Annotation of Differential Gene Expression in Small Yellow Follicles of a Broiler-Type Strain of Taiwan Country Chickens in Response to Acute Heat Stress
This study investigated global gene expression in the small yellow follicles (6-8 mm diameter) of broiler-type B strain Taiwan country chickens (TCCs) in response to acute heat stress. Twelve 30-wk-old TCC hens were divided into four groups: control hens maintained at 25°C and hens subjected to 38°C...
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Published in | PloS one Vol. 10; no. 11; p. e0143418 |
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Main Authors | , , , , , , , , |
Format | Journal Article |
Language | English |
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Public Library of Science
20.11.2015
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Abstract | This study investigated global gene expression in the small yellow follicles (6-8 mm diameter) of broiler-type B strain Taiwan country chickens (TCCs) in response to acute heat stress. Twelve 30-wk-old TCC hens were divided into four groups: control hens maintained at 25°C and hens subjected to 38°C acute heat stress for 2 h without recovery (H2R0), with 2-h recovery (H2R2), and with 6-h recovery (H2R6). Small yellow follicles were collected for RNA isolation and microarray analysis at the end of each time point. Results showed that 69, 51, and 76 genes were upregulated and 58, 15, 56 genes were downregulated after heat treatment of H2R0, H2R2, and H2R6, respectively, using a cutoff value of two-fold or higher. Gene ontology analysis revealed that these differentially expressed genes are associated with the biological processes of cell communication, developmental process, protein metabolic process, immune system process, and response to stimuli. Upregulation of heat shock protein 25, interleukin 6, metallopeptidase 1, and metalloproteinase 13, and downregulation of type II alpha 1 collagen, discoidin domain receptor tyrosine kinase 2, and Kruppel-like factor 2 suggested that acute heat stress induces proteolytic disintegration of the structural matrix and inflamed damage and adaptive responses of gene expression in the follicle cells. These suggestions were validated through gene expression, using quantitative real-time polymerase chain reaction. Functional annotation clarified that interleukin 6-related pathways play a critical role in regulating acute heat stress responses in the small yellow follicles of TCC hens. |
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AbstractList | This study investigated global gene expression in the small yellow follicles (6-8 mm diameter) of broiler-type B strain Taiwan country chickens (TCCs) in response to acute heat stress. Twelve 30-wk-old TCC hens were divided into four groups: control hens maintained at 25°C and hens subjected to 38°C acute heat stress for 2 h without recovery (H2R0), with 2-h recovery (H2R2), and with 6-h recovery (H2R6). Small yellow follicles were collected for RNA isolation and microarray analysis at the end of each time point. Results showed that 69, 51, and 76 genes were upregulated and 58, 15, 56 genes were downregulated after heat treatment of H2R0, H2R2, and H2R6, respectively, using a cutoff value of two-fold or higher. Gene ontology analysis revealed that these differentially expressed genes are associated with the biological processes of cell communication, developmental process, protein metabolic process, immune system process, and response to stimuli. Upregulation of heat shock protein 25, interleukin 6, metallopeptidase 1, and metalloproteinase 13, and downregulation of type II alpha 1 collagen, discoidin domain receptor tyrosine kinase 2, and Kruppel-like factor 2 suggested that acute heat stress induces proteolytic disintegration of the structural matrix and inflamed damage and adaptive responses of gene expression in the follicle cells. These suggestions were validated through gene expression, using quantitative real-time polymerase chain reaction. Functional annotation clarified that interleukin 6-related pathways play a critical role in regulating acute heat stress responses in the small yellow follicles of TCC hens. This study investigated global gene expression in the small yellow follicles (6-8 mm diameter) of broiler-type B strain Taiwan country chickens (TCCs) in response to acute heat stress. Twelve 30-wk-old TCC hens were divided into four groups: control hens maintained at 25°C and hens subjected to 38°C acute heat stress for 2 h without recovery (H2R0), with 2-h recovery (H2R2), and with 6-h recovery (H2R6). Small yellow follicles were collected for RNA isolation and microarray analysis at the end of each time point. Results showed that 69, 51, and 76 genes were upregulated and 58, 15, 56 genes were downregulated after heat treatment of H2R0, H2R2, and H2R6, respectively, using a cutoff value of two-fold or higher. Gene ontology analysis revealed that these differentially expressed genes are associated with the biological processes of cell communication, developmental process, protein metabolic process, immune system process, and response to stimuli. Upregulation of heat shock protein 25, interleukin 6, metallopeptidase 1, and metalloproteinase 13, and downregulation of type II alpha 1 collagen, discoidin domain receptor tyrosine kinase 2, and Kruppel-like factor 2 suggested that acute heat stress induces proteolytic disintegration of the structural matrix and inflamed damage and adaptive responses of gene expression in the follicle cells. These suggestions were validated through gene expression, using quantitative real-time polymerase chain reaction. Functional annotation clarified that interleukin 6-related pathways play a critical role in regulating acute heat stress responses in the small yellow follicles of TCC hens.This study investigated global gene expression in the small yellow follicles (6-8 mm diameter) of broiler-type B strain Taiwan country chickens (TCCs) in response to acute heat stress. Twelve 30-wk-old TCC hens were divided into four groups: control hens maintained at 25°C and hens subjected to 38°C acute heat stress for 2 h without recovery (H2R0), with 2-h recovery (H2R2), and with 6-h recovery (H2R6). Small yellow follicles were collected for RNA isolation and microarray analysis at the end of each time point. Results showed that 69, 51, and 76 genes were upregulated and 58, 15, 56 genes were downregulated after heat treatment of H2R0, H2R2, and H2R6, respectively, using a cutoff value of two-fold or higher. Gene ontology analysis revealed that these differentially expressed genes are associated with the biological processes of cell communication, developmental process, protein metabolic process, immune system process, and response to stimuli. Upregulation of heat shock protein 25, interleukin 6, metallopeptidase 1, and metalloproteinase 13, and downregulation of type II alpha 1 collagen, discoidin domain receptor tyrosine kinase 2, and Kruppel-like factor 2 suggested that acute heat stress induces proteolytic disintegration of the structural matrix and inflamed damage and adaptive responses of gene expression in the follicle cells. These suggestions were validated through gene expression, using quantitative real-time polymerase chain reaction. Functional annotation clarified that interleukin 6-related pathways play a critical role in regulating acute heat stress responses in the small yellow follicles of TCC hens. |
Audience | Academic |
Author | Chen, Chih-Feng Huang, San-Yuan Tu, Wei-Lin Cheng, Chuen-Yu Wang, Shih-Han Tang, Pin-Chi Chen, Hsin-Hsin Chen, Shuen-Ei Lee, Yen-Pai |
AuthorAffiliation | 2 Agricultural Biotechnology Center, National Chung Hsing University, Taichung, Taiwan 4 Department of Veterinary Medicine, National Chung Hsing University, Taichung, Taiwan 3 Center for the Integrative and Evolutionary Galliformes Genomics, iEGG Center, National Chung Hsing University, Taichung, Taiwan 1 Department of Animal Science, National Chung Hsing University, Taichung, Taiwan Wageningen UR Livestock Research, NETHERLANDS 5 Center of Nanoscience and Nanotechnology, National Chung Hsing University, Taichung, Taiwan |
AuthorAffiliation_xml | – name: 5 Center of Nanoscience and Nanotechnology, National Chung Hsing University, Taichung, Taiwan – name: 2 Agricultural Biotechnology Center, National Chung Hsing University, Taichung, Taiwan – name: 4 Department of Veterinary Medicine, National Chung Hsing University, Taichung, Taiwan – name: 1 Department of Animal Science, National Chung Hsing University, Taichung, Taiwan – name: 3 Center for the Integrative and Evolutionary Galliformes Genomics, iEGG Center, National Chung Hsing University, Taichung, Taiwan – name: Wageningen UR Livestock Research, NETHERLANDS |
Author_xml | – sequence: 1 givenname: Chuen-Yu surname: Cheng fullname: Cheng, Chuen-Yu – sequence: 2 givenname: Wei-Lin surname: Tu fullname: Tu, Wei-Lin – sequence: 3 givenname: Shih-Han surname: Wang fullname: Wang, Shih-Han – sequence: 4 givenname: Pin-Chi surname: Tang fullname: Tang, Pin-Chi – sequence: 5 givenname: Chih-Feng surname: Chen fullname: Chen, Chih-Feng – sequence: 6 givenname: Hsin-Hsin surname: Chen fullname: Chen, Hsin-Hsin – sequence: 7 givenname: Yen-Pai surname: Lee fullname: Lee, Yen-Pai – sequence: 8 givenname: Shuen-Ei surname: Chen fullname: Chen, Shuen-Ei – sequence: 9 givenname: San-Yuan surname: Huang fullname: Huang, San-Yuan |
BackLink | https://www.ncbi.nlm.nih.gov/pubmed/26587838$$D View this record in MEDLINE/PubMed |
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Copyright | COPYRIGHT 2015 Public Library of Science 2015 Cheng et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. 2015 Cheng et al 2015 Cheng et al |
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Notes | ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 14 content type line 23 Competing Interests: The authors have declared that no competing interests exist. Conceived and designed the experiments: PCT CFC YPL SEC SYH. Performed the experiments: CYC WLT SHW HHC. Analyzed the data: CYC WLT. Contributed reagents/materials/analysis tools: CFC YPL SYH. Wrote the paper: CYC WLT SEC SYH. |
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Snippet | This study investigated global gene expression in the small yellow follicles (6-8 mm diameter) of broiler-type B strain Taiwan country chickens (TCCs) in... This study investigated global gene expression in the small yellow follicles (6–8 mm diameter) of broiler-type B strain Taiwan country chickens (TCCs) in... |
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SubjectTerms | Agricultural biotechnology Animal sciences Animals Annotations Biological activity Body Temperature Cell interactions Chickens Chickens - physiology Collagen Collagen (type II) Communications systems Disintegration DNA microarrays DNA Primers Environmental aspects Female Follicles Galliformes Gene expression Gene Expression Profiling Gene Expression Regulation Genes Genetic aspects Genomics Heat Heat shock proteins Heat stress Heat tolerance Heat treatment Heat-Shock Response - genetics Hot Temperature Humidity Immune system Inflammation Interleukin 6 Interleukin-6 - metabolism Krueppel-like factor Metalloproteinase Oligonucleotide Array Sequence Analysis Ovarian Follicle - metabolism Ovarian Follicle - pathology Physiological aspects Polymerase chain reaction Poultry Protein-tyrosine kinase receptors Proteins Proteolysis Real-Time Polymerase Chain Reaction Recovery Reverse Transcriptase Polymerase Chain Reaction Ribonucleic acid RNA RNA - analysis RNA polymerase Strain Stress, Physiological Taiwan Tyrosine Up-Regulation Zoology |
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Title | Annotation of Differential Gene Expression in Small Yellow Follicles of a Broiler-Type Strain of Taiwan Country Chickens in Response to Acute Heat Stress |
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