Automatic detection, classification, and quantification of sciaenid fish calls in an estuarine soundscape in the Southeast United States

In the Southeast USA, major contributors to estuarine soundscapes are the courtship calls produced by fish species belonging to the family Sciaenidae. Long-term monitoring of sciaenid courtship sounds may be valuable in understanding reproductive phenology, but this approach produces massive acousti...

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Published inPloS one Vol. 14; no. 1; p. e0209914
Main Authors Monczak, Agnieszka, Ji, Yiming, Soueidan, Jamileh, Montie, Eric W
Format Journal Article
LanguageEnglish
Published United States Public Library of Science 16.01.2019
Public Library of Science (PLoS)
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Abstract In the Southeast USA, major contributors to estuarine soundscapes are the courtship calls produced by fish species belonging to the family Sciaenidae. Long-term monitoring of sciaenid courtship sounds may be valuable in understanding reproductive phenology, but this approach produces massive acoustic datasets. With this in mind, we designed a feature-based, signal detector for sciaenid fish calls and tested the efficacy of this detector against manually reviewed data. Acoustic recorders were deployed to collect sound samples for 2 min every 20 min at four stations in the May River estuary, South Carolina, USA from February to November, 2014. Manual analysis of acoustic files revealed that four fish species, belonging to the family Sciaenidae, were the major sound producers in this estuarine soundscape, and included black drum (Pogonias cromis), silver perch (Bairdiella chrysoura), spotted seatrout (Cynoscion nebulosus), and red drum (Sciaenops ocellatus). Recorded calls served as an acoustic library of signature features that were used to create a signal detector to automatically detect, classify, and quantify the number of calls in each acoustic file. Correlation between manual and automatic detection was significant and precision varied from 61% to 100%. Automatic detection provided quantitative data on calling rates for this long-term data set. Positive temperature anomalies increased calling rates of black drum, silver perch, and spotted seatrout, while negative anomalies increased calling rates of red drum. Acoustic monitoring combined with automatic detection could be an additional or alternative method for monitoring sciaenid spawning and changes in phenology associated with climate change.
AbstractList In the Southeast USA, major contributors to estuarine soundscapes are the courtship calls produced by fish species belonging to the family Sciaenidae. Long-term monitoring of sciaenid courtship sounds may be valuable in understanding reproductive phenology, but this approach produces massive acoustic datasets. With this in mind, we designed a feature-based, signal detector for sciaenid fish calls and tested the efficacy of this detector against manually reviewed data. Acoustic recorders were deployed to collect sound samples for 2 min every 20 min at four stations in the May River estuary, South Carolina, USA from February to November, 2014. Manual analysis of acoustic files revealed that four fish species, belonging to the family Sciaenidae, were the major sound producers in this estuarine soundscape, and included black drum (Pogonias cromis), silver perch (Bairdiella chrysoura), spotted seatrout (Cynoscion nebulosus), and red drum (Sciaenops ocellatus). Recorded calls served as an acoustic library of signature features that were used to create a signal detector to automatically detect, classify, and quantify the number of calls in each acoustic file. Correlation between manual and automatic detection was significant and precision varied from 61% to 100%. Automatic detection provided quantitative data on calling rates for this long-term data set. Positive temperature anomalies increased calling rates of black drum, silver perch, and spotted seatrout, while negative anomalies increased calling rates of red drum. Acoustic monitoring combined with automatic detection could be an additional or alternative method for monitoring sciaenid spawning and changes in phenology associated with climate change.
In the Southeast USA, major contributors to estuarine soundscapes are the courtship calls produced by fish species belonging to the family Sciaenidae. Long-term monitoring of sciaenid courtship sounds may be valuable in understanding reproductive phenology, but this approach produces massive acoustic datasets. With this in mind, we designed a feature-based, signal detector for sciaenid fish calls and tested the efficacy of this detector against manually reviewed data. Acoustic recorders were deployed to collect sound samples for 2 min every 20 min at four stations in the May River estuary, South Carolina, USA from February to November, 2014. Manual analysis of acoustic files revealed that four fish species, belonging to the family Sciaenidae, were the major sound producers in this estuarine soundscape, and included black drum ( Pogonias cromis ), silver perch ( Bairdiella chrysoura ), spotted seatrout ( Cynoscion nebulosus ), and red drum ( Sciaenops ocellatus ). Recorded calls served as an acoustic library of signature features that were used to create a signal detector to automatically detect, classify, and quantify the number of calls in each acoustic file. Correlation between manual and automatic detection was significant and precision varied from 61% to 100%. Automatic detection provided quantitative data on calling rates for this long-term data set. Positive temperature anomalies increased calling rates of black drum, silver perch, and spotted seatrout, while negative anomalies increased calling rates of red drum. Acoustic monitoring combined with automatic detection could be an additional or alternative method for monitoring sciaenid spawning and changes in phenology associated with climate change.
Audience Academic
Author Ji, Yiming
Soueidan, Jamileh
Monczak, Agnieszka
Montie, Eric W
AuthorAffiliation 2 Department of Mathematics and Computational Science, University of South Carolina Beaufort, Bluffton, South Carolina, United States of America
University of Auckland, NEW ZEALAND
1 Department of Natural Sciences, University of South Carolina Beaufort, Bluffton, South Carolina, United States of America
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Snippet In the Southeast USA, major contributors to estuarine soundscapes are the courtship calls produced by fish species belonging to the family Sciaenidae....
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StartPage e0209914
SubjectTerms Acoustics
Algorithms
Analysis
Animals
Anomalies
Biology and Life Sciences
Classification
Climate change
Communication
Courtship
Creeks & streams
Cynoscion nebulosus
Drum
Earth Sciences
Ecology and Environmental Sciences
Environmental aspects
Estuaries
Fish
Fishes - classification
Fishes - physiology
Monitoring
Noise
Phenology
Physical Sciences
Recorders
Researchers
Rivers
Sciaenidae
Sensors
Signal detectors
Signal processing
Sound
South Carolina
Spawning
Temperature anomalies
Vocalization, Animal
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Title Automatic detection, classification, and quantification of sciaenid fish calls in an estuarine soundscape in the Southeast United States
URI https://www.ncbi.nlm.nih.gov/pubmed/30650120
https://www.proquest.com/docview/2167792896/abstract/
https://pubmed.ncbi.nlm.nih.gov/PMC6334970
https://doaj.org/article/11f86a41d1574ca597d0ea6d99792146
http://dx.doi.org/10.1371/journal.pone.0209914
Volume 14
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