhaCsTISfZ8q7vwMcm-mkliggkrEKcciMmWMFHdyEXr5qpdyaic3DhiO5Wqhed6K4WtCMWINlBs2thSMC0EEUVTU1MJVoPW2z7bsp5bo23oWuX3RPdvgpvJabyVBS8wxRQEXvYCbfy-tKmTc5e09V4FG5dJckIEL4qSAHn6V7LAqORVUQH4YgtOoX_ShSZCZr2G5QgqUFIKlQJq-AcKPmOhvTCTjQP_XsCrvQBgOnvXTdUyJTn5_Ok_2Mt_Z6--7rOnO-wMBrSbpeiX6zFO-yDdgrqNKbW2-dUSjOR6z-4nQ673TPZ7BmHPdtv5O6hfLPITYucjCQ
CitedBy_id crossref_primary_10_1021_bm301436x
crossref_primary_10_1111_nph_15680
crossref_primary_10_3389_fpls_2020_00839
crossref_primary_10_1111_tpj_15295
crossref_primary_10_1016_j_dnarep_2012_10_004
crossref_primary_10_3389_fpls_2019_01055
crossref_primary_10_5511_plantbiotechnology_18_0129b
crossref_primary_10_1038_ncomms5285
crossref_primary_10_1093_nar_gkac469
crossref_primary_10_1111_tpj_15356
crossref_primary_10_1111_tpj_16863
crossref_primary_10_1111_j_1365_3040_2010_02257_x
crossref_primary_10_1111_tpj_15557
crossref_primary_10_1111_tpj_16604
crossref_primary_10_1146_annurev_genet_072920_041046
crossref_primary_10_1242_bio_2012406
crossref_primary_10_1111_nph_17184
crossref_primary_10_1242_dev_085365
crossref_primary_10_5511_plantbiotechnology_13_0513a
crossref_primary_10_1111_pce_13365
crossref_primary_10_1111_j_1365_313X_2011_04718_x
crossref_primary_10_1128_microbiolspec_MDNA3_0049_2014
crossref_primary_10_1002_wdev_196
crossref_primary_10_1093_pcp_pcq178
crossref_primary_10_1016_j_tig_2024_02_002
crossref_primary_10_1111_jipb_12640
crossref_primary_10_1016_j_pbi_2010_12_001
crossref_primary_10_1111_tpj_12182
crossref_primary_10_1007_s00018_015_2078_9
crossref_primary_10_1016_j_dnarep_2011_04_002
crossref_primary_10_1186_s13100_019_0165_4
crossref_primary_10_1371_journal_pone_0161204
crossref_primary_10_1093_pcp_pct027
crossref_primary_10_1073_pnas_1005978107
crossref_primary_10_3390_genes10121028
crossref_primary_10_3390_genes13020322
crossref_primary_10_1111_tpj_12215
crossref_primary_10_1111_tpj_13602
crossref_primary_10_1186_s12864_015_1318_6
crossref_primary_10_1111_tpj_12455
crossref_primary_10_1016_j_bbagrm_2011_08_003
crossref_primary_10_3390_ijms20194814
crossref_primary_10_1002_pmic_201000445
Cites_doi 10.1016/j.cell.2005.04.004
10.1073/pnas.0609357104
10.1104/pp.106.094979
10.1105/tpc.006577
10.1242/dev.121.7.2143
10.1016/j.dnarep.2006.05.027
10.1126/science.1086391
10.1093/genetics/125.4.813
10.1146/annurev.biochem.73.011303.073723
10.1534/genetics.104.032896
10.1038/nature04148
10.1093/emboj/cdg352
10.1073/pnas.0505636102
10.1093/pcp/pci155
10.1038/nrg1970
10.1016/j.dnarep.2007.02.024
10.1111/j.1365-313X.2006.02931.x
10.1083/jcb.200510015
10.1105/tpc.005959
10.1101/gad.1231804
10.1016/j.cub.2005.09.044
10.1038/sj.emboj.7601434
10.1016/j.cell.2006.08.003
10.1016/j.molcel.2004.09.028
10.1105/tpc.015214
10.1016/j.dnarep.2007.02.015
10.1111/j.1365-2443.2006.00922.x
10.1242/dev.116.2.397
10.1016/j.cell.2007.02.005
10.1073/pnas.0501458102
10.1016/S0092-8674(00)80164-6
10.1242/dev.121.5.1519
10.1038/nature05918
10.1073/pnas.0504029102
10.1016/j.cell.2007.01.015
10.1046/j.1365-313x.1999.00620.x
10.1242/dev.000497
10.1101/gad.295404
10.1105/tpc.107.051821
10.1111/j.1365-313X.2004.02270.x
10.1105/tpc.105.034876
10.1371/journal.pcbi.0020115
10.1073/pnas.151269298
10.1105/tpc.105.037044
10.1038/nature05980
10.1093/molbev/msm197
10.1111/j.1365-313X.2004.02074.x
10.1105/tpc.105.033449
10.1105/tpc.106.045088
10.1105/tpc.105.036798
10.1105/tpc.018903
10.1016/j.sbi.2004.01.001
10.1073/pnas.0502923102
10.1016/j.cub.2006.03.064
10.1016/S0092-8674(01)00197-0
10.1093/pcp/pcj057
10.1093/pcp/pci082
10.1105/tpc.105.037507
10.1111/j.1365-313X.2004.02318.x
10.1371/journal.pgen.0030086
10.1038/ng1615
10.1093/molbev/msi241
10.1016/0092-8674(89)90398-X
10.1093/genetics/163.3.1031
10.1016/j.cell.2007.01.030
10.1038/nature05915
10.1093/jxb/erh069
10.1016/j.cub.2005.09.013
10.1093/genetics/123.2.261
10.1016/j.tig.2004.01.007
10.1105/tpc.105.039677
10.1038/nrm805
10.1074/jbc.M513426200
10.1105/tpc.106.042325
ContentType Journal Article
Copyright COPYRIGHT 2009 Public Library of Science
Inagaki et al. 2009
2009 Inagaki et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Inagaki S, Nakamura K, Morikami A (2009) A Link among DNA Replication, Recombination, and Gene Expression Revealed by Genetic and Genomic Analysis of TEBICHI Gene of Arabidopsis thaliana. PLoS Genet 5(8): e1000613. doi:10.1371/journal.pgen.1000613
Copyright_xml – notice: COPYRIGHT 2009 Public Library of Science
– notice: Inagaki et al. 2009
– notice: 2009 Inagaki et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Inagaki S, Nakamura K, Morikami A (2009) A Link among DNA Replication, Recombination, and Gene Expression Revealed by Genetic and Genomic Analysis of TEBICHI Gene of Arabidopsis thaliana. PLoS Genet 5(8): e1000613. doi:10.1371/journal.pgen.1000613
DBID CGR
CUY
CVF
ECM
EIF
NPM
AAYXX
CITATION
IOV
ISN
ISR
7TM
8FD
FR3
P64
RC3
7X8
5PM
DOA
DOI 10.1371/journal.pgen.1000613
DatabaseName Medline
MEDLINE
MEDLINE (Ovid)
MEDLINE
MEDLINE
PubMed
CrossRef
Gale In Context: Opposing Viewpoints database
Gale In Context: Canada
Science in Context
Nucleic Acids Abstracts
Technology Research Database
Engineering Research Database
Biotechnology and BioEngineering Abstracts
Genetics Abstracts
MEDLINE - Academic
PubMed Central (Full Participant titles)
DOAJ Directory of Open Access Journals
DatabaseTitle MEDLINE
Medline Complete
MEDLINE with Full Text
PubMed
MEDLINE (Ovid)
CrossRef
Genetics Abstracts
Engineering Research Database
Technology Research Database
Nucleic Acids Abstracts
Biotechnology and BioEngineering Abstracts
MEDLINE - Academic
DatabaseTitleList

MEDLINE



Genetics Abstracts
Database_xml – sequence: 1
  dbid: DOA
  name: DOAJ Directory of Open Access Journals
  url: https://www.doaj.org/
  sourceTypes: Open Website
– sequence: 2
  dbid: NPM
  name: PubMed
  url: https://proxy.k.utb.cz/login?url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed
  sourceTypes: Index Database
– sequence: 3
  dbid: EIF
  name: MEDLINE
  url: https://proxy.k.utb.cz/login?url=https://www.webofscience.com/wos/medline/basic-search
  sourceTypes: Index Database
DeliveryMethod fulltext_linktorsrc
Discipline Biology
DocumentTitleAlternate Genome Maintenance and Gene Expression
EISSN 1553-7404
Editor Schnable, Patrick S.
Editor_xml – sequence: 1
  givenname: Patrick S.
  surname: Schnable
  fullname: Schnable, Patrick S.
EndPage e1000613
ExternalDocumentID 1313520747
oai_doaj_org_article_9e834104f4044fe695c99392fb4d895b
A207644469
10_1371_journal_pgen_1000613
19696887
Genre Research Support, Non-U.S. Gov't
Journal Article
GroupedDBID ---
123
29O
2WC
3V.
53G
5VS
7X7
88E
8FE
8FH
8FI
8FJ
AAFWJ
ABDBF
ABUWG
ACGFO
ACIHN
ACIWK
ACPRK
ADBBV
ADRAZ
AEAQA
AENEX
AFKRA
AFPKN
AHMBA
ALIPV
ALMA_UNASSIGNED_HOLDINGS
AOIJS
B0M
BAWUL
BBNVY
BCNDV
BENPR
BHPHI
BPHCQ
BVXVI
BWKFM
C1A
CCPQU
CGR
CS3
CUY
CVF
DIK
DU5
E3Z
EAP
EAS
EBD
EBS
ECM
EIF
EJD
EMK
EMOBN
ESX
F5P
FPL
FYUFA
GROUPED_DOAJ
GX1
H13
HCIFZ
HMCUK
HYE
IAO
IGS
IHR
IHW
INH
INR
IOV
IPNFZ
ISN
ISR
ITC
KQ8
LK8
M1P
M48
M7P
M~E
NPM
O5R
O5S
OK1
P2P
PIMPY
PQQKQ
PROAC
PSQYO
PV9
QF4
QN7
RIG
RNS
RPM
RZL
SV3
TR2
TUS
UKHRP
WOQ
WOW
XSB
~8M
AAYXX
CITATION
7TM
8FD
FR3
P64
RC3
7X8
5PM
AAPBV
ABPTK
ID FETCH-LOGICAL-c794t-219dc14d4a3fc232b27cc073536d5805658eb81d3199a15145d35c7f8dd469053
IEDL.DBID RPM
ISSN 1553-7404
1553-7390
IngestDate Sun Oct 01 00:20:37 EDT 2023
Tue Oct 22 15:01:06 EDT 2024
Tue Sep 17 21:26:02 EDT 2024
Fri Jun 28 09:58:06 EDT 2024
Fri Jun 28 15:51:21 EDT 2024
Tue Nov 19 21:31:44 EST 2024
Tue Nov 12 23:45:51 EST 2024
Sat Sep 28 20:55:53 EDT 2024
Sat Sep 28 21:06:08 EDT 2024
Sat Sep 28 21:27:13 EDT 2024
Tue Aug 20 22:15:54 EDT 2024
Fri Aug 23 03:51:46 EDT 2024
Sat Sep 28 07:57:07 EDT 2024
IsDoiOpenAccess true
IsOpenAccess true
IsPeerReviewed true
IsScholarly true
Issue 8
Language English
License This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
Creative Commons Attribution License
LinkModel DirectLink
MergedId FETCHMERGED-LOGICAL-c794t-219dc14d4a3fc232b27cc073536d5805658eb81d3199a15145d35c7f8dd469053
Notes ObjectType-Article-2
SourceType-Scholarly Journals-1
ObjectType-Feature-1
content type line 23
ObjectType-Article-1
ObjectType-Feature-2
Current address: Department of Integrated Genetics, National Institute of Genetics, Mishima, Shizuoka, Japan
Conceived and designed the experiments: SI KN AM. Performed the experiments: SI. Analyzed the data: SI. Contributed reagents/materials/analysis tools: SI KN AM. Wrote the paper: SI KN AM.
OpenAccessLink https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2721414/
PMID 19696887
PQID 21067828
PQPubID 23462
ParticipantIDs plos_journals_1313520747
doaj_primary_oai_doaj_org_article_9e834104f4044fe695c99392fb4d895b
pubmedcentral_primary_oai_pubmedcentral_nih_gov_2721414
proquest_miscellaneous_733972263
proquest_miscellaneous_21067828
gale_infotracmisc_A207644469
gale_infotracacademiconefile_A207644469
gale_incontextgauss_ISR_A207644469
gale_incontextgauss_ISN_A207644469
gale_incontextgauss_IOV_A207644469
gale_healthsolutions_A207644469
crossref_primary_10_1371_journal_pgen_1000613
pubmed_primary_19696887
PublicationCentury 2000
PublicationDate 2009-08-01
PublicationDateYYYYMMDD 2009-08-01
PublicationDate_xml – month: 08
  year: 2009
  text: 2009-08-01
  day: 01
PublicationDecade 2000
PublicationPlace United States
PublicationPlace_xml – name: United States
– name: San Francisco, USA
PublicationTitle PLoS genetics
PublicationTitleAlternate PLoS Genet
PublicationYear 2009
Publisher Public Library of Science
Public Library of Science (PLoS)
Publisher_xml – name: Public Library of Science
– name: Public Library of Science (PLoS)
References 11988766 - Nat Rev Mol Cell Biol. 2002 May;3(5):317-27
12509526 - Plant Cell. 2003 Jan;15(1):119-32
16949657 - Cell. 2006 Sep 22;126(6):1189-201
16172387 - Proc Natl Acad Sci U S A. 2005 Sep 27;102(39):13986-91
17110925 - EMBO J. 2006 Nov 29;25(23):5579-90
17522676 - Nature. 2007 May 24;447(7143):425-32
14555697 - Plant Cell. 2003 Nov;15(11):2592-602
15611187 - Genetics. 2004 Dec;168(4):2207-15
16399800 - Plant Cell. 2006 Feb;18(2):350-65
16699177 - Plant Cell Physiol. 2006 Jul;47(7):853-63
17412649 - DNA Repair (Amst). 2007 Jul 1;6(7):1042-61
12663541 - Genetics. 2003 Mar;163(3):1031-40
15082530 - Genes Dev. 2004 Apr 1;18(7):782-93
15686518 - Plant J. 2005 Feb;41(4):533-45
17320507 - Cell. 2007 Feb 23;128(4):693-705
12893945 - Science. 2003 Aug 1;301(5633):653-7
16056225 - Nat Genet. 2005 Sep;37(9):997-1002
17531546 - DNA Repair (Amst). 2007 Jul 1;6(7):953-66
10607302 - Plant J. 1999 Nov;20(4):503-8
15102447 - Curr Opin Struct Biol. 2004 Feb;14(1):36-42
17581578 - Nature. 2007 Jun 21;447(7147):951-8
16948529 - PLoS Comput Biol. 2006 Sep 1;2(9):e115
11447285 - Proc Natl Acad Sci U S A. 2001 Jul 17;98(15):8714-9
15125773 - Plant J. 2004 May;38(4):673-84
15980147 - Proc Natl Acad Sci U S A. 2005 Jul 5;102(27):9703-8
16006579 - Plant Cell. 2005 Aug;17(8):2157-71
15466488 - Genes Dev. 2004 Oct 1;18(19):2368-79
15746155 - Plant Cell Physiol. 2005 May;46(5):736-42
16682355 - Curr Biol. 2006 May 9;16(9):933-8
16292314 - Nature. 2005 Nov 17;438(7066):379-83
15851028 - Cell. 2005 Apr 22;121(2):207-21
2397884 - Genetics. 1990 Aug;125(4):813-9
17360504 - Proc Natl Acad Sci U S A. 2007 Mar 6;104(10):4223-7
16980538 - Plant Cell. 2006 Oct;18(10):2431-42
16271868 - Curr Biol. 2005 Nov 8;15(21):1919-25
15075397 - Plant Cell. 2004 May;16(5):1091-104
11163246 - Cell. 2001 Jan 12;104(1):131-42
7789281 - Development. 1995 May;121(5):1519-32
16120808 - Mol Biol Evol. 2005 Dec;22(12):2444-56
16766691 - Plant Cell. 2006 Jul;18(7):1750-65
8808624 - Cell. 1996 Sep 20;86(6):887-96
17251271 - Development. 2007 Mar;134(5):813-23
15951422 - Proc Natl Acad Sci U S A. 2005 Jun 21;102(25):9068-73
16271867 - Curr Biol. 2005 Nov 8;15(21):1912-8
17890239 - Mol Biol Evol. 2007 Nov;24(11):2515-24
15584964 - Plant J. 2004 Dec;40(6):1007-15
17227549 - Plant J. 2006 Dec;48(6):947-61
15469823 - Mol Cell. 2004 Oct 8;16(1):69-79
2546672 - Cell. 1989 Jul 14;58(1):15-25
16199616 - Plant Cell. 2005 Nov;17(11):2899-910
17890374 - Plant Cell. 2007 Sep;19(9):2929-39
14966212 - J Exp Bot. 2004 Mar;55(397):673-84
15189136 - Annu Rev Biochem. 2004;73:39-85
17320508 - Cell. 2007 Feb 23;128(4):707-19
16517762 - Plant Cell. 2006 Apr;18(4):879-92
17173059 - Nat Rev Genet. 2007 Jan;8(1):77-84
16520385 - J Cell Biol. 2006 Mar 13;172(6):823-34
12368497 - Plant Cell. 2002 Oct;14(10):2451-62
2684745 - Genetics. 1989 Oct;123(2):261-8
17522673 - Nature. 2007 May 24;447(7143):407-12
16798113 - DNA Repair (Amst). 2006 Sep 8;5(9-10):1010-20
15049302 - Trends Genet. 2004 Mar;20(3):116-22
17320509 - Cell. 2007 Feb 23;128(4):721-33
17293570 - Plant Cell. 2007 Feb;19(2):445-57
16326925 - Plant Cell. 2006 Jan;18(1):85-103
15939881 - Proc Natl Acad Sci U S A. 2005 Jun 14;102(24):8650-5
16436048 - Genes Cells. 2006 Feb;11(2):111-21
17351056 - Plant Physiol. 2007 May;144(1):105-20
15964904 - Plant Cell Physiol. 2005 Sep;46(9):1452-61
16452472 - J Biol Chem. 2006 Apr 7;281(14):9560-8
12853488 - EMBO J. 2003 Jul 15;22(14):3737-48
17542647 - PLoS Genet. 2007 Jun;3(6):e86
T Suzuki (ref30) 2005; 46
A Groth (ref6) 2007; 128
P Bundock (ref22) 2002; 14
R Waites (ref41) 1995; 121
A Colón-Carmona (ref36) 1999; 20
L Xu (ref46) 2006; 47
X Zhang (ref66) 2006; 126
JB Boyd (ref32) 1990; 125
H Kaya (ref11) 2001; 104
M Lichten (ref62) 1989; 123
H Li (ref45) 2005; 17
PA Mieczkowski (ref59) 2006; 5
S Takeda (ref19) 2004; 18
VV Kapitonov (ref51) 2001; 98
S Guyomarc'h (ref27) 2004; 55
H Yi (ref65) 2007; 19
S Smith (ref12) 1989; 58
E Allen (ref47) 2005; 121
JY Bleuyard (ref55) 2005; 41
T Tsukuda (ref8) 2005; 438
PH Gaillard (ref13) 1996; 86
M Morgante (ref69) 2005; 37
W Reik (ref4) 2007; 447
RD Paulsen (ref56) 2007; 6
BS Gaut (ref58) 2007; 8
D Garcia (ref44) 2006; 16
SL Berger (ref2) 2007; 447
A Peragine (ref48) 2004; 18
JD Hollister (ref61) 2007; 24
JA Downs (ref5) 2007; 447
C Rizzon (ref52) 2006; 2
HMO Leyser (ref14) 1992; 116
T Suzuki (ref29) 2005; 46
WE Durrant (ref53) 2007; 104
K Masuda (ref35) 2005; 102
V Garcia (ref39) 2003; 15
T Elmayan (ref23) 2005; 15
M Mondragon-Palomino (ref60) 2005; 22
JM Alonso (ref73) 2003; 301
S Lambert (ref57) 2007; 6
RA Mosher (ref54) 2006; 18
E Ramirez-Parra (ref16) 2007; 144
K Culligan (ref40) 2004; 16
S Inagaki (ref31) 2006; 18
A Kapoor (ref24) 2005; 15
I Pekker (ref50) 2005; 17
L Li (ref63) 2004; 40
D Fisher (ref9) 2003; 22
A Ukai (ref33) 2006; 11
K Watanabe (ref42) 2003; 15
N Shima (ref34) 2003; 163
DH Chitwood (ref43) 2007; 134
F Turck (ref67) 2007; 3
M Endo (ref15) 2006; 25
T Kouzarides (ref3) 2007; 128
RA Sessions (ref72) 1995; 121
T Suzuki (ref28) 2004; 38
R Opperman (ref64) 2004; 168
R Xia (ref26) 2006; 18
N Schönrock (ref17) 2006; 281
B Li (ref1) 2007; 128
D D'Amours (ref20) 2002; 3
C Wang (ref25) 2006; 18
A Sancar (ref37) 2004; 73
D Leister (ref68) 2004; 20
F Vazquez (ref71) 2004; 16
Y Yu (ref10) 2005; 102
J Lai (ref70) 2005; 102
Y Ueno (ref74) 2007; 19
KM Culligan (ref38) 2006; 48
MJ Kruhlak (ref7) 2006; 172
A Kirik (ref18) 2006; 18
A Bochkarev (ref21) 2004; 14
L Williams (ref49) 2005; 102
References_xml – volume: 121
  start-page: 207
  year: 2005
  ident: ref47
  article-title: microRNA-directed phasing during trans-acting siRNA biogenesis in plants.
  publication-title: Cell
  doi: 10.1016/j.cell.2005.04.004
  contributor:
    fullname: E Allen
– volume: 104
  start-page: 4223
  year: 2007
  ident: ref53
  article-title: Arabidopsis SNI1 and RAD51D regulate both gene transcription and DNA recombination during the defense response.
  publication-title: Proc Natl Acad Sci USA
  doi: 10.1073/pnas.0609357104
  contributor:
    fullname: WE Durrant
– volume: 144
  start-page: 105
  year: 2007
  ident: ref16
  article-title: E2F regulates FASCIATA1, a chromatin assembly gene whose loss switches on the endocycle and activates gene expression by changing the epigenetic status.
  publication-title: Plant Physiol
  doi: 10.1104/pp.106.094979
  contributor:
    fullname: E Ramirez-Parra
– volume: 15
  start-page: 119
  year: 2003
  ident: ref39
  article-title: AtATM is essential for meiosis and the somatic response to DNA damage in plants.
  publication-title: Plant Cell
  doi: 10.1105/tpc.006577
  contributor:
    fullname: V Garcia
– volume: 121
  start-page: 2143
  year: 1995
  ident: ref41
  article-title: phantastica: a gene required for dorsoventrality of leaves Antirrhinum majus.
  publication-title: Development
  doi: 10.1242/dev.121.7.2143
  contributor:
    fullname: R Waites
– volume: 5
  start-page: 1010
  year: 2006
  ident: ref59
  article-title: Recombination between retrotransposons as a source of chromosome rearrangements in the yeast Saccharomyces cerevisiae.
  publication-title: DNA Repair (Amst.)
  doi: 10.1016/j.dnarep.2006.05.027
  contributor:
    fullname: PA Mieczkowski
– volume: 301
  start-page: 653
  year: 2003
  ident: ref73
  article-title: Genome-wide insertional mutagenesis of Arabidopsis thaliana.
  publication-title: Science
  doi: 10.1126/science.1086391
  contributor:
    fullname: JM Alonso
– volume: 125
  start-page: 813
  year: 1990
  ident: ref32
  article-title: mus308 mutants of Drosophila exhibit hypersensitivity to DNA cross-linking agents and are defective in a deoxyribonuclease.
  publication-title: Genetics
  doi: 10.1093/genetics/125.4.813
  contributor:
    fullname: JB Boyd
– volume: 73
  start-page: 39
  year: 2004
  ident: ref37
  article-title: Molecular mechanisms of mammalian DNA repair and the DNA damage checkpoints.
  publication-title: Annu Rev Biochem
  doi: 10.1146/annurev.biochem.73.011303.073723
  contributor:
    fullname: A Sancar
– volume: 168
  start-page: 2207
  year: 2004
  ident: ref64
  article-title: The effect of sequence divergence on recombination between direct repeats in Arabidopsis.
  publication-title: Genetics
  doi: 10.1534/genetics.104.032896
  contributor:
    fullname: R Opperman
– volume: 438
  start-page: 379
  year: 2005
  ident: ref8
  article-title: Chromatin remodelling at a DNA double-strand break site in Saccharomyces cerevisiae.
  publication-title: Nature
  doi: 10.1038/nature04148
  contributor:
    fullname: T Tsukuda
– volume: 22
  start-page: 3737
  year: 2003
  ident: ref9
  article-title: Vertebrate HoxB gene expression requires DNA replication.
  publication-title: EMBO J
  doi: 10.1093/emboj/cdg352
  contributor:
    fullname: D Fisher
– volume: 102
  start-page: 13986
  year: 2005
  ident: ref35
  article-title: DNA polymerase θ contributes to the generation of C/G mutations during somatic hypermutation of Ig genes.
  publication-title: Proc Natl Acad Sci USA
  doi: 10.1073/pnas.0505636102
  contributor:
    fullname: K Masuda
– volume: 46
  start-page: 1452
  year: 2005
  ident: ref30
  article-title: An Arabidopsis protein with a novel calcium-binding repeat sequence interacts with TONSOKU/MGOUN3/BRUSHY1 involved in meristem maintenance.
  publication-title: Plant Cell Physiol
  doi: 10.1093/pcp/pci155
  contributor:
    fullname: T Suzuki
– volume: 8
  start-page: 77
  year: 2007
  ident: ref58
  article-title: Recombination: an underappreciated factor in the evolution of plant genomes.
  publication-title: Nat Rev Genet
  doi: 10.1038/nrg1970
  contributor:
    fullname: BS Gaut
– volume: 6
  start-page: 1042
  year: 2007
  ident: ref57
  article-title: Arrested replication fork processing: Interplay between checkpoints and recombination.
  publication-title: DNA Repair (Amst.)
  doi: 10.1016/j.dnarep.2007.02.024
  contributor:
    fullname: S Lambert
– volume: 48
  start-page: 947
  year: 2006
  ident: ref38
  article-title: ATR and ATM play both distinct and additive roles in response to ionizing radiation.
  publication-title: Plant J
  doi: 10.1111/j.1365-313X.2006.02931.x
  contributor:
    fullname: KM Culligan
– volume: 172
  start-page: 823
  year: 2006
  ident: ref7
  article-title: Changes in chromatin structure and mobility in living cells at sites of DNA double-strand breaks.
  publication-title: J Cell Biol
  doi: 10.1083/jcb.200510015
  contributor:
    fullname: MJ Kruhlak
– volume: 14
  start-page: 2451
  year: 2002
  ident: ref22
  article-title: Severe developmental defects, hypersensitivity to DNA-damaging agents, and lengthened telomeres in Arabidopsis MRE11 mutants.
  publication-title: Plant Cell
  doi: 10.1105/tpc.005959
  contributor:
    fullname: P Bundock
– volume: 18
  start-page: 2368
  year: 2004
  ident: ref48
  article-title: SGS3 and SGS2/SDE1/RDR6 are required for juvenile development and the production of trans-acting siRNAs in Arabidopsis.
  publication-title: Genes Dev
  doi: 10.1101/gad.1231804
  contributor:
    fullname: A Peragine
– volume: 15
  start-page: 1919
  year: 2005
  ident: ref23
  article-title: Arabidopsis RPA2: A genetic link among transcriptional gene silencing, DNA repair, and DNA replication.
  publication-title: Curr Biol
  doi: 10.1016/j.cub.2005.09.044
  contributor:
    fullname: T Elmayan
– volume: 25
  start-page: 5579
  year: 2006
  ident: ref15
  article-title: Increased frequency of homologous recombination and T-DNA integration in Arabidopsis CAF-1 mutants.
  publication-title: EMBO J
  doi: 10.1038/sj.emboj.7601434
  contributor:
    fullname: M Endo
– volume: 126
  start-page: 1189
  year: 2006
  ident: ref66
  article-title: Genome-wide high-resolution mapping and functional analysis of DNA methylation in Arabidopsis.
  publication-title: Cell
  doi: 10.1016/j.cell.2006.08.003
  contributor:
    fullname: X Zhang
– volume: 16
  start-page: 69
  year: 2004
  ident: ref71
  article-title: Endogenous trans-acting siRNAs regulate the accumulation of Arabidopsis mRNAs.
  publication-title: Mol Cell
  doi: 10.1016/j.molcel.2004.09.028
  contributor:
    fullname: F Vazquez
– volume: 15
  start-page: 2592
  year: 2003
  ident: ref42
  article-title: Two discrete cis elements control the abaxial side-specific expression of the FILAMENTOUS FLOWER gene in Arabidopsis.
  publication-title: Plant Cell
  doi: 10.1105/tpc.015214
  contributor:
    fullname: K Watanabe
– volume: 6
  start-page: 953
  year: 2007
  ident: ref56
  article-title: The ATR pathway: Fine-tuning the fork.
  publication-title: DNA Repair (Amst.)
  doi: 10.1016/j.dnarep.2007.02.015
  contributor:
    fullname: RD Paulsen
– volume: 11
  start-page: 111
  year: 2006
  ident: ref33
  article-title: Role of DNA polymerase θ in tolerance of endogenous and exogenous DNA damage in mouse B cells.
  publication-title: Genes Cells
  doi: 10.1111/j.1365-2443.2006.00922.x
  contributor:
    fullname: A Ukai
– volume: 116
  start-page: 397
  year: 1992
  ident: ref14
  article-title: Characterisation of three shoot apical meristem mutants of Arabidopsis thaliana.
  publication-title: Development
  doi: 10.1242/dev.116.2.397
  contributor:
    fullname: HMO Leyser
– volume: 128
  start-page: 693
  year: 2007
  ident: ref3
  article-title: Chromatin modifications and their function.
  publication-title: Cell
  doi: 10.1016/j.cell.2007.02.005
  contributor:
    fullname: T Kouzarides
– volume: 102
  start-page: 8650
  year: 2005
  ident: ref10
  article-title: UV irradiation stimulates histone acetylation and chromatin remodeling at a repressed yeast locus.
  publication-title: Proc Natl Acad Sci USA
  doi: 10.1073/pnas.0501458102
  contributor:
    fullname: Y Yu
– volume: 86
  start-page: 887
  year: 1996
  ident: ref13
  article-title: Chromatin assembly coupled to DNA repair: a new role for chromatin assembly factor I.
  publication-title: Cell
  doi: 10.1016/S0092-8674(00)80164-6
  contributor:
    fullname: PH Gaillard
– volume: 121
  start-page: 1519
  year: 1995
  ident: ref72
  article-title: Arabidopsis gynoecium structure in the wild and in ettin mutants.
  publication-title: Development
  doi: 10.1242/dev.121.5.1519
  contributor:
    fullname: RA Sessions
– volume: 447
  start-page: 425
  year: 2007
  ident: ref4
  article-title: Stability and flexibility of epigenetic gene regulation in mammalian development.
  publication-title: Nature
  doi: 10.1038/nature05918
  contributor:
    fullname: W Reik
– volume: 102
  start-page: 9703
  year: 2005
  ident: ref49
  article-title: A database analysis method identifies an endogenous trans-acting short-interfering RNA that targets the Arabidopsis ARF2, ARF3, and ARF4 genes.
  publication-title: Proc Natl Acad Sci USA
  doi: 10.1073/pnas.0504029102
  contributor:
    fullname: L Williams
– volume: 128
  start-page: 707
  year: 2007
  ident: ref1
  article-title: The role of chromatin during transcription.
  publication-title: Cell
  doi: 10.1016/j.cell.2007.01.015
  contributor:
    fullname: B Li
– volume: 20
  start-page: 503
  year: 1999
  ident: ref36
  article-title: Technical advance: Spatio-temporal analysis of mitotic activity with a labile cyclin-GUS fusion protein.
  publication-title: Plant J
  doi: 10.1046/j.1365-313x.1999.00620.x
  contributor:
    fullname: A Colón-Carmona
– volume: 134
  start-page: 813
  year: 2007
  ident: ref43
  article-title: Establishing leaf polarity: the role of small RNAs and positional signals in the shoot apex.
  publication-title: Development
  doi: 10.1242/dev.000497
  contributor:
    fullname: DH Chitwood
– volume: 18
  start-page: 782
  year: 2004
  ident: ref19
  article-title: BRU1, a novel link between responses to DNA damage and epigenetic gene silencing in Arabidopsis.
  publication-title: Genes Dev
  doi: 10.1101/gad.295404
  contributor:
    fullname: S Takeda
– volume: 19
  start-page: 2929
  year: 2007
  ident: ref65
  article-title: A cluster of disease resistance genes in Arabidopsis is coordinately regulated by transcriptional activation and RNA silencing.
  publication-title: Plant Cell
  doi: 10.1105/tpc.107.051821
  contributor:
    fullname: H Yi
– volume: 40
  start-page: 1007
  year: 2004
  ident: ref63
  article-title: A novel reporter for intrachromosomal homoeologous recombination in Arabidopsis thaliana.
  publication-title: Plant J
  doi: 10.1111/j.1365-313X.2004.02270.x
  contributor:
    fullname: L Li
– volume: 17
  start-page: 2899
  year: 2005
  ident: ref50
  article-title: Auxin response factoors mediate Arabidopsis organ asymmetry via modulation of KANADI activity.
  publication-title: Plant Cell
  doi: 10.1105/tpc.105.034876
  contributor:
    fullname: I Pekker
– volume: 2
  start-page: 989
  year: 2006
  ident: ref52
  article-title: Striking similarities in the genomic distribution of tandemly arrayed genes in Arabidopsis and rice.
  publication-title: PLoS Comput Biol
  doi: 10.1371/journal.pcbi.0020115
  contributor:
    fullname: C Rizzon
– volume: 98
  start-page: 8714
  year: 2001
  ident: ref51
  article-title: Rolling-circle transposons in eukaryotes.
  publication-title: Proc Natl Acad Sci USA
  doi: 10.1073/pnas.151269298
  contributor:
    fullname: VV Kapitonov
– volume: 18
  start-page: 350
  year: 2006
  ident: ref25
  article-title: Arabidopsis ribonucleotide reductases are critical for cell cycle progression, DNA damage repair, and plant development.
  publication-title: Plant Cell
  doi: 10.1105/tpc.105.037044
  contributor:
    fullname: C Wang
– volume: 447
  start-page: 951
  year: 2007
  ident: ref5
  article-title: Chromatin dynamics and the preservation of genetic information.
  publication-title: Nature
  doi: 10.1038/nature05980
  contributor:
    fullname: JA Downs
– volume: 24
  start-page: 2515
  year: 2007
  ident: ref61
  article-title: Population and evolutionary dynamics of Helitron transposable elements in Arabidopsis thaliana.
  publication-title: Mol Biol Evol
  doi: 10.1093/molbev/msm197
  contributor:
    fullname: JD Hollister
– volume: 38
  start-page: 673
  year: 2004
  ident: ref28
  article-title: A novel Arabidopsis gene TONSOKU is required for proper cell arrangement in root and shoot apical meristems.
  publication-title: Plant J
  doi: 10.1111/j.1365-313X.2004.02074.x
  contributor:
    fullname: T Suzuki
– volume: 17
  start-page: 2157
  year: 2005
  ident: ref45
  article-title: The putative RNA-dependent RNA polymerase RDR6 acts synergistically with ASYMMETRIC LEAVES1 and 2 to repress BREVIPEDICELLUS and microRNA165/166 in Arabidopsis leaf development.
  publication-title: Plant Cell
  doi: 10.1105/tpc.105.033449
  contributor:
    fullname: H Li
– volume: 18
  start-page: 2431
  year: 2006
  ident: ref18
  article-title: The chromatin assembly factor subunit FASCIATA1 is involved in homologous recombination in plants.
  publication-title: Plant Cell
  doi: 10.1105/tpc.106.045088
  contributor:
    fullname: A Kirik
– volume: 18
  start-page: 879
  year: 2006
  ident: ref31
  article-title: Arabidopsis TEBICHI, with helicase and DNA polymerase domains, is required for regulated cell division and differentiation in meristems.
  publication-title: Plant Cell
  doi: 10.1105/tpc.105.036798
  contributor:
    fullname: S Inagaki
– volume: 16
  start-page: 1091
  year: 2004
  ident: ref40
  article-title: ATR regulates a G2-phase cell-cycle checkpoint in Arabidopsis thaliana.
  publication-title: Plant Cell
  doi: 10.1105/tpc.018903
  contributor:
    fullname: K Culligan
– volume: 14
  start-page: 36
  year: 2004
  ident: ref21
  article-title: From RPA to BRCA2: lessons from single-stranded DNA binding by the OB-fold.
  publication-title: Curr Opin Struct Biol
  doi: 10.1016/j.sbi.2004.01.001
  contributor:
    fullname: A Bochkarev
– volume: 102
  start-page: 9068
  year: 2005
  ident: ref70
  article-title: Gene movement by Helitron transposons contributes to the haplotype variability of maize.
  publication-title: Proc Natl Acad Sci USA
  doi: 10.1073/pnas.0502923102
  contributor:
    fullname: J Lai
– volume: 16
  start-page: 933
  year: 2006
  ident: ref44
  article-title: Specification of leaf polarity in Arabidopsis via the trans-acting siRNA pathway.
  publication-title: Curr Biol
  doi: 10.1016/j.cub.2006.03.064
  contributor:
    fullname: D Garcia
– volume: 104
  start-page: 131
  year: 2001
  ident: ref11
  article-title: FASCIATA genes for chromatin assembly factor-1 in Arabidopsis maintain the cellular organization of apical meristems.
  publication-title: Cell
  doi: 10.1016/S0092-8674(01)00197-0
  contributor:
    fullname: H Kaya
– volume: 47
  start-page: 853
  year: 2006
  ident: ref46
  article-title: Genetic interaction between the AS1-AS2 and RDR6-SGS3-AGO7 pathways for leaf morphogenesis.
  publication-title: Plant Cell Physiol
  doi: 10.1093/pcp/pcj057
  contributor:
    fullname: L Xu
– volume: 46
  start-page: 736
  year: 2005
  ident: ref29
  article-title: TONSOKU is expressed in S phase of the cell cycle and its defect delays cell cycle progression in Arabidopsis.
  publication-title: Plant Cell Physiol
  doi: 10.1093/pcp/pci082
  contributor:
    fullname: T Suzuki
– volume: 18
  start-page: 85
  year: 2006
  ident: ref26
  article-title: ROR1/RPA2A, a putative replication protein A2, functions in epigenetic gene silencing and in regulation of meristem development in Arabidopsis.
  publication-title: Plant Cell
  doi: 10.1105/tpc.105.037507
  contributor:
    fullname: R Xia
– volume: 41
  start-page: 533
  year: 2005
  ident: ref55
  article-title: Differing requirements for the Arabidopsis Rad51 paralogs in meiosis and DNA repair.
  publication-title: Plant J
  doi: 10.1111/j.1365-313X.2004.02318.x
  contributor:
    fullname: JY Bleuyard
– volume: 3
  start-page: 855
  year: 2007
  ident: ref67
  article-title: Arabidopsis TFL2/LHP1 specifically associates with genes marked by trimethylation of histone H3 lysine 27.
  publication-title: PLoS Genet
  doi: 10.1371/journal.pgen.0030086
  contributor:
    fullname: F Turck
– volume: 37
  start-page: 997
  year: 2005
  ident: ref69
  article-title: Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize.
  publication-title: Nat Genet
  doi: 10.1038/ng1615
  contributor:
    fullname: M Morgante
– volume: 22
  start-page: 2444
  year: 2005
  ident: ref60
  article-title: Gene conversion and the evolution of three leucine-rich repeat gene families in Arabidopsis thaliana.
  publication-title: Mol Biol Evol
  doi: 10.1093/molbev/msi241
  contributor:
    fullname: M Mondragon-Palomino
– volume: 58
  start-page: 15
  year: 1989
  ident: ref12
  article-title: Purification and characterization of CAF-I, a human cell factor required for chromatin assembly during DNA replication in vitro.
  publication-title: Cell
  doi: 10.1016/0092-8674(89)90398-X
  contributor:
    fullname: S Smith
– volume: 163
  start-page: 1031
  year: 2003
  ident: ref34
  article-title: Phenotype-based identification of mouse chromosome instability mutants.
  publication-title: Genetics
  doi: 10.1093/genetics/163.3.1031
  contributor:
    fullname: N Shima
– volume: 128
  start-page: 721
  year: 2007
  ident: ref6
  article-title: Chromatin challenges during DNA replication and repair.
  publication-title: Cell
  doi: 10.1016/j.cell.2007.01.030
  contributor:
    fullname: A Groth
– volume: 447
  start-page: 407
  year: 2007
  ident: ref2
  article-title: The complex language of chromatin regulation during transcription.
  publication-title: Nature
  doi: 10.1038/nature05915
  contributor:
    fullname: SL Berger
– volume: 55
  start-page: 673
  year: 2004
  ident: ref27
  article-title: MGOUN3, an Arabidopsis gene with TetratricoPeptide-Repeat-related motifs, regulates meristem cellular organization.
  publication-title: J Exp Bot
  doi: 10.1093/jxb/erh069
  contributor:
    fullname: S Guyomarc'h
– volume: 15
  start-page: 1912
  year: 2005
  ident: ref24
  article-title: Mutations in a conserved replication protein suppress transcriptional gene silencing in a DNA-methylation-independent manner in Arabidopsis.
  publication-title: Curr Biol
  doi: 10.1016/j.cub.2005.09.013
  contributor:
    fullname: A Kapoor
– volume: 123
  start-page: 261
  year: 1989
  ident: ref62
  article-title: Position effects in ectopic and allelic mitotic recombination in Saccharomyces cerevisiae.
  publication-title: Genetics
  doi: 10.1093/genetics/123.2.261
  contributor:
    fullname: M Lichten
– volume: 20
  start-page: 116
  year: 2004
  ident: ref68
  article-title: Tandem and segmental gene duplication and recombination in the evolution of plant disease resistance gene.
  publication-title: Trends Genet
  doi: 10.1016/j.tig.2004.01.007
  contributor:
    fullname: D Leister
– volume: 18
  start-page: 1750
  year: 2006
  ident: ref54
  article-title: A comprehensive structure-function analysis of Arabidopsis SNI1 defines essential regions and transcriptional repressor activity.
  publication-title: Plant Cell
  doi: 10.1105/tpc.105.039677
  contributor:
    fullname: RA Mosher
– volume: 3
  start-page: 317
  year: 2002
  ident: ref20
  article-title: The MRE11 complex: at the crossroads of DNA repair and checkpoint signalling.
  publication-title: Nat Rev Mol Cell Biol
  doi: 10.1038/nrm805
  contributor:
    fullname: D D'Amours
– volume: 281
  start-page: 9560
  year: 2006
  ident: ref17
  article-title: Functional genomic analysis of CAF-1 mutants in Arabidopsis thaliana.
  publication-title: J Biol Chem
  doi: 10.1074/jbc.M513426200
  contributor:
    fullname: N Schönrock
– volume: 19
  start-page: 445
  year: 2007
  ident: ref74
  article-title: Histone deacetylases and ASYMMETRIC LEAVES2 are involved in the establishment of polarity in leaves of Arabidopsis.
  publication-title: Plant Cell
  doi: 10.1105/tpc.106.042325
  contributor:
    fullname: Y Ueno
SSID ssj0035897
Score 2.2053552
Snippet Spatio-temporal regulation of gene expression during development depends on many factors. Mutations in Arabidopsis thaliana TEBICHI (TEB) gene encoding...
Spatio-temporal regulation of gene expression during development depends on many factors. Mutations in Arabidopsis thaliana TEBICHI ( TEB ) gene encoding...
  Spatio-temporal regulation of gene expression during development depends on many factors. Mutations in Arabidopsis thaliana TEBICHI (TEB) gene encoding...
SourceID plos
doaj
pubmedcentral
proquest
gale
crossref
pubmed
SourceType Open Website
Open Access Repository
Aggregation Database
Index Database
StartPage e1000613
SubjectTerms Analysis
Arabidopsis - genetics
Arabidopsis - growth & development
Arabidopsis - metabolism
Arabidopsis Proteins - genetics
Arabidopsis Proteins - metabolism
Arabidopsis thaliana
Defects
Deoxyribonucleic acid
DNA
DNA damage
DNA methylation
DNA Replication
DNA-Directed DNA Polymerase - genetics
DNA-Directed DNA Polymerase - metabolism
Epigenetics
Experiments
Gene expression
Gene Expression Regulation, Developmental
Gene Expression Regulation, Plant
Genetic aspects
Genetics
Genetics and Genomics/Gene Expression
Genetics and Genomics/Plant Genetics and Gene Expression
Genomes
Genomics
Molecular Biology/DNA
Molecular Biology/DNA Repair
Molecular Biology/Recombination
Mutation
Plant Biology/Plant Growth and Development
Polymerase chain reaction
Ratios
Recombination, Genetic
RNA polymerase
Studies
SummonAdditionalLinks – databaseName: DOAJ Directory of Open Access Journals
  dbid: DOA
  link: http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwrV3db9MwELdQJSReEN8LDLAQEi-ENYmdOI_Z2NQiUSTY0N4sf4VNgqRqWon9GfzH3NlJaRCIPfDW1Nck9p3Pv6vPvyPkJaBUmzBnYiESFTOj81jBShhbppVLhNDCn-J_v8hnZ-zdOT_fKfWFOWGBHjgM3EHpBDjaKavZlLHa5SU3sKSWaa2ZFSXX3vtO0yGYCj444yKUVeE8iwsI6_tDc1mRHPQ6erMEBWGOQChtsLMoee7-rYeeLL-23Z_g5-9ZlDvL0skdcrvHk7QK_bhLbrjmHrkZKkxe3Sc_KopbtNTXFKJvFxVdue2O9WuK4fA3iI37S9VYCu_rqPve58c2FCme4BUt1Ve-DZ4zyOGBZvgcWE1oW9PT48P50Wwe7gHX1UrpS9susXl94f9RUQ_I2cnx6dEs7qswxAbm6joGl2ZNwixTWW0Af-m0MAYcA89yywXgJy6cBtQLc7lUgB8Ytxk3RS2sxdCbZw_JpGkbt0domaaF4nld1xrUqbUuIT52JjPMIc19GpF4UINcBrIN6XfcCghSwnhKVJvs1RaRQ9TVVhapsv0XYECyNyD5LwOKyHPUtAznTrcTXlbptACwCH2IyAsvgXQZDebjfFGbrpPzD5-vIfRpcR2hjyOhV71Q3YJhGdUflIAxRK6ukeT-SBI8gxk176HxDkPXwUAmgLexZAJ0ejBoib_CTLvGtZtOpsgpCGF4ROhfJIoMMCygdhj-R2EG_FKW51oScPtiNDdGGhq3NJcXntQ8LdKEJezx_1DpE3IrbPphnuY-maxXG_cUsONaP_Nu4ieKVWkV
  priority: 102
  providerName: Directory of Open Access Journals
– databaseName: Scholars Portal Open Access Journals
  dbid: M48
  link: http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwjV3db9MwELdGERIvE98rDLAQEi9kahI7cR4QysamFmlFghXtzfJXtkkjKU0rrX8G_zF3TlII2tDemvrixHe-u9_F9h0hbwGl2pA5EwgRqoAZnQQKPGFgmVYuFEILf4r_eJqMZ-zzKT_dIl3N1paB9bWhHdaTmi0u965-rj-Cwn_wVRvSsLtpbw4sx1V_dFF3yN0IfCNu8jpmm3WFmIum3ArncZBCuN8eprupl56z8jn9N5Z7ML-s6utg6b-7K_9yV0cPyHaLM2neTIyHZMuVj8i9pvLk-jH5lVNcuqW-1hD9NM3pwm1Wst9TDJN_QMzcXqrSUnhfR91Vu2-2pJj6CV7RUr32bfCcjg4POsPvJtsJrQp6crg_ORhPmj7gOl8ofWGrOTYvz_2XFvWEzI4OTw7GQVudITCgw8sATJ01IbNMxYUBXKaj1BgwGDxOLBeAq7hwGtAw6HimAFcwbmNu0kJYiyE5j5-SQVmVbofQLIpSxZOiKHTBRlrrDOJmZ2LDHKa_j4Yk6MQg500SDulX4lIIXhp-ShSbbMU2JPsoqw0tptD2f1SLM9lqpMycAA8-YvBExgqXZNwAVsuiQjMrMq6H5DVKWjbnUTeGQObRKAUQCWMYkjeeAtNolLhP50yt6lpOvny_BdG36W2IvvaI3rVERQUTy6j2AAXwEHN49Sh3e5RgMUyveQcnb8e6GhgZAg7HUgow6G5CS7wLd-CVrlrVMsJcgxCeDwm9gSKNAdsCmgf2P2s04I-wfA4mAd2nPd3oSajfUl6c-2TnURqFLGTP_z-kF-R-s8yHOzN3yWC5WLmXgBaX-pU3AL8Bq61m5w
  priority: 102
  providerName: Scholars Portal
Title A link among DNA replication, recombination, and gene expression revealed by genetic and genomic analysis of TEBICHI gene of Arabidopsis thaliana
URI https://www.ncbi.nlm.nih.gov/pubmed/19696887
https://search.proquest.com/docview/21067828
https://search.proquest.com/docview/733972263
https://pubmed.ncbi.nlm.nih.gov/PMC2721414
https://doaj.org/article/9e834104f4044fe695c99392fb4d895b
http://dx.doi.org/10.1371/journal.pgen.1000613
Volume 5
hasFullText 1
inHoldings 1
isFullTextHit
isPrint
link http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV3fb9owELZapkl7qfa72TpmTZP2sgBJbOI8AqOCSbCqayfeothOWqSSIALT-mfsP96d47Bm2qRqL0jBF0J8vrvvkrvPhLwHlKo9lipXCC9xmZJ9N4FI6Gomk9QTQgrTxT-b9yeX7POCLw4Ir3thTNG-kstOfrPq5MtrU1u5XqluXSfWPZuNfEhbmMe6h-QQwm-dolfuN-Ci2lGF88ANIaO3_XJB6HWtejpr0A2WB2AsM6yhyBCDRXV3QpNh8N_76db6pij_BkL_rKW8E5xOH5MjiyrpoPr3T8hBmj8lD6t9Jm-fkZ8DijknNTsL0U_zAQXcXT-t-0gxBV1BhmwPk1xTZKOm4x-2SjYHke-IKDWVt2YMrlPLYVszrblNaJHRi_FwOppMq9-A48EmkUtdrHF4e22eqyTPyeXp-GI0ce1eDK4Ci9264Ni08phmSZApQGHSD5UC98CDvuYCUBQXqQTsCxYdJYAiGNcBV2EmtMYEnAcvSCsv8vSY0Mj3w4T3syyTGetJKSPIklMVKJYi2b3vELdWQ7yuKDdi894thFSlms8YNRhbDTpkiLrayyJhtvmi2FzFdtnEUSogXvcYXJGxLO1HXAEyi_xMMi0iLh3yFjUdV92ne7OPB34vBMgI9-CQd0YCSTNyrMq5SnZlGU-_fLuH0Nf5fYTOG0IfrFBWwMJSiW2XgDlExq6G5ElDEvyDagwf4-Ktp66EifQAdePGCXDT9YKO8Syst8vTYlfGPjILQjLuEPoPiTAAJAvYHab_ZWUBv5Vl7ckhYcM2GhpqjoClG2pza9mv_vvM1-RR9b4PSzRPSGu72aVvADZuZRucxSJskwfD8fzsvG0evsDnjIm2cSC_AIzEbXM
link.rule.ids 230,314,727,780,784,864,885,2102,2221,24318,27924,27925,31720,33745,53791,53793
linkProvider National Library of Medicine
linkToHtml http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV1Lb9NAEF6VIAQXxLuGQlcIiQtOYns3to9pSJVAExCkqLfVPuw2UmNHeSD6M_jHzKzXoUYgVRydHcf2zM7sN_bMt4S8AZRqApZpP0kC6TOter6EldA3TMksSBKV2C7-ybQ3OmUfzvjZHuF1L4wt2tdq3i4uF-1ifmFrK5cL3anrxDqfJ4MQ0hYWsM4tcptHcRrUSXoVgCOeVHuqcB75MeT0rmMuioOOM1B7CdbBAgFczSxvKHLEYFndtcXJcvjvInVreVmu_wZD_6ymvLY8HT8g9x2upP3q_h-Svax4RO5UO01ePSY_-xSzTmr3FqLvp30KyLt-X_eOYhK6gBzZHcrCUOSjpsMfrk62AJHviCkNVVd2DK5Ty2FjM63ZTWiZ09nwaDwYjav_gOP-Sqq5KZc4vLmwb1bkE3J6PJwNRr7bjcHX4LMbH0Kb0QEzTEa5BhymwlhrCBA86hmeAI7iSaYA_YJPpxJwBOMm4jrOE2MwBefRU9IqyiLbJzQNw1jyXp7nKmddpVQKeXKmI80ypLsPPeLXZhDLinRD2C9vMSQrlT4FWlA4C3rkCG21k0XKbPtDuToXbuKINEtgxe4yuCJjedZLuQZsloa5YiZJufLIIVpaVP2nO8cX_bAbA2iEZ_DIayuBtBkF1uWcy-16Lcafvt1A6Ov0JkJfGkJvnVBewsTS0jVMgA6Rs6shedCQhAihG8P7OHlr1a1BkQHgbtw6AR66ntACz8KKuyIrt2sRIrcgpOMeof-QiCPAsoDeQf3PKg_4bSznTx6JG77RsFBzBHzdkps7337-32cekruj2eREnIynH1-Qe9XXPyzYPCCtzWqbvQQQuVGvbMj4BbnMbHg
linkToPdf http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV3db9MwELegCMQL4nuBwSyExAtpmsRukseua9UCKxNsaG9WbCdbpTWJ-oHYn8F_zJ3jlAaBNPGY-tLId77z75Lz7wh5CyhV-yxTbhz7qcuU7Lsp7ISuZjLN_DiWsTnFfzzrT87Yh3N-vtPqyxTtKznvFleLbjG_NLWV1UJ5TZ2Yd3I8DCBtYT7zKp17t8kdHsIiaxL1OgiHPK77qnAeuhHk9fbUXBj5njVStwILYZEA7miGOxR5YrC0bmeDMjz-22jdqa7K1d-g6J8VlTtb1PgheWCxJR3Uc3hEbmXFY3K37jZ5_YT8HFDMPKnpL0SPZgMK6Lt5Z_eeYiK6gDzZXqaFpshJTUc_bK1sASLfEVdqKq_NGDynkcPDzbRhOKFlTk9Hh9PhZFr_B1wPlqmc67LC4fWlebuSPiVn49HpcOLajgyuAr9duxDetPKZZmmYK8BiMoiUgiDBw77mMWApHmcSEDD4dZIClmBch1xFeaw1puE8fEY6RVlke4QmQRClvJ_nucxZT0qZQK6cqVCxDCnvA4e4jRlEVRNvCPP1LYKEpdanQAsKa0GHHKKttrJIm21-KJcXwi4ekWQx7No9Bk9kLM_6CVeAz5Igl0zHCZcOOUBLi_oM6tb5xSDoRQAcYQ4OeWMkkDqjwNqci3SzWonp5283EPo6u4nQl5bQOyuUl7CwVGoPTYAOkberJbnfkoQooVrDe7h4G9WtQJE-YG9snwCTbha0wLuw6q7Iys1KBMgvCCm5Q-g_JKIQ8CwgeFD_89oDfhvL-pNDopZvtCzUHgF_NwTn1r9f_PedB-TeydFYfJrOPr4k9-sPgFizuU866-UmewU4ci1fm4jxC98rbYs
openUrl ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=A+link+among+DNA+replication%2C+recombination%2C+and+gene+expression+revealed+by+genetic+and+genomic+analysis+of+TEBICHI+gene+of+Arabidopsis+thaliana&rft.jtitle=PLoS+genetics&rft.au=Inagaki%2C+Soichi&rft.au=Nakamura%2C+Kenzo&rft.au=Morikami%2C+Atsushi&rft.date=2009-08-01&rft.pub=Public+Library+of+Science&rft.issn=1553-7390&rft.volume=5&rft.issue=8&rft_id=info:doi/10.1371%2Fjournal.pgen.1000613&rft.externalDocID=A207644469
thumbnail_l http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=1553-7404&client=summon
thumbnail_m http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=1553-7404&client=summon
thumbnail_s http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=1553-7404&client=summon