Physiological and Genomic Features of a Novel Sulfur-Oxidizing Gammaproteobacterium Belonging to a Previously Uncultivated Symbiotic Lineage Isolated from a Hydrothermal Vent

• Published in: PloS one Vol. 9; no. 8; p. e104959
• Main Authors: Nunoura, Takuro, Takaki, Yoshihiro, Kazama, Hiromi, Kakuta, Jungo, Shimamura, Shigeru, Makita, Hiroko, Hirai, Miho, Miyazaki, Masayuki, Takai, Ken
• Format: Journal Article
• Language: English
• Published: United States Public Library of Science 18.08.2014; Public Library of Science (PLoS)
• Subjects: Amino acids; Bacteria; Bacterial Secretion Systems - genetics; Biofilms; Biology and Life Sciences; Carbon sources; Chemotaxis; Deep sea; Earth; Earth science; Ecology and Environmental Sciences; Ecosystems; Endosymbionts; Energy Metabolism; Energy sources; Epsilonproteobacteria; Field study; Gammaproteobacteria; Gammaproteobacteria - genetics; Gammaproteobacteria - isolation & purification; Gammaproteobacteria - ultrastructure; Gastropods; Genome, Bacterial; Genomes; Geobiology; Growth conditions; Homology; Hydrothermal plumes; Hydrothermal vent ecosystems; Hydrothermal Vents - microbiology; Metabolic Networks and Pathways; Metabolism; Microorganisms; Molecular Sequence Data; Molecular Typing; Nitrate reduction; Nitrates; Nitrogen sources; Organic acids; Oxidation; Pathogenesis; Phylogeny; Physiology; Ribosome Subunits, Small, Bacterial - genetics; RNA; rRNA; Sugar; Sulfur; Sulfur compounds; Sulfur oxidation; Symbionts; Virulence; Water Microbiology; United States > US; Japan
• DOI: 10.1371/journal.pone.0104959
• ISSN: 1932-6203

Strain Hiromi 1, a sulfur-oxidizing gammaproteobacterium was isolated from a hydrothermal vent chimney in the Okinawa Trough and represents a novel genus that may include a phylogenetic group found as endosymbionts of deep-sea gastropods. The SSU rRNA gene sequence similarity between strain Hiromi 1 and the gastropod endosymbionts was approximately 97%. The strain was shown to grow both chemolithoautotrophically and chemolithoheterotrophically with an energy metabolism of sulfur oxidation and O2 or nitrate reduction. Under chemolithoheterotrophic growth conditions, the strain utilized organic acids and proteinaceous compounds as the carbon and/or nitrogen sources but not the energy source. Various sugars did not support growth as a sole carbon source. The observation of chemolithoheterotrophy in this strain is in line with metagenomic analyses of endosymbionts suggesting the occurrence of chemolithoheterotrophy in gammaproteobacterial symbionts. Chemolithoheterotrophy and the presence of homologous genes for virulence- and quorum sensing-related functions suggest that the sulfur-oxidizing chomolithotrophic microbes seek animal bodies and microbial biofilm formation to obtain supplemental organic carbons in hydrothermal ecosystems.