Detection of novel polyomaviruses, TSPyV, HPyV6, HPyV7, HPyV9 and MWPyV in feces, urine, blood, respiratory swabs and cerebrospinal fluid
Eight novel human polyomaviruses have been discovered since 2007. Prevalence rates and tissue tropism for the most recent members HPyV 6, 7, 9, TSPyV and MWPyV are largely unknown. We used real-time PCR to determine the presence of HPyV 6, 7, 9, TSPyV and MWPyV in feces (n = 263), urine (n = 189), b...
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Published in | PloS one Vol. 8; no. 5; p. e62764 |
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Main Authors | , , , , , , , , , , |
Format | Journal Article |
Language | English |
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08.05.2013
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Abstract | Eight novel human polyomaviruses have been discovered since 2007. Prevalence rates and tissue tropism for the most recent members HPyV 6, 7, 9, TSPyV and MWPyV are largely unknown. We used real-time PCR to determine the presence of HPyV 6, 7, 9, TSPyV and MWPyV in feces (n = 263), urine (n = 189), blood (n = 161), respiratory swabs (n = 1385) and cerebrospinal fluid (n = 171) from both healthy control children and children and adults undergoing diagnostic testing. Whole genome sequencing was able to be performed on 9 MWPyV positive specimens. Novel polyomaviruses were only detected in respiratory swabs and feces, with no detections of HPyV 9 in any sample type. MWPyV was found to be the most prevalent novel polyomavirus, being detected in 18 (1.5%) respiratory specimens from symptomatic patients, 16 (9.8%) respiratory sample from healthy control children, 11 (5.9%) fecal specimens from patient suffering gastrointestinal illness, and in 13 (15.3%) of feces from healthy control children. MWPyV was found only in respiratory and fecal specimens from children, the oldest being 9 years old. HPyV 6, 7, 9 and TSPyV were also detected in respiratory specimens and fecal specimens at low prevalence (<1.3%). The majority of these detections were found in immunocompromised patients. Our findings suggest that MWPyV can result in a subclinical infection, persistent or intermittent shedding, particularly in young children. The other novel polyomaviruses were also found in respiratory and fecal specimens, but at lower prevalence and most commonly in immunocompromised individuals. |
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AbstractList | Eight novel human polyomaviruses have been discovered since 2007. Prevalence rates and tissue tropism for the most recent members HPyV 6, 7, 9, TSPyV and MWPyV are largely unknown. We used real-time PCR to determine the presence of HPyV 6, 7, 9, TSPyV and MWPyV in feces (n = 263), urine (n = 189), blood (n = 161), respiratory swabs (n = 1385) and cerebrospinal fluid (n = 171) from both healthy control children and children and adults undergoing diagnostic testing. Whole genome sequencing was able to be performed on 9 MWPyV positive specimens. Novel polyomaviruses were only detected in respiratory swabs and feces, with no detections of HPyV 9 in any sample type. MWPyV was found to be the most prevalent novel polyomavirus, being detected in 18 (1.5%) respiratory specimens from symptomatic patients, 16 (9.8%) respiratory sample from healthy control children, 11 (5.9%) fecal specimens from patient suffering gastrointestinal illness, and in 13 (15.3%) of feces from healthy control children. MWPyV was found only in respiratory and fecal specimens from children, the oldest being 9 years old. HPyV 6, 7, 9 and TSPyV were also detected in respiratory specimens and fecal specimens at low prevalence (<1.3%). The majority of these detections were found in immunocompromised patients. Our findings suggest that MWPyV can result in a subclinical infection, persistent or intermittent shedding, particularly in young children. The other novel polyomaviruses were also found in respiratory and fecal specimens, but at lower prevalence and most commonly in immunocompromised individuals. |
Audience | Academic |
Author | Nissen, Michael D O'Neill, Nicholas Ye, Suifang Whiley, David M Sloots, Theo P Lambert, Stephen B Bowes, Sharleen Rockett, Rebecca J Robson, Jenny Wang, David Bialasiewicz, Seweryn |
AuthorAffiliation | 4 Departments of Molecular Microbiology and Pathology & Immunology, Washington University School of Medicine, St. Louis, Missouri, United States of America 2 Department of Microbiology, Sullivan Nicolaides Pathology, Brisbane, Australia 1 Queensland Paediatric Infectious Diseases Laboratory, Queensland Children’s Medical Research Institute, The University of Queensland, Brisbane, Queensland, Australia University of Kansas Medical Center, United States of America 3 Immunisation Program, Communicable Diseases Branch, Queensland Health, Herston, Australia 5 Microbiology Division, Pathology Queensland Central Laboratory, Herston, Queensland, Australia |
AuthorAffiliation_xml | – name: 4 Departments of Molecular Microbiology and Pathology & Immunology, Washington University School of Medicine, St. Louis, Missouri, United States of America – name: 5 Microbiology Division, Pathology Queensland Central Laboratory, Herston, Queensland, Australia – name: 2 Department of Microbiology, Sullivan Nicolaides Pathology, Brisbane, Australia – name: 3 Immunisation Program, Communicable Diseases Branch, Queensland Health, Herston, Australia – name: 1 Queensland Paediatric Infectious Diseases Laboratory, Queensland Children’s Medical Research Institute, The University of Queensland, Brisbane, Queensland, Australia – name: University of Kansas Medical Center, United States of America |
Author_xml | – sequence: 1 givenname: Rebecca J surname: Rockett fullname: Rockett, Rebecca J email: r.rockett@uq.edu.au organization: Queensland Paediatric Infectious Diseases Laboratory, Queensland Children's Medical Research Institute, The University of Queensland, Brisbane, Queensland, Australia. r.rockett@uq.edu.au – sequence: 2 givenname: Theo P surname: Sloots fullname: Sloots, Theo P – sequence: 3 givenname: Sharleen surname: Bowes fullname: Bowes, Sharleen – sequence: 4 givenname: Nicholas surname: O'Neill fullname: O'Neill, Nicholas – sequence: 5 givenname: Suifang surname: Ye fullname: Ye, Suifang – sequence: 6 givenname: Jenny surname: Robson fullname: Robson, Jenny – sequence: 7 givenname: David M surname: Whiley fullname: Whiley, David M – sequence: 8 givenname: Stephen B surname: Lambert fullname: Lambert, Stephen B – sequence: 9 givenname: David surname: Wang fullname: Wang, David – sequence: 10 givenname: Michael D surname: Nissen fullname: Nissen, Michael D – sequence: 11 givenname: Seweryn surname: Bialasiewicz fullname: Bialasiewicz, Seweryn |
BackLink | https://www.ncbi.nlm.nih.gov/pubmed/23667518$$D View this record in MEDLINE/PubMed |
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Notes | ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 23 Competing Interests: Jenny Robson is employed by Sullivan Nicolaides Pathology but this does not alter the authors’ adherence to all the PLOS ONE policies on sharing data and materials. Conceived and designed the experiments: RJR TPS S. Bialasiewicz. Performed the experiments: RJR S. Bowes. Analyzed the data: RJR S. Bialasiewicz S. Bowes TPS DMW. Contributed reagents/materials/analysis tools: SY NO SBL JR DW DMW MDN. Wrote the paper: RJR S. Bialasiewicz S. Bowes TPS DMW. |
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Snippet | Eight novel human polyomaviruses have been discovered since 2007. Prevalence rates and tissue tropism for the most recent members HPyV 6, 7, 9, TSPyV and MWPyV... |
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SubjectTerms | Adult Adults Biology Blood Blood - virology Cerebrospinal fluid Cerebrospinal Fluid - virology Child Children Deoxyribonucleic acid Diagnostic systems DNA DNA sequencing Feces Feces - virology Gene sequencing Genome, Viral - genetics Genomes Genomics Health aspects Humans Immunocompromised hosts Infections Infectious diseases Laboratories Medical research Medicine Pathology Patients Pediatrics Polyomavirus - genetics Polyomavirus Infections - epidemiology Polyomavirus Infections - genetics Prevalence Queensland - epidemiology Real-Time Polymerase Chain Reaction Respiration Respiratory System - virology Sequence Analysis, DNA Shedding Species Specificity Studies Subclinical infection Tropism Urine Urine - virology Virology Viruses |
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Title | Detection of novel polyomaviruses, TSPyV, HPyV6, HPyV7, HPyV9 and MWPyV in feces, urine, blood, respiratory swabs and cerebrospinal fluid |
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