Bifidobacteria Abundance-Featured Gut Microbiota Compositional Change in Patients with Behcet's Disease
Gut microbiota compositional alteration may have an association with immune dysfunction in patients with Behcet's disease (BD). We conducted a fecal metagenomic analysis of BD patients. We analyzed fecal microbiota obtained from 12 patients with BD and 12 normal individuals by sequencing of 16S...
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Published in | PloS one Vol. 11; no. 4; p. e0153746 |
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Main Authors | , , , , , , , , , |
Format | Journal Article |
Language | English |
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22.04.2016
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Abstract | Gut microbiota compositional alteration may have an association with immune dysfunction in patients with Behcet's disease (BD). We conducted a fecal metagenomic analysis of BD patients. We analyzed fecal microbiota obtained from 12 patients with BD and 12 normal individuals by sequencing of 16S ribosomal RNA gene. We compared the relative abundance of bacterial taxa. Direct comparison of the relative abundance of bacterial taxa demonstrated that the genera Bifidobacterium and Eggerthella increased significantly and the genera Megamonas and Prevotella decreased significantly in BD patients compared with normal individuals. A linear discriminant analysis of bacterial taxa showed that the phylum Actinobacteria, including Bifidobacterium, and the family Lactobacillaceae exhibited larger positive effect sizes than other bacteria in patients with BD. The phylum Firmicutes and the class Clostridia had large effect sizes in normal individuals. There was no significant difference in annotated species numbers (as numbers of operational taxonomic unit; OTU) and bacterial diversity of each sample (alpha diversity) between BD patients and normal individuals. We next assigned each sample to a position using three axes by principal coordinates analysis of the OTU table. The two groups had a significant distance as beta diversity in the 3-axis space. Fecal sIgA concentrations increased significantly in BD patients but did not correlate with any bacterial taxonomic abundance. These data suggest that the compositional changes of gut microbes may be one type of dysbiosis (unfavorable microbiota alteration) in patients with BD. The dysbiosis may have an association with the pathophysiology of BD. |
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AbstractList | Gut microbiota compositional alteration may have an association with immune dysfunction in patients with Behcet’s disease (BD). We conducted a fecal metagenomic analysis of BD patients. We analyzed fecal microbiota obtained from 12 patients with BD and 12 normal individuals by sequencing of 16S ribosomal RNA gene. We compared the relative abundance of bacterial taxa. Direct comparison of the relative abundance of bacterial taxa demonstrated that the genera Bifidobacterium and Eggerthella increased significantly and the genera Megamonas and Prevotella decreased significantly in BD patients compared with normal individuals. A linear discriminant analysis of bacterial taxa showed that the phylum Actinobacteria, including Bifidobacterium, and the family Lactobacillaceae exhibited larger positive effect sizes than other bacteria in patients with BD. The phylum Firmicutes and the class Clostridia had large effect sizes in normal individuals. There was no significant difference in annotated species numbers (as numbers of operational taxonomic unit; OTU) and bacterial diversity of each sample (alpha diversity) between BD patients and normal individuals. We next assigned each sample to a position using three axes by principal coordinates analysis of the OTU table. The two groups had a significant distance as beta diversity in the 3-axis space. Fecal sIgA concentrations increased significantly in BD patients but did not correlate with any bacterial taxonomic abundance. These data suggest that the compositional changes of gut microbes may be one type of dysbiosis (unfavorable microbiota alteration) in patients with BD. The dysbiosis may have an association with the pathophysiology of BD. Gut microbiota compositional alteration may have an association with immune dysfunction in patients with Behcet’s disease (BD). We conducted a fecal metagenomic analysis of BD patients. We analyzed fecal microbiota obtained from 12 patients with BD and 12 normal individuals by sequencing of 16S ribosomal RNA gene. We compared the relative abundance of bacterial taxa. Direct comparison of the relative abundance of bacterial taxa demonstrated that the genera Bifidobacterium and Eggerthella increased significantly and the genera Megamonas and Prevotella decreased significantly in BD patients compared with normal individuals. A linear discriminant analysis of bacterial taxa showed that the phylum Actinobacteria , including Bifidobacterium , and the family Lactobacillaceae exhibited larger positive effect sizes than other bacteria in patients with BD. The phylum Firmicutes and the class Clostridia had large effect sizes in normal individuals. There was no significant difference in annotated species numbers (as numbers of operational taxonomic unit; OTU) and bacterial diversity of each sample (alpha diversity) between BD patients and normal individuals. We next assigned each sample to a position using three axes by principal coordinates analysis of the OTU table. The two groups had a significant distance as beta diversity in the 3-axis space. Fecal sIgA concentrations increased significantly in BD patients but did not correlate with any bacterial taxonomic abundance. These data suggest that the compositional changes of gut microbes may be one type of dysbiosis (unfavorable microbiota alteration) in patients with BD. The dysbiosis may have an association with the pathophysiology of BD. |
Audience | Academic |
Author | Kubota, Takao Takai, Kenji Wakisaka, Sueshige Arimitsu, Nagisa Takada, Erika Ueda, Yuji Suzuki, Noboru Fujiwara, Naruyoshi Shimizu, Jun Suzuki, Tomoko |
AuthorAffiliation | 1 Department of Immunology and Medicine, St. Marianna University School of Medicine, Kawasaki, Japan 2 Department of Medicine, the Japan Self Defense Forces Central Hospital, Tokyo, Japan National Cancer Institute, UNITED STATES |
AuthorAffiliation_xml | – name: National Cancer Institute, UNITED STATES – name: 1 Department of Immunology and Medicine, St. Marianna University School of Medicine, Kawasaki, Japan – name: 2 Department of Medicine, the Japan Self Defense Forces Central Hospital, Tokyo, Japan |
Author_xml | – sequence: 1 givenname: Jun surname: Shimizu fullname: Shimizu, Jun organization: Department of Immunology and Medicine, St. Marianna University School of Medicine, Kawasaki, Japan – sequence: 2 givenname: Takao surname: Kubota fullname: Kubota, Takao organization: Department of Medicine, the Japan Self Defense Forces Central Hospital, Tokyo, Japan – sequence: 3 givenname: Erika surname: Takada fullname: Takada, Erika organization: Department of Immunology and Medicine, St. Marianna University School of Medicine, Kawasaki, Japan – sequence: 4 givenname: Kenji surname: Takai fullname: Takai, Kenji organization: Department of Immunology and Medicine, St. Marianna University School of Medicine, Kawasaki, Japan – sequence: 5 givenname: Naruyoshi surname: Fujiwara fullname: Fujiwara, Naruyoshi organization: Department of Immunology and Medicine, St. Marianna University School of Medicine, Kawasaki, Japan – sequence: 6 givenname: Nagisa surname: Arimitsu fullname: Arimitsu, Nagisa organization: Department of Immunology and Medicine, St. Marianna University School of Medicine, Kawasaki, Japan – sequence: 7 givenname: Yuji surname: Ueda fullname: Ueda, Yuji organization: Department of Immunology and Medicine, St. Marianna University School of Medicine, Kawasaki, Japan – sequence: 8 givenname: Sueshige surname: Wakisaka fullname: Wakisaka, Sueshige organization: Department of Immunology and Medicine, St. Marianna University School of Medicine, Kawasaki, Japan – sequence: 9 givenname: Tomoko surname: Suzuki fullname: Suzuki, Tomoko organization: Department of Immunology and Medicine, St. Marianna University School of Medicine, Kawasaki, Japan – sequence: 10 givenname: Noboru surname: Suzuki fullname: Suzuki, Noboru organization: Department of Immunology and Medicine, St. Marianna University School of Medicine, Kawasaki, Japan |
BackLink | https://www.ncbi.nlm.nih.gov/pubmed/27105322$$D View this record in MEDLINE/PubMed |
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Notes | ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 23 Conceived and designed the experiments: JS TK ET KT NS. Performed the experiments: JS TK ET KT. Analyzed the data: JS KT. Contributed reagents/materials/analysis tools: JS TK ET KT NF NA YU SW. Wrote the paper: JS TK KT NF NA TS NS. Competing Interests: The authors have declared that no competing interests exist. |
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SubjectTerms | Abundance Actinobacteria Adolescent Adult Aged Arthritis Autoimmune diseases Bacteria Behcet Syndrome - microbiology Behcet's syndrome Bifidobacteria Bifidobacterium Bifidobacterium - isolation & purification Biodiversity Biology and Life Sciences Complications and side effects Computer and Information Sciences Deoxyribonucleic acid Discriminant analysis Disease DNA Drug dosages Dysbacteriosis Fecal microflora Feces Female Firmicutes Gene sequencing Genera Genomes Hospitals Humans Immunology Intestinal microflora Intestines - microbiology Lactobacillaceae Male Medicine Medicine and Health Sciences Metabolism Metabolites Microbiota Microbiota (Symbiotic organisms) Middle Aged Patients Physiological aspects Prevotella Relative abundance Ribonucleic acid RNA rRNA 16S Species diversity Taxa Vein & artery diseases Young Adult |
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Title | Bifidobacteria Abundance-Featured Gut Microbiota Compositional Change in Patients with Behcet's Disease |
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