Antisense Transcription in the Mammalian Transcriptome
Antisense transcription (transcription from the opposite strand to a protein-coding or sense strand) has been ascribed roles in gene regulation involving degradation of the corresponding sense transcripts (RNA interference), as well as gene silencing at the chromatin level. Global transcriptome anal...
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| Published in | Science (American Association for the Advancement of Science) Vol. 309; no. 5740; pp. 1564 - 1566 |
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| Main Authors | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
| Format | Journal Article |
| Language | English |
| Published |
Washington, DC
American Association for the Advancement of Science
02.09.2005
The American Association for the Advancement of Science |
| Subjects | |
| Online Access | Get full text |
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| Abstract | Antisense transcription (transcription from the opposite strand to a protein-coding or sense strand) has been ascribed roles in gene regulation involving degradation of the corresponding sense transcripts (RNA interference), as well as gene silencing at the chromatin level. Global transcriptome analysis provides evidence that a large proportion of the genome can produce transcripts from both strands, and that antisense transcripts commonly link neighboring "genes" in complex loci into chains of linked transcriptional units. Expression profiling reveals frequent concordant regulation of sense/antisense pairs. We present experimental evidence that perturbation of an antisense RNA can alter the expression of sense messenger RNAs, suggesting that antisense transcription contributes to control of transcriptional outputs in mammals. |
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| AbstractList | Antisense transcription (transcription from the opposite strand to a protein-coding or sense strand) has been ascribed roles in gene regulation involving degradation of the corresponding sense transcripts (RNA interference), as well as gene silencing at the chromatin level. Global transcriptome analysis provides evidence that a large proportion of the genome can produce transcripts from both strands, and that antisense transcripts commonly link neighboring "genes" in complex loci into chains of linked transcriptional units. Expression profiling reveals frequent concordant regulation of sense/antisense pairs. We present experimental evidence that perturbation of an antisense RNA can alter the expression of sense messenger RNAs, suggesting that antisense transcription contributes to control of transcriptional outputs in mammals. Antisense transcription (transcription from the opposite strand to a protein-coding or sense strand) has been ascribed roles in gene regulation involving degradation of the corresponding sense transcripts (RNA interference), as well as gene silencing at the chromatin level. Global transcriptome analysis provides evidence that a large proportion of the genome can produce transcripts from both strands, and that antisense transcripts commonly link neighboring "genes" in complex loci into chains of linked transcriptional units. Expression profiling reveals frequent concordant regulation of sense/antisense pairs. We present experimental evidence that perturbation of an antisense RNA can alter the expression of sense messenger RNAs, suggesting that antisense transcription contributes to control of transcriptional outputs in mammals. [PUBLICATION ABSTRACT] |
| Audience | Academic |
| Author | Kawai, J Carninci, P Batalov, S Nakamura, M Frith, M Suzuki, M Tomaru, Y Suzuki, H Waki, K Wahlestedt, C Mottagui-Tabar, S Pang, K. C Kasukawa, T Hume, D. A Nishida, H Lipovich, L Liang, Z Yap, C. C Wells, C Chalk, A. M Mattick, J Katayama, S Sandelin, A Hayashizaki, Y Engström, P. G Nakanishi, M Ravasi, T Faghihi, M. A Hallinan, J Mizuno, Y Lenhard, B |
| Author_xml | – sequence: 1 fullname: Katayama, S – sequence: 2 fullname: Tomaru, Y – sequence: 3 fullname: Kasukawa, T – sequence: 4 fullname: Waki, K – sequence: 5 fullname: Nakanishi, M – sequence: 6 fullname: Nakamura, M – sequence: 7 fullname: Nishida, H – sequence: 8 fullname: Yap, C. C – sequence: 9 fullname: Suzuki, M – sequence: 10 fullname: Kawai, J – sequence: 11 fullname: Suzuki, H – sequence: 12 fullname: Carninci, P – sequence: 13 fullname: Hayashizaki, Y – sequence: 14 fullname: Wells, C – sequence: 15 fullname: Frith, M – sequence: 16 fullname: Ravasi, T – sequence: 17 fullname: Pang, K. C – sequence: 18 fullname: Hallinan, J – sequence: 19 fullname: Mattick, J – sequence: 20 fullname: Hume, D. A – sequence: 21 fullname: Lipovich, L – sequence: 22 fullname: Batalov, S – sequence: 23 fullname: Engström, P. G – sequence: 24 fullname: Mizuno, Y – sequence: 25 fullname: Faghihi, M. A – sequence: 26 fullname: Sandelin, A – sequence: 27 fullname: Chalk, A. M – sequence: 28 fullname: Mottagui-Tabar, S – sequence: 29 fullname: Liang, Z – sequence: 30 fullname: Lenhard, B – sequence: 31 fullname: Wahlestedt, C |
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| ContentType | Journal Article |
| Copyright | Copyright 2005 American Association for the Advancement of Science 2006 INIST-CNRS COPYRIGHT 2005 American Association for the Advancement of Science COPYRIGHT 2005 American Association for the Advancement of Science Copyright American Association for the Advancement of Science Sep 2, 2005 |
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| Snippet | Antisense transcription (transcription from the opposite strand to a protein-coding or sense strand) has been ascribed roles in gene regulation involving... |
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| SubjectTerms | Animals Antisense DNA Biological and medical sciences Chromatin Coding Complementary DNA Disproportionate Representation Evidence Fundamental and applied biological sciences. Psychology Gene Expression Regulation Gene loci Genetic loci Genetic transcription Genome Genomes Humans Libraries Mammals Medical research Medicin och hälsovetenskap Messenger RNA Mice - genetics Molecular and cellular biology Molecular genetics Proteins Research facilities Ribonucleic acid RNA RNA Interference RNA, Antisense - biosynthesis RNA, Messenger - biosynthesis Small interfering RNA Transcription (Genetics) Transcription, Genetic Transcription. Transcription factor. Splicing. Rna processing Transcriptomes Transcripts (Written Records) |
| Title | Antisense Transcription in the Mammalian Transcriptome |
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