Allele specific expression of Dof genes responding to hormones and abiotic stresses in sugarcane
Dof transcription factors plant-specific and associates with growth and development in plants. We conducted comprehensive and systematic analyses of Dof transcription factors in sugarcane, and identified 29 SsDof transcription factors in sugarcane genome. Those SsDof genes were divided into five gro...
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Published in | PloS one Vol. 15; no. 1; p. e0227716 |
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Abstract | Dof transcription factors plant-specific and associates with growth and development in plants. We conducted comprehensive and systematic analyses of Dof transcription factors in sugarcane, and identified 29 SsDof transcription factors in sugarcane genome. Those SsDof genes were divided into five groups, with similar gene structures and conserved motifs within the same groups. Segmental duplications are predominant in the evolution of Dof in sugarcane. Cis-element analysis suggested that the functions of SsDofs were involved in growth and development, hormones and abiotic stresses responses in sugarcane. Expression patterns indicated that SsDof7, SsDof23 and SsDof24 had a comparatively high expression in all detected tissues, indicating these genes are crucial in sugarcane growth and development. Moreover, we examined the transcription levels of SsDofs under four plant hormone treatments, SsDof7-3 and SsDof7-4 were down-regulated after ABA treatment, while SsDof7-1 and SsDof7-2 were induced after the same treatment, indicating different alleles may play different roles in response to plant hormones. We also analyzed SsDofs' expression profiling under four abiotic stresses, SsDof5 and SsDof28 significantly responded to these four stresses, indicating they are associate with abiotic stresses responses. Collectively, our results yielded allele specific expression of Dof genes responding to hormones and abiotic stresses in sugarcane, and their cis-elements could be crucial for sugarcane improvement. |
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AbstractList | Dof transcription factors plant-specific and associates with growth and development in plants. We conducted comprehensive and systematic analyses of Dof transcription factors in sugarcane, and identified 29 SsDof transcription factors in sugarcane genome. Those SsDof genes were divided into five groups, with similar gene structures and conserved motifs within the same groups. Segmental duplications are predominant in the evolution of Dof in sugarcane. Cis-element analysis suggested that the functions of SsDofs were involved in growth and development, hormones and abiotic stresses responses in sugarcane. Expression patterns indicated that SsDof7, SsDof23 and SsDof24 had a comparatively high expression in all detected tissues, indicating these genes are crucial in sugarcane growth and development. Moreover, we examined the transcription levels of SsDofs under four plant hormone treatments, SsDof7-3 and SsDof7-4 were down-regulated after ABA treatment, while SsDof7-1 and SsDof7-2 were induced after the same treatment, indicating different alleles may play different roles in response to plant hormones. We also analyzed SsDofs’ expression profiling under four abiotic stresses, SsDof5 and SsDof28 significantly responded to these four stresses, indicating they are associate with abiotic stresses responses. Collectively, our results yielded allele specific expression of Dof genes responding to hormones and abiotic stresses in sugarcane, and their cis-elements could be crucial for sugarcane improvement. Dof transcription factors plant-specific and associates with growth and development in plants. We conducted comprehensive and systematic analyses of Dof transcription factors in sugarcane, and identified 29 SsDof transcription factors in sugarcane genome. Those SsDof genes were divided into five groups, with similar gene structures and conserved motifs within the same groups. Segmental duplications are predominant in the evolution of Dof in sugarcane. Cis -element analysis suggested that the functions of SsDofs were involved in growth and development, hormones and abiotic stresses responses in sugarcane. Expression patterns indicated that SsDof7 , SsDof23 and SsDof24 had a comparatively high expression in all detected tissues, indicating these genes are crucial in sugarcane growth and development. Moreover, we examined the transcription levels of SsDofs under four plant hormone treatments, SsDof7-3 and SsDof7-4 were down-regulated after ABA treatment, while SsDof7-1 and SsDof7-2 were induced after the same treatment, indicating different alleles may play different roles in response to plant hormones. We also analyzed SsDofs’ expression profiling under four abiotic stresses, SsDof5 and SsDof28 significantly responded to these four stresses, indicating they are associate with abiotic stresses responses. Collectively, our results yielded allele specific expression of Dof genes responding to hormones and abiotic stresses in sugarcane, and their cis -elements could be crucial for sugarcane improvement. |
Audience | Academic |
Author | Wang, Yibin Ma, Yaying Cai, Mingxing Li, Zeyun Lin, Zhicong Ming, Ray Lin, Jishan |
AuthorAffiliation | 3 Department of Plant Biology, University of Illinois at Urbana-Champaign, Urbana, IL, United States of America 2 College of Crop Sciences, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China 1 College of Life Sciences, Center for Genomics and Biotechnology, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China United Arab Emirates University, UNITED ARAB EMIRATES |
AuthorAffiliation_xml | – name: 3 Department of Plant Biology, University of Illinois at Urbana-Champaign, Urbana, IL, United States of America – name: 1 College of Life Sciences, Center for Genomics and Biotechnology, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China – name: 2 College of Crop Sciences, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China – name: United Arab Emirates University, UNITED ARAB EMIRATES |
Author_xml | – sequence: 1 givenname: Mingxing surname: Cai fullname: Cai, Mingxing organization: College of Life Sciences, Center for Genomics and Biotechnology, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China – sequence: 2 givenname: Jishan surname: Lin fullname: Lin, Jishan organization: College of Life Sciences, Center for Genomics and Biotechnology, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China – sequence: 3 givenname: Zeyun surname: Li fullname: Li, Zeyun organization: College of Life Sciences, Center for Genomics and Biotechnology, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China – sequence: 4 givenname: Zhicong surname: Lin fullname: Lin, Zhicong organization: College of Crop Sciences, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China – sequence: 5 givenname: Yaying surname: Ma fullname: Ma, Yaying organization: College of Life Sciences, Center for Genomics and Biotechnology, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China – sequence: 6 givenname: Yibin surname: Wang fullname: Wang, Yibin organization: College of Life Sciences, Center for Genomics and Biotechnology, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China – sequence: 7 givenname: Ray orcidid: 0000-0002-9417-5789 surname: Ming fullname: Ming, Ray organization: Department of Plant Biology, University of Illinois at Urbana-Champaign, Urbana, IL, United States of America |
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Notes | USDOE Office of Science (SC) SC0010686 Competing Interests: The authors have declared that no competing interests exist. |
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SubjectTerms | Abiotic stress Alleles Barley BASIC BIOLOGICAL SCIENCES Biology Biology and Life Sciences Biotechnology Criminal investigation Deoxyribonucleic acid DNA DNA binding proteins Engineering and Technology ENVIRONMENTAL SCIENCES Ethanol Gene Duplication - physiology Gene expression Gene Expression Profiling Gene Expression Regulation, Plant - drug effects Gene Expression Regulation, Plant - physiology Genes Genetic aspects Genome, Plant - genetics Genomes Genomics Hormones Laboratories Life sciences Phylogenetics Phylogeny Plant Growth Regulators - pharmacology Plant hormones Plant Proteins - genetics Plant Proteins - metabolism Profiling Proteins Research and Analysis Methods Rice Saccharum - physiology Science & Technology - Other Topics Software Stress, Physiological - genetics Stresses Sugarcane Transcription (Genetics) Transcription factors Transcription Factors - genetics Transcription Factors - metabolism |
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Title | Allele specific expression of Dof genes responding to hormones and abiotic stresses in sugarcane |
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