Detection of low abundance RNA molecules in individual cells by flow cytometry
A variety of RNA analysis technologies are available for the detection of RNA transcripts from bulk cell populations. However, the techniques for RNA detection from individual cells have been limited. Here we adapt a novel in situ signal amplification method (the RNAScope® detection platform) for th...
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Published in | PloS one Vol. 8; no. 2; p. e57002 |
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Main Authors | , , , , |
Format | Journal Article |
Language | English |
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18.02.2013
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Abstract | A variety of RNA analysis technologies are available for the detection of RNA transcripts from bulk cell populations. However, the techniques for RNA detection from individual cells have been limited. Here we adapt a novel in situ signal amplification method (the RNAScope® detection platform) for the analysis of intracellular RNAs in individual cells by flow cytometry. Using novel target-specific probes that were designed to suppress background signals, we demonstrate the specific detection of HIV gag RNAs in HIV-infected cellular samples, in addition to bcr and abl mRNAs in the K562 cell line. This method was capable of distinguishing cells expressing low abundance RNA transcripts and correlated well with quantitative imaging analysis. Furthermore, multiple distinct RNA targets were simultaneously detected with a high specificity without interference. Overall, the sensitivity and specificity of this method will be useful for the analysis of functionally important RNA species from individual cells, even at very low copy numbers. |
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AbstractList | A variety of RNA analysis technologies are available for the detection of RNA transcripts from bulk cell populations. However, the techniques for RNA detection from individual cells have been limited. Here we adapt a novel in situ signal amplification method (the RNAScope® detection platform) for the analysis of intracellular RNAs in individual cells by flow cytometry. Using novel target-specific probes that were designed to suppress background signals, we demonstrate the specific detection of HIV gag RNAs in HIV-infected cellular samples, in addition to bcr and abl mRNAs in the K562 cell line. This method was capable of distinguishing cells expressing low abundance RNA transcripts and correlated well with quantitative imaging analysis. Furthermore, multiple distinct RNA targets were simultaneously detected with a high specificity without interference. Overall, the sensitivity and specificity of this method will be useful for the analysis of functionally important RNA species from individual cells, even at very low copy numbers. A variety of RNA analysis technologies are available for the detection of RNA transcripts from bulk cell populations. However, the techniques for RNA detection from individual cells have been limited. Here we adapt a novel in situ signal amplification method (the RNAScope® detection platform) for the analysis of intracellular RNAs in individual cells by flow cytometry. Using novel target-specific probes that were designed to suppress background signals, we demonstrate the specific detection of HIV gag RNAs in HIV-infected cellular samples, in addition to bcr and abl mRNAs in the K562 cell line. This method was capable of distinguishing cells expressing low abundance RNA transcripts and correlated well with quantitative imaging analysis. Furthermore, multiple distinct RNA targets were simultaneously detected with a high specificity without interference. Overall, the sensitivity and specificity of this method will be useful for the analysis of functionally important RNA species from individual cells, even at very low copy numbers. |
Audience | Academic |
Author | Mittar, Dev Lomas, Woodrow Hanley, Mary Beth Maino, Vernon Park, Emily |
AuthorAffiliation | Research and Development, BD Biosciences, San Jose, California, United States of America University of Crete, Greece |
AuthorAffiliation_xml | – name: University of Crete, Greece – name: Research and Development, BD Biosciences, San Jose, California, United States of America |
Author_xml | – sequence: 1 givenname: Mary Beth surname: Hanley fullname: Hanley, Mary Beth organization: Research and Development, BD Biosciences, San Jose, California, United States of America – sequence: 2 givenname: Woodrow surname: Lomas fullname: Lomas, Woodrow – sequence: 3 givenname: Dev surname: Mittar fullname: Mittar, Dev – sequence: 4 givenname: Vernon surname: Maino fullname: Maino, Vernon – sequence: 5 givenname: Emily surname: Park fullname: Park, Emily |
BackLink | https://www.ncbi.nlm.nih.gov/pubmed/23441230$$D View this record in MEDLINE/PubMed |
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Notes | ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 23 Competing Interests: The authors of this paper are all currently employed by BD Biosciences. However, this does not alter the authors' adherence to all the PLOS ONE policies on sharing data and materials. Conceived and designed the experiments: EP VM. Performed the experiments: MBH WL. Analyzed the data: MBH WL. Contributed reagents/materials/analysis tools: MBH WL. Wrote the paper: MBH EP DM. |
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SubjectTerms | Abundance BCR protein BCR-ABL protein Biology Blood & organ donations Cell Line Correlation analysis Cytometry Deoxyribonucleic acid DNA DNA probes Flow cytometry Flow Cytometry - methods Gene expression HIV Core Protein p24 - genetics HIV Infections HIV testing Humans Hybridization Infections Leukocytes, Mononuclear - metabolism Leukocytes, Mononuclear - virology Messenger RNA Nucleic Acid Hybridization R&D Reproducibility of Results Research & development Ribonucleic acid RNA RNA - chemistry RNA - genetics RNA, Messenger - chemistry RNA, Messenger - genetics Sensitivity analysis Sensitivity and Specificity Target detection Telomerase Viral infections |
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Title | Detection of low abundance RNA molecules in individual cells by flow cytometry |
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