Respiratory virus behavior: Results of laboratory-based epidemiological surveillance

Respiratory viruses have clinical and epidemiological importance. With the COVID-19 pandemic, interest has focused on SARS-CoV-2, but as a result, the number of samples available for the differential diagnosis of other respiratory viruses has increased. Cross-sectional study. To describe the epidemi...

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Published inPloS one Vol. 19; no. 10; p. e0307322
Main Authors Hernández Bautista, Porfirio Felipe, Cabrera Gaytán, David Alejandro, Vallejos Parás, Alfonso, Moctezuma Paz, Alejandro, Santacruz Tinoco, Clara Esperanza, Alvarado Yaah, Julio Elias, Anguiano Hernández, Yu Mei, Martínez Miguel, Bernardo, Arriaga Nieto, Lumumba, Jaimes Betancourt, Leticia, Sandoval Gutiérrez, Nancy
Format Journal Article
LanguageEnglish
Published United States Public Library of Science 03.10.2024
Public Library of Science (PLoS)
Subjects
Adenoviruses
Adolescent
Adult
Age groups
Aged
Analysis
Biology and life sciences
Bivariate analysis
Child
Child, Preschool
Coinfection - epidemiology
Coinfection - virology
COVID-19
COVID-19 - epidemiology
COVID-19 - virology
Cross-Sectional Studies
Data analysis
Death
Development and progression
Diagnosis
Differential diagnosis
Epidemiological Monitoring
Epidemiology
Female
Health surveillance
Humans
Infant
Infant, Newborn
Influenza
ISO standards
Laboratories
Male
Medicine and Health Sciences
Middle Aged
Multivariate analysis
Pandemics
Parainfluenza
Respiratory diseases
Respiratory syncytial virus
Respiratory Syncytial Virus Infections - diagnosis
Respiratory Syncytial Virus Infections - epidemiology
Respiratory Syncytial Virus Infections - virology
Respiratory tract diseases
Respiratory Tract Infections - epidemiology
Respiratory Tract Infections - virology
Rhinovirus
Rhinovirus - genetics
Rhinovirus - isolation & purification
Risk factors
SARS-CoV-2 - isolation & purification
Severe acute respiratory syndrome coronavirus 2
Surveillance systems
Viral diseases
Virus diseases
Viruses
Young Adult
Mexico
California
United Kingdom > UK
United States > US
Online AccessGet full text
ISSN1932-6203
1932-6203
DOI10.1371/journal.pone.0307322

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Abstract Respiratory viruses have clinical and epidemiological importance. With the COVID-19 pandemic, interest has focused on SARS-CoV-2, but as a result, the number of samples available for the differential diagnosis of other respiratory viruses has increased. Cross-sectional study. To describe the epidemiological behavior of respiratory viruses based on a laboratory-based epidemiological surveillance system using data from 2017 to 2023. Univariate, bivariate and multivariate analyses of data from a laboratory database of respiratory viruses detected by multiplex RT‒qPCR were performed. A total of 4,632 samples with positive results for at least 1 respiratory virus, not including influenza or SARS-CoV-2, were analyzed. The most common virus detected was respiratory syncytial virus in 1,467 (26.3%) samples, followed by rhinovirus in 1,384 (24.8%) samples. Most of the samples were from children under 5 years of age. The age-adjusted odds ratio (OR) of death for patients infected with parainfluenza virus 4 was 4.1 (95% confidence interval [95% CI] 2.0-8.2). Respiratory syncytial virus and rhinovirus had the highest frequency and proportion of coinfections, whereas parainfluenza virus 4 was associated with an increased risk of death.
AbstractList BackgroundRespiratory viruses have clinical and epidemiological importance. With the COVID-19 pandemic, interest has focused on SARS-CoV-2, but as a result, the number of samples available for the differential diagnosis of other respiratory viruses has increased.Study designCross-sectional study.ObjectiveTo describe the epidemiological behavior of respiratory viruses based on a laboratory-based epidemiological surveillance system using data from 2017 to 2023.MethodsUnivariate, bivariate and multivariate analyses of data from a laboratory database of respiratory viruses detected by multiplex RT‒qPCR were performed.ResultsA total of 4,632 samples with positive results for at least 1 respiratory virus, not including influenza or SARS-CoV-2, were analyzed. The most common virus detected was respiratory syncytial virus in 1,467 (26.3%) samples, followed by rhinovirus in 1,384 (24.8%) samples. Most of the samples were from children under 5 years of age. The age-adjusted odds ratio (OR) of death for patients infected with parainfluenza virus 4 was 4.1 (95% confidence interval [95% CI] 2.0-8.2).ConclusionRespiratory syncytial virus and rhinovirus had the highest frequency and proportion of coinfections, whereas parainfluenza virus 4 was associated with an increased risk of death.
Respiratory viruses have clinical and epidemiological importance. With the COVID-19 pandemic, interest has focused on SARS-CoV-2, but as a result, the number of samples available for the differential diagnosis of other respiratory viruses has increased. Cross-sectional study. To describe the epidemiological behavior of respiratory viruses based on a laboratory-based epidemiological surveillance system using data from 2017 to 2023. Univariate, bivariate and multivariate analyses of data from a laboratory database of respiratory viruses detected by multiplex RT‒qPCR were performed. A total of 4,632 samples with positive results for at least 1 respiratory virus, not including influenza or SARS-CoV-2, were analyzed. The most common virus detected was respiratory syncytial virus in 1,467 (26.3%) samples, followed by rhinovirus in 1,384 (24.8%) samples. Most of the samples were from children under 5 years of age. The age-adjusted odds ratio (OR) of death for patients infected with parainfluenza virus 4 was 4.1 (95% confidence interval [95% CI] 2.0-8.2). Respiratory syncytial virus and rhinovirus had the highest frequency and proportion of coinfections, whereas parainfluenza virus 4 was associated with an increased risk of death.
Respiratory viruses have clinical and epidemiological importance. With the COVID-19 pandemic, interest has focused on SARS-CoV-2, but as a result, the number of samples available for the differential diagnosis of other respiratory viruses has increased. Cross-sectional study. To describe the epidemiological behavior of respiratory viruses based on a laboratory-based epidemiological surveillance system using data from 2017 to 2023. Univariate, bivariate and multivariate analyses of data from a laboratory database of respiratory viruses detected by multiplex RT-qPCR were performed. A total of 4,632 samples with positive results for at least 1 respiratory virus, not including influenza or SARS-CoV-2, were analyzed. The most common virus detected was respiratory syncytial virus in 1,467 (26.3%) samples, followed by rhinovirus in 1,384 (24.8%) samples. Most of the samples were from children under 5 years of age. The age-adjusted odds ratio (OR) of death for patients infected with parainfluenza virus 4 was 4.1 (95% confidence interval [95% CI] 2.0-8.2). Respiratory syncytial virus and rhinovirus had the highest frequency and proportion of coinfections, whereas parainfluenza virus 4 was associated with an increased risk of death.
Background Respiratory viruses have clinical and epidemiological importance. With the COVID-19 pandemic, interest has focused on SARS-CoV-2, but as a result, the number of samples available for the differential diagnosis of other respiratory viruses has increased. Study design Cross-sectional study. Objective To describe the epidemiological behavior of respiratory viruses based on a laboratory-based epidemiological surveillance system using data from 2017 to 2023. Methods Univariate, bivariate and multivariate analyses of data from a laboratory database of respiratory viruses detected by multiplex RT‒qPCR were performed. Results A total of 4,632 samples with positive results for at least 1 respiratory virus, not including influenza or SARS-CoV-2, were analyzed. The most common virus detected was respiratory syncytial virus in 1,467 (26.3%) samples, followed by rhinovirus in 1,384 (24.8%) samples. Most of the samples were from children under 5 years of age. The age-adjusted odds ratio (OR) of death for patients infected with parainfluenza virus 4 was 4.1 (95% confidence interval [95% CI] 2.0–8.2). Conclusion Respiratory syncytial virus and rhinovirus had the highest frequency and proportion of coinfections, whereas parainfluenza virus 4 was associated with an increased risk of death.
Background Respiratory viruses have clinical and epidemiological importance. With the COVID-19 pandemic, interest has focused on SARS-CoV-2, but as a result, the number of samples available for the differential diagnosis of other respiratory viruses has increased. Study design Cross-sectional study. Objective To describe the epidemiological behavior of respiratory viruses based on a laboratory-based epidemiological surveillance system using data from 2017 to 2023. Methods Univariate, bivariate and multivariate analyses of data from a laboratory database of respiratory viruses detected by multiplex RT-qPCR were performed. Results A total of 4,632 samples with positive results for at least 1 respiratory virus, not including influenza or SARS-CoV-2, were analyzed. The most common virus detected was respiratory syncytial virus in 1,467 (26.3%) samples, followed by rhinovirus in 1,384 (24.8%) samples. Most of the samples were from children under 5 years of age. The age-adjusted odds ratio (OR) of death for patients infected with parainfluenza virus 4 was 4.1 (95% confidence interval [95% CI] 2.0-8.2). Conclusion Respiratory syncytial virus and rhinovirus had the highest frequency and proportion of coinfections, whereas parainfluenza virus 4 was associated with an increased risk of death.
Respiratory viruses have clinical and epidemiological importance. With the COVID-19 pandemic, interest has focused on SARS-CoV-2, but as a result, the number of samples available for the differential diagnosis of other respiratory viruses has increased.BACKGROUNDRespiratory viruses have clinical and epidemiological importance. With the COVID-19 pandemic, interest has focused on SARS-CoV-2, but as a result, the number of samples available for the differential diagnosis of other respiratory viruses has increased.Cross-sectional study.STUDY DESIGNCross-sectional study.To describe the epidemiological behavior of respiratory viruses based on a laboratory-based epidemiological surveillance system using data from 2017 to 2023.OBJECTIVETo describe the epidemiological behavior of respiratory viruses based on a laboratory-based epidemiological surveillance system using data from 2017 to 2023.Univariate, bivariate and multivariate analyses of data from a laboratory database of respiratory viruses detected by multiplex RT‒qPCR were performed.METHODSUnivariate, bivariate and multivariate analyses of data from a laboratory database of respiratory viruses detected by multiplex RT‒qPCR were performed.A total of 4,632 samples with positive results for at least 1 respiratory virus, not including influenza or SARS-CoV-2, were analyzed. The most common virus detected was respiratory syncytial virus in 1,467 (26.3%) samples, followed by rhinovirus in 1,384 (24.8%) samples. Most of the samples were from children under 5 years of age. The age-adjusted odds ratio (OR) of death for patients infected with parainfluenza virus 4 was 4.1 (95% confidence interval [95% CI] 2.0-8.2).RESULTSA total of 4,632 samples with positive results for at least 1 respiratory virus, not including influenza or SARS-CoV-2, were analyzed. The most common virus detected was respiratory syncytial virus in 1,467 (26.3%) samples, followed by rhinovirus in 1,384 (24.8%) samples. Most of the samples were from children under 5 years of age. The age-adjusted odds ratio (OR) of death for patients infected with parainfluenza virus 4 was 4.1 (95% confidence interval [95% CI] 2.0-8.2).Respiratory syncytial virus and rhinovirus had the highest frequency and proportion of coinfections, whereas parainfluenza virus 4 was associated with an increased risk of death.CONCLUSIONRespiratory syncytial virus and rhinovirus had the highest frequency and proportion of coinfections, whereas parainfluenza virus 4 was associated with an increased risk of death.
Audience Academic
Author Cabrera Gaytán, David Alejandro
Anguiano Hernández, Yu Mei
Vallejos Parás, Alfonso
Sandoval Gutiérrez, Nancy
Arriaga Nieto, Lumumba
Martínez Miguel, Bernardo
Santacruz Tinoco, Clara Esperanza
Jaimes Betancourt, Leticia
Hernández Bautista, Porfirio Felipe
Moctezuma Paz, Alejandro
Alvarado Yaah, Julio Elias
AuthorAffiliation 1 Instituto Mexicano del Seguro Social, Coordinación de Calidad de Insumos y Laboratorios Especializados, México, México
Korea Disease Control and Prevention Agency, REPUBLIC OF KOREA
4 Instituto Mexicano del Seguro Social, Unidad de Medicina Familiar No. 7, México, México
2 Instituto Mexicano del Seguro Social, Coordinación de Vigilancia Epidemiológica, México, México
3 Instituto Mexicano del Seguro Social, Coordinación de Investigación en Salud, México, México
AuthorAffiliation_xml – name: 3 Instituto Mexicano del Seguro Social, Coordinación de Investigación en Salud, México, México
– name: Korea Disease Control and Prevention Agency, REPUBLIC OF KOREA
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BackLink https://www.ncbi.nlm.nih.gov/pubmed/39361667$$D View this record in MEDLINE/PubMed
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CitedBy_id crossref_primary_10_1016_j_microc_2025_113138
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Copyright Copyright: © 2024 Hernández Bautista et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
COPYRIGHT 2024 Public Library of Science
2024 Hernández Bautista et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.
2024 Hernández Bautista et al 2024 Hernández Bautista et al
2024 Hernández Bautista et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.
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– notice: 2024 Hernández Bautista et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.
– notice: 2024 Hernández Bautista et al 2024 Hernández Bautista et al
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License Copyright: © 2024 Hernández Bautista et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
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content type line 14
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CEST, YMAH, LJB and NSG also contributed equally to this work.
Competing Interests: The authors have declared that no competing interests exist.
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Snippet Respiratory viruses have clinical and epidemiological importance. With the COVID-19 pandemic, interest has focused on SARS-CoV-2, but as a result, the number...
Background Respiratory viruses have clinical and epidemiological importance. With the COVID-19 pandemic, interest has focused on SARS-CoV-2, but as a result,...
BackgroundRespiratory viruses have clinical and epidemiological importance. With the COVID-19 pandemic, interest has focused on SARS-CoV-2, but as a result,...
Background Respiratory viruses have clinical and epidemiological importance. With the COVID-19 pandemic, interest has focused on SARS-CoV-2, but as a result,...
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Adolescent
Adult
Age groups
Aged
Analysis
Biology and life sciences
Bivariate analysis
Child
Child, Preschool
Coinfection - epidemiology
Coinfection - virology
COVID-19
COVID-19 - epidemiology
COVID-19 - virology
Cross-Sectional Studies
Data analysis
Death
Development and progression
Diagnosis
Differential diagnosis
Epidemiological Monitoring
Epidemiology
Female
Health surveillance
Humans
Infant
Infant, Newborn
Influenza
ISO standards
Laboratories
Male
Medicine and Health Sciences
Middle Aged
Multivariate analysis
Pandemics
Parainfluenza
Respiratory diseases
Respiratory syncytial virus
Respiratory Syncytial Virus Infections - diagnosis
Respiratory Syncytial Virus Infections - epidemiology
Respiratory Syncytial Virus Infections - virology
Respiratory tract diseases
Respiratory Tract Infections - epidemiology
Respiratory Tract Infections - virology
Rhinovirus
Rhinovirus - genetics
Rhinovirus - isolation & purification
Risk factors
SARS-CoV-2 - isolation & purification
Severe acute respiratory syndrome coronavirus 2
Surveillance systems
Viral diseases
Virus diseases
Viruses
Young Adult
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Title Respiratory virus behavior: Results of laboratory-based epidemiological surveillance
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