Bifidobacteria Abundance-Featured Gut Microbiota Compositional Change in Patients with Behcet's Disease

Gut microbiota compositional alteration may have an association with immune dysfunction in patients with Behcet's disease (BD). We conducted a fecal metagenomic analysis of BD patients. We analyzed fecal microbiota obtained from 12 patients with BD and 12 normal individuals by sequencing of 16S...

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Published inPloS one Vol. 11; no. 4; p. e0153746
Main Authors Shimizu, Jun, Kubota, Takao, Takada, Erika, Takai, Kenji, Fujiwara, Naruyoshi, Arimitsu, Nagisa, Ueda, Yuji, Wakisaka, Sueshige, Suzuki, Tomoko, Suzuki, Noboru
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LanguageEnglish
Published United States Public Library of Science 22.04.2016
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Abstract Gut microbiota compositional alteration may have an association with immune dysfunction in patients with Behcet's disease (BD). We conducted a fecal metagenomic analysis of BD patients. We analyzed fecal microbiota obtained from 12 patients with BD and 12 normal individuals by sequencing of 16S ribosomal RNA gene. We compared the relative abundance of bacterial taxa. Direct comparison of the relative abundance of bacterial taxa demonstrated that the genera Bifidobacterium and Eggerthella increased significantly and the genera Megamonas and Prevotella decreased significantly in BD patients compared with normal individuals. A linear discriminant analysis of bacterial taxa showed that the phylum Actinobacteria, including Bifidobacterium, and the family Lactobacillaceae exhibited larger positive effect sizes than other bacteria in patients with BD. The phylum Firmicutes and the class Clostridia had large effect sizes in normal individuals. There was no significant difference in annotated species numbers (as numbers of operational taxonomic unit; OTU) and bacterial diversity of each sample (alpha diversity) between BD patients and normal individuals. We next assigned each sample to a position using three axes by principal coordinates analysis of the OTU table. The two groups had a significant distance as beta diversity in the 3-axis space. Fecal sIgA concentrations increased significantly in BD patients but did not correlate with any bacterial taxonomic abundance. These data suggest that the compositional changes of gut microbes may be one type of dysbiosis (unfavorable microbiota alteration) in patients with BD. The dysbiosis may have an association with the pathophysiology of BD.
AbstractList Gut microbiota compositional alteration may have an association with immune dysfunction in patients with Behcet’s disease (BD). We conducted a fecal metagenomic analysis of BD patients. We analyzed fecal microbiota obtained from 12 patients with BD and 12 normal individuals by sequencing of 16S ribosomal RNA gene. We compared the relative abundance of bacterial taxa. Direct comparison of the relative abundance of bacterial taxa demonstrated that the genera Bifidobacterium and Eggerthella increased significantly and the genera Megamonas and Prevotella decreased significantly in BD patients compared with normal individuals. A linear discriminant analysis of bacterial taxa showed that the phylum Actinobacteria, including Bifidobacterium, and the family Lactobacillaceae exhibited larger positive effect sizes than other bacteria in patients with BD. The phylum Firmicutes and the class Clostridia had large effect sizes in normal individuals. There was no significant difference in annotated species numbers (as numbers of operational taxonomic unit; OTU) and bacterial diversity of each sample (alpha diversity) between BD patients and normal individuals. We next assigned each sample to a position using three axes by principal coordinates analysis of the OTU table. The two groups had a significant distance as beta diversity in the 3-axis space. Fecal sIgA concentrations increased significantly in BD patients but did not correlate with any bacterial taxonomic abundance. These data suggest that the compositional changes of gut microbes may be one type of dysbiosis (unfavorable microbiota alteration) in patients with BD. The dysbiosis may have an association with the pathophysiology of BD.
Gut microbiota compositional alteration may have an association with immune dysfunction in patients with Behcet’s disease (BD). We conducted a fecal metagenomic analysis of BD patients. We analyzed fecal microbiota obtained from 12 patients with BD and 12 normal individuals by sequencing of 16S ribosomal RNA gene. We compared the relative abundance of bacterial taxa. Direct comparison of the relative abundance of bacterial taxa demonstrated that the genera Bifidobacterium and Eggerthella increased significantly and the genera Megamonas and Prevotella decreased significantly in BD patients compared with normal individuals. A linear discriminant analysis of bacterial taxa showed that the phylum Actinobacteria , including Bifidobacterium , and the family Lactobacillaceae exhibited larger positive effect sizes than other bacteria in patients with BD. The phylum Firmicutes and the class Clostridia had large effect sizes in normal individuals. There was no significant difference in annotated species numbers (as numbers of operational taxonomic unit; OTU) and bacterial diversity of each sample (alpha diversity) between BD patients and normal individuals. We next assigned each sample to a position using three axes by principal coordinates analysis of the OTU table. The two groups had a significant distance as beta diversity in the 3-axis space. Fecal sIgA concentrations increased significantly in BD patients but did not correlate with any bacterial taxonomic abundance. These data suggest that the compositional changes of gut microbes may be one type of dysbiosis (unfavorable microbiota alteration) in patients with BD. The dysbiosis may have an association with the pathophysiology of BD.
Audience Academic
Author Kubota, Takao
Takai, Kenji
Wakisaka, Sueshige
Arimitsu, Nagisa
Takada, Erika
Ueda, Yuji
Suzuki, Noboru
Fujiwara, Naruyoshi
Shimizu, Jun
Suzuki, Tomoko
AuthorAffiliation 1 Department of Immunology and Medicine, St. Marianna University School of Medicine, Kawasaki, Japan
2 Department of Medicine, the Japan Self Defense Forces Central Hospital, Tokyo, Japan
National Cancer Institute, UNITED STATES
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Copyright COPYRIGHT 2016 Public Library of Science
2016 Shimizu et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.
2016 Shimizu et al 2016 Shimizu et al
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– notice: 2016 Shimizu et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.
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content type line 23
Conceived and designed the experiments: JS TK ET KT NS. Performed the experiments: JS TK ET KT. Analyzed the data: JS KT. Contributed reagents/materials/analysis tools: JS TK ET KT NF NA YU SW. Wrote the paper: JS TK KT NF NA TS NS.
Competing Interests: The authors have declared that no competing interests exist.
OpenAccessLink https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4841557/
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PublicationDate 2016-04-22
PublicationDateYYYYMMDD 2016-04-22
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Snippet Gut microbiota compositional alteration may have an association with immune dysfunction in patients with Behcet's disease (BD). We conducted a fecal...
Gut microbiota compositional alteration may have an association with immune dysfunction in patients with Behcet’s disease (BD). We conducted a fecal...
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SubjectTerms Abundance
Actinobacteria
Adolescent
Adult
Aged
Arthritis
Autoimmune diseases
Bacteria
Behcet Syndrome - microbiology
Behcet's syndrome
Bifidobacteria
Bifidobacterium
Bifidobacterium - isolation & purification
Biodiversity
Biology and Life Sciences
Complications and side effects
Computer and Information Sciences
Deoxyribonucleic acid
Discriminant analysis
Disease
DNA
Drug dosages
Dysbacteriosis
Fecal microflora
Feces
Female
Firmicutes
Gene sequencing
Genera
Genomes
Hospitals
Humans
Immunology
Intestinal microflora
Intestines - microbiology
Lactobacillaceae
Male
Medicine
Medicine and Health Sciences
Metabolism
Metabolites
Microbiota
Microbiota (Symbiotic organisms)
Middle Aged
Patients
Physiological aspects
Prevotella
Relative abundance
Ribonucleic acid
RNA
rRNA 16S
Species diversity
Taxa
Vein & artery diseases
Young Adult
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Title Bifidobacteria Abundance-Featured Gut Microbiota Compositional Change in Patients with Behcet's Disease
URI https://www.ncbi.nlm.nih.gov/pubmed/27105322
https://www.proquest.com/docview/1783674830
https://search.proquest.com/docview/1784463249
https://search.proquest.com/docview/1794493689
https://pubmed.ncbi.nlm.nih.gov/PMC4841557
https://doaj.org/article/4391a0bd46b24717a4003b36dad7d278
http://dx.doi.org/10.1371/journal.pone.0153746
Volume 11
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