Rare coding variants in PLCG2, ABI3, and TREM2 implicate microglial-mediated innate immunity in Alzheimer's disease
Sven van der Lee, Julie Williams, Gerard Schellenberg and colleagues identify rare coding variants in PLCG2 , ABI3 and TREM2 associated with Alzheimer's disease. These genes are highly expressed in microglia and provide additional evidence that the microglia-mediated immune response contributes...
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Published in | Nature genetics Vol. 49; no. 9; pp. 1373 - 1384 |
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Main Authors | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
Format | Journal Article |
Language | English |
Published |
New York
Nature Publishing Group US
01.09.2017
Nature Publishing Group |
Subjects | |
Online Access | Get full text |
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Abstract | Sven van der Lee, Julie Williams, Gerard Schellenberg and colleagues identify rare coding variants in
PLCG2
,
ABI3
and
TREM2
associated with Alzheimer's disease. These genes are highly expressed in microglia and provide additional evidence that the microglia-mediated immune response contributes to the development of Alzheimer's disease.
We identified rare coding variants associated with Alzheimer's disease in a three-stage case–control study of 85,133 subjects. In stage 1, we genotyped 34,174 samples using a whole-exome microarray. In stage 2, we tested associated variants (
P
< 1 × 10
−4
) in 35,962 independent samples using
de novo
genotyping and imputed genotypes. In stage 3, we used an additional 14,997 samples to test the most significant stage 2 associations (
P
< 5 × 10
−8
) using imputed genotypes. We observed three new genome-wide significant nonsynonymous variants associated with Alzheimer's disease: a protective variant in
PLCG2
(rs72824905: p.Pro522Arg,
P
= 5.38 × 10
−10
, odds ratio (OR) = 0.68, minor allele frequency (MAF)
cases
= 0.0059, MAF
controls
= 0.0093), a risk variant in
ABI3
(rs616338: p.Ser209Phe,
P
= 4.56 × 10
−10
, OR = 1.43, MAF
cases
= 0.011, MAF
controls
= 0.008), and a new genome-wide significant variant in
TREM2
(rs143332484: p.Arg62His,
P
= 1.55 × 10
−14
, OR = 1.67, MAF
cases
= 0.0143, MAF
controls
= 0.0089), a known susceptibility gene for Alzheimer's disease. These protein-altering changes are in genes highly expressed in microglia and highlight an immune-related protein–protein interaction network enriched for previously identified risk genes in Alzheimer's disease. These genetic findings provide additional evidence that the microglia-mediated innate immune response contributes directly to the development of Alzheimer's disease. |
---|---|
AbstractList | Sven van der Lee, Julie Williams, Gerard Schellenberg and colleagues identify rare coding variants in
PLCG2
,
ABI3
and
TREM2
associated with Alzheimer's disease. These genes are highly expressed in microglia and provide additional evidence that the microglia-mediated immune response contributes to the development of Alzheimer's disease.
We identified rare coding variants associated with Alzheimer's disease in a three-stage case–control study of 85,133 subjects. In stage 1, we genotyped 34,174 samples using a whole-exome microarray. In stage 2, we tested associated variants (
P
< 1 × 10
−4
) in 35,962 independent samples using
de novo
genotyping and imputed genotypes. In stage 3, we used an additional 14,997 samples to test the most significant stage 2 associations (
P
< 5 × 10
−8
) using imputed genotypes. We observed three new genome-wide significant nonsynonymous variants associated with Alzheimer's disease: a protective variant in
PLCG2
(rs72824905: p.Pro522Arg,
P
= 5.38 × 10
−10
, odds ratio (OR) = 0.68, minor allele frequency (MAF)
cases
= 0.0059, MAF
controls
= 0.0093), a risk variant in
ABI3
(rs616338: p.Ser209Phe,
P
= 4.56 × 10
−10
, OR = 1.43, MAF
cases
= 0.011, MAF
controls
= 0.008), and a new genome-wide significant variant in
TREM2
(rs143332484: p.Arg62His,
P
= 1.55 × 10
−14
, OR = 1.67, MAF
cases
= 0.0143, MAF
controls
= 0.0089), a known susceptibility gene for Alzheimer's disease. These protein-altering changes are in genes highly expressed in microglia and highlight an immune-related protein–protein interaction network enriched for previously identified risk genes in Alzheimer's disease. These genetic findings provide additional evidence that the microglia-mediated innate immune response contributes directly to the development of Alzheimer's disease. We identified rare coding variants associated with Alzheimer's disease in a three-stage case-control study of 85,133 subjects. In stage 1, we genotyped 34,174 samples using a whole-exome microarray. In stage 2, we tested associated variants (P < 1 × 10-4) in 35,962 independent samples using de novo genotyping and imputed genotypes. In stage 3, we used an additional 14,997 samples to test the most significant stage 2 associations (P < 5 × 10-8) using imputed genotypes. We observed three new genome-wide significant nonsynonymous variants associated with Alzheimer's disease: a protective variant in PLCG2 (rs72824905: p.Pro522Arg, P = 5.38 × 10-10, odds ratio (OR) = 0.68, minor allele frequency (MAF)cases = 0.0059, MAFcontrols = 0.0093), a risk variant in ABI3 (rs616338: p.Ser209Phe, P = 4.56 × 10-10, OR = 1.43, MAFcases = 0.011, MAFcontrols = 0.008), and a new genome-wide significant variant in TREM2 (rs143332484: p.Arg62His, P = 1.55 × 10-14, OR = 1.67, MAFcases = 0.0143, MAFcontrols = 0.0089), a known susceptibility gene for Alzheimer's disease. These protein-altering changes are in genes highly expressed in microglia and highlight an immune-related protein-protein interaction network enriched for previously identified risk genes in Alzheimer's disease. These genetic findings provide additional evidence that the microglia-mediated innate immune response contributes directly to the development of Alzheimer's disease. We identified rare coding variants associated with Alzheimer's disease in a three-stage case-control study of 85,133 subjects. In stage 1, we genotyped 34,174 samples using a whole-exome microarray. In stage 2, we tested associated variants (P < 1 x 10(-4)) in 35,962 independent samples using de novo genotyping and imputed genotypes. In stage 3, we used an additional 14,997 samples to test the most significant stage 2 associations (P < 5 x 10(-8)) using imputed genotypes. We observed three new genome-wide significant nonsynonymous variants associated with Alzheimer's disease: a protective variant in PLCG2 (rs72824905: p. Pro522Arg, P = 5.38 x 10(-10), odds ratio (OR) = 0.68, minor allele frequency (MAF) cases = 0.0059, MAFcontrols = 0.0093), a risk variant in ABI3 (rs616338: p. Ser209Phe, P = 4.56 x 10-10, OR = 1.43, MAFcases = 0.011, MAFcontrols = 0.008), and a new genome-wide significant variant in TREM2 (rs143332484: p. Arg62His, P = 1.55 x 10(-14), OR = 1.67, MAFcases = 0.0143, MAFcontrols = 0.0089), a known susceptibility gene for Alzheimer's disease. These protein-altering changes are in genes highly expressed in microglia and highlight an immune-related protein-protein interaction network enriched for previously identified risk genes in Alzheimer's disease. These genetic findings provide additional evidence that the microglia-mediated innate immune response contributes directly to the development of Alzheimer's disease. We identified rare coding variants associated with Alzheimer's disease in a three-stage case-control study of 85,133 subjects. In stage 1, we genotyped 34,174 samples using a whole-exome microarray. In stage 2, we tested associated variants (P < 1 × 10 ) in 35,962 independent samples using de novo genotyping and imputed genotypes. In stage 3, we used an additional 14,997 samples to test the most significant stage 2 associations (P < 5 × 10 ) using imputed genotypes. We observed three new genome-wide significant nonsynonymous variants associated with Alzheimer's disease: a protective variant in PLCG2 (rs72824905: p.Pro522Arg, P = 5.38 × 10 , odds ratio (OR) = 0.68, minor allele frequency (MAF) = 0.0059, MAF = 0.0093), a risk variant in ABI3 (rs616338: p.Ser209Phe, P = 4.56 × 10 , OR = 1.43, MAF = 0.011, MAF = 0.008), and a new genome-wide significant variant in TREM2 (rs143332484: p.Arg62His, P = 1.55 × 10 , OR = 1.67, MAF = 0.0143, MAF = 0.0089), a known susceptibility gene for Alzheimer's disease. These protein-altering changes are in genes highly expressed in microglia and highlight an immune-related protein-protein interaction network enriched for previously identified risk genes in Alzheimer's disease. These genetic findings provide additional evidence that the microglia-mediated innate immune response contributes directly to the development of Alzheimer's disease. We identified rare coding variants associated with Alzheimer's disease in a three-stage case-control study of 85,133 subjects. In stage 1, we genotyped 34,174 samples using a whole-exome microarray. In stage 2, we tested associated variants (P < 1 × 10-4) in 35,962 independent samples using de novo genotyping and imputed genotypes. In stage 3, we used an additional 14,997 samples to test the most significant stage 2 associations (P < 5 × 10-8) using imputed genotypes. We observed three new genome-wide significant nonsynonymous variants associated with Alzheimer's disease: a protective variant in PLCG2 (rs72824905: p.Pro522Arg, P = 5.38 × 10-10, odds ratio (OR) = 0.68, minor allele frequency (MAF)cases = 0.0059, MAFcontrols = 0.0093), a risk variant in ABI3 (rs616338: p.Ser209Phe, P = 4.56 × 10-10, OR = 1.43, MAFcases = 0.011, MAFcontrols = 0.008), and a new genome-wide significant variant in TREM2 (rs143332484: p.Arg62His, P = 1.55 × 10-14, OR = 1.67, MAFcases = 0.0143, MAFcontrols = 0.0089), a known susceptibility gene for Alzheimer's disease. These protein-altering changes are in genes highly expressed in microglia and highlight an immune-related protein-protein interaction network enriched for previously identified risk genes in Alzheimer's disease. These genetic findings provide additional evidence that the microglia-mediated innate immune response contributes directly to the development of Alzheimer's disease.We identified rare coding variants associated with Alzheimer's disease in a three-stage case-control study of 85,133 subjects. In stage 1, we genotyped 34,174 samples using a whole-exome microarray. In stage 2, we tested associated variants (P < 1 × 10-4) in 35,962 independent samples using de novo genotyping and imputed genotypes. In stage 3, we used an additional 14,997 samples to test the most significant stage 2 associations (P < 5 × 10-8) using imputed genotypes. We observed three new genome-wide significant nonsynonymous variants associated with Alzheimer's disease: a protective variant in PLCG2 (rs72824905: p.Pro522Arg, P = 5.38 × 10-10, odds ratio (OR) = 0.68, minor allele frequency (MAF)cases = 0.0059, MAFcontrols = 0.0093), a risk variant in ABI3 (rs616338: p.Ser209Phe, P = 4.56 × 10-10, OR = 1.43, MAFcases = 0.011, MAFcontrols = 0.008), and a new genome-wide significant variant in TREM2 (rs143332484: p.Arg62His, P = 1.55 × 10-14, OR = 1.67, MAFcases = 0.0143, MAFcontrols = 0.0089), a known susceptibility gene for Alzheimer's disease. These protein-altering changes are in genes highly expressed in microglia and highlight an immune-related protein-protein interaction network enriched for previously identified risk genes in Alzheimer's disease. These genetic findings provide additional evidence that the microglia-mediated innate immune response contributes directly to the development of Alzheimer's disease. We identified rare coding variants associated with Alzheimer’s disease (AD) in a 3-stage case-control study of 85,133 subjects. In stage 1, 34,174 samples were genotyped using a whole-exome microarray. In stage 2, we tested associated variants ( P <1×10 -4 ) in 35,962 independent samples using de novo genotyping and imputed genotypes. In stage 3, an additional 14,997 samples were used to test the most significant stage 2 associations ( P <5×10 -8 ) using imputed genotypes. We observed 3 novel genome-wide significant (GWS) AD associated non-synonymous variants; a protective variant in PLCG2 (rs72824905/p.P522R, P =5.38×10 -10 , OR=0.68, MAF cases =0.0059, MAF controls =0.0093), a risk variant in ABI3 (rs616338/p.S209F, P =4.56×10 -10 , OR=1.43, MAF cases =0.011, MAF controls =0.008), and a novel GWS variant in TREM2 (rs143332484/p.R62H, P =1.55×10 -14 , OR=1.67, MAF cases =0.0143, MAF controls =0.0089), a known AD susceptibility gene. These protein-coding changes are in genes highly expressed in microglia and highlight an immune-related protein-protein interaction network enriched for previously identified AD risk genes. These genetic findings provide additional evidence that the microglia-mediated innate immune response contributes directly to AD development. |
Audience | Academic |
Author | Ritchie, Karen Murrell, Jill R Buxbaum, Joseph D Boada, Merce Peters, Oliver Duara, Ranjan Albin, Roger L Ciaramella, Antonio Kuzma, Amanda B Fornage, Myriam Green, Robert C Amin, Najaf Jakobsdottir, Johanna Weintraub, Sandra Heun, Reinhard Burns, Jeffrey M Galimberti, Daniela Tarraga, Lluis Baldwin, Clinton T Spina, Salvatore Kilander, Lena Hughes, Joseph T Herms, Stefan Vonsattel, Jean Paul Eiriksdottir, Gudny Faber, Kelley M Kaye, Jeffrey A Bonuccelli, Ubaldo Apostolova, Liana G Royall, Donald R Masullo, Carlo Vandenberghe, Rik Kunkle, Brian W Reiman, Eric M Proitsi, Petra Carrell, David Rosenberg, Roger N Hakonarson, Hakon Moebus, Susanne Boerwinkle, Eric Beecham, Gary W Urbano, Maria Fenoglio, Chiara Lin, Honghuang Hampel, Harald Whitehead, Patrice Bowen, James D Corcoran, Chris Burgess, Jeremy D Lupton, Michelle K Smith, Albert V Yu, Lei Launer, Lenore J Burke, James R Paulson, Henry L Schmidt, Reinhold Hiltunen, Mikko Levy, Daniel Serpente, Maria Riemenschneider, Matthias Leber, Markus Sacchinelli, Eleonora McGuinness, Bernadette White, Cha |
AuthorAffiliation | 59 National Heart, Lung, and Blood Institute, Bethesda, MD, USA 89 Office of Strategy and Measurement, University of North Texas Health Science Center, Fort Worth, Texas, USA 116 Regional Neurogenetic Centre (CRN), ASP Catanzaro, Lamezia Terme, Italy 113 Arizona Alzheimer’s Consortium, Phoenix, Arizona, USA 23 Taub Institute on Alzheimer’s Disease and the Aging Brain, Department of Neurology, Columbia University, New York, New York, USA 25 Department of Neurology, Columbia University, New York, New York, USA 96 Department of Human Genetics, University of Pittsburgh, Pittsburgh, Pennsylvania, USA 30 German Center for Neurodegenerative Diseases (DZNE), 53127 Bonn, Germany 32 Department of Biostatistics, Boston University School of Public Health, Boston, MA, USA 154 Neurogenetics Laboratory, Division of Neurosciences, Centre for Applied Medical Research, University of Navarra School of Medicine, Pamplona, Spain 49 Neurodegenerative Disease Unit, Department of Basic Medicine, Neuroscience, and Sense |
AuthorAffiliation_xml | – name: 84 Institute of Molecular Biology and Biochemistry, Medical University Graz, Austria – name: 24 Gertrude H. Sergievsky Center, Columbia University, New York, New York, USA – name: 108 Human Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, USA – name: 131 Department of Psychiatry, Charité University Medicine, Berlin, Germany – name: 143 Division of Clinical Neurosciences, School of Medicine, University of Southampton, Southampton, UK – name: 112 Neurogenomics Division, Translational Genomics Research Institute, Phoenix, Arizona, USA – name: 111 Netherlands Consortium on Health Aging and National Genomics Initiative, Leiden, The Netherlands – name: 155 Department of Neurology, Complejo Asistencial Universitario de Palencia, Spain – name: 13 Department of Genomics, Life & Brain Center, University of Bonn, 53127, Bonn, Germany – name: 150 Memory Research and Resources Center, CMRR of Montpellier, Department of Neurology, Hospital Gui de Chauliac, Montpellier, France – name: 75 Department of Neurology, Johns Hopkins University, Baltimore, Maryland, USA – name: 64 Department of Public Health/Geriatrics, Uppsala University, Uppsala, Sweden – name: 90 Department of Psychiatry, University of Pittsburgh, Pittsburgh, PA – name: 9 CEA / Institut de Génomique, Centre National de Génotypage, F-91057 Evry, France – name: 144 Department of Psychiatry, University of Oxford, Oxford, UK – name: 118 Departments of Psychiatry, Medicine, Family & Community Medicine, South Texas Veterans Health Administration Geriatric Research Education & Clinical Center (GRECC), UT Health Science Center at San Antonio, San Antonio, Texas, USA – name: 83 Department of Neurology, Catholic University of Rome, Rome, Italy – name: 103 Centre for Public Health, University of Iceland, Reykjavik, Iceland – name: 137 Department of Medical Sciences, Institute of Biomedicine iBiMED, University of Aveiro, Aveiro, Portugal – name: 16 Department of Pathology and Laboratory Medicine, University of Pennsylvania Perelman School of Medicine, Philadelphia, Pennsylvania, USA – name: 52 Geriatric Medicine-Memory Unit and Rare Disease Centre, University of Bari Aldo Moro, Bari, Italy – name: 132 NEUROFARBA (Department of Neuroscience, Psychology, Drug Research and Child Health), University of Florence, Florence, Italy – name: 15 Framingham Heart Study, Framingham, MA, USA – name: 22 School of Public Health, Human Genetics Center, University of Texas Health Science Center at Houston, Houston, TX, USA – name: 55 Department of Neurology, Rouen University Hospital, Rouen, France – name: 119 Institute for Stroke and Dementia Research, Klinikum der Universität München, Munich, Germany – name: 87 Department of Neurology, University of Washington, Seattle, WA, USA – name: 54 Section of Gerontology and Geriatrics, Department of Medicine, University of Perugia, Perugia, Italy – name: 72 Department of Primary Medical Care, University Medical Centre Hamburg-Eppendorf, 20246 Hamburg, Germany – name: 33 Faculty of Medicine, University of Iceland, Reykjavik, Iceland – name: 6 University Lille, U1167 – Excellence Laboratory LabEx DISTALZ, F-59000 Lille – name: 147 Karolinska Institutet, Department of Neurobiology, Care Sciences and Society, KIADRC, Novum Floor 5, S14186 Stockholm, Sweden – name: 12 Institute of Human Genetics, University of Bonn, Bonn, Germany – name: 35 School of Biotechnology, Dublin City University, Dublin 9, Ireland – name: 21 Division of Medical Genetics, University Hospital and Department of Biomedicine, University of Basel, CH-4058, Basel, Switzerland – name: 142 Memory Unit, Neurology Department and Sant Pau Biomedical Research Institute, Hospital de la Santa Creu i Sant Pau, Autonomous University Barcelona, Barcelona, Spain – name: 69 Centre Hospitalier Universitaire de Lille, Epidemiology and Public Health Department, F-59000 Lille, France – name: 40 Departments of Medicine, Geriatrics, Gerontology and Neurology, University of Mississippi Medical Center, Jackson, MS, USA – name: 107 Molecular Genetics Lab-Hospital, University of Central Asturias, Oviedo, Spain, 33011 Oviedo, Spain – name: 45 Department of Geriatric Medicine, Karolinska University Hospital Huddinge, S-14186 Stockholm – name: 57 IdiPAZ, Instituto de Investigación, Sanitaria la Paz, Spain – name: 10 Cardiovascular Health Research Unit, Department of Medicine, University of Washington, Seattle, WA, USA – name: 153 Memory Research and Resources Center, CMRR de Bordeaux, Bordeaux, France – name: 135 Institute of Public Health, University of Cambridge, Cambridge, UK – name: 126 Department of Psychiatry and Behavioral Sciences, University of Washington School of Medicine, Seattle, Washington, USA – name: 51 Department of Neuroscience, Mayo Clinic, Jacksonville, Florida, USA – name: 123 Cambridge Institute for Medical Research, University of Cambridge, UK – name: 11 Dr. John T. Macdonald Foundation, Department of Human Genetics, University of Miami, Miami, Florida, USA – name: 146 Florida Alzheimer’s Disease Research Center, Gainesville, FL, USA – name: 27 Department of Neurology, Kuopio University Hospital, FIN-70211, Kuopio, Finland – name: 128 PharmaTherapeutics Clinical Research, Pfizer Worldwide Research and Development, Cambridge, Massachusetts, USA – name: 39 Brown Foundation Institute of Molecular Medicine, The University of Texas Health Sciences Center at Houston, TX, USA – name: 134 Department of Psychiatry and Psychotherapy, University Hospital, Saarland, Germany – name: 8 The John P. Hussman Institute for Human Genomics, University of Miami, Miami, Florida, USA – name: 19 Research Center and Memory Clinic of Fundació ACE, Institut Català de Neurociències Aplicades, Barcelona, Spain – name: 154 Neurogenetics Laboratory, Division of Neurosciences, Centre for Applied Medical Research, University of Navarra School of Medicine, Pamplona, Spain – name: 48 Department of Medicine, University of Washington, Seattle, Washington, USA – name: 159 Department of Epidemiology and Biostatistics, Case Western Reserve University, Cleveland, OH, USA – name: 68 Laboratory of Epidemiology and Population Sciences, National Institute on Aging, Bethesda, MD, USA – name: 95 University of Pittsburgh, Alzheimer’s Disease Research Center, Pittsburgh, Pennsylvania, USA – name: 102 Department of Family Medicine, University of Washington, Seattle, WA, USA – name: 5 Institut Pasteur de Lille, F-59000 Lille, France – name: 38 Department of Immunology, Hospital Universitario Dr. Negrin, Las Palmas de Gran Canaria, Spain – name: 86 Experimental Neuropsychiatry Laboratory, IRCCS Santa Lucia Foundation, Department of Clinical and Behavioural Neurology, Rome, Italy – name: 23 Taub Institute on Alzheimer’s Disease and the Aging Brain, Department of Neurology, Columbia University, New York, New York, USA – name: 47 Institute of Genetics, Queens Medical Centre, University of Nottingham, Nottingham, UK – name: 36 Section of Neuroscience and Clinical Pharmacology, Department of Biomedical Sciences, University of Cagliari, Cagliari, Italy – name: 41 Centre hospitalier du Rouvray. 76300 Sotteville les Rouen, France – name: 30 German Center for Neurodegenerative Diseases (DZNE), 53127 Bonn, Germany – name: 42 Inserm U1079, Rouen University, IRIB, Normandy University, Rouen, France – name: 141 3rd Department of Neurology, Medical School, Aristotle University of Thessaloniki, Thessaloniki, Greece – name: 81 Department of Epidemiology, Harvard School of Public Health, Boston, Massachusetts, USA – name: 99 Department of Neurology, Albert Einstein College of Medicine, New York, New York, USA – name: 156 Center for Applied Genomics, Children’s Hospital of Philadelphia, Philadelphia, Pennsylvania, USA – name: 80 Department of Neurology, Clinical Division of Neurogeriatrics, Medical University Graz, Austria – name: 151 INSERM U1061, La Colombière Hospital, Montpellier, France – name: 121 Department of Psychiatry, Mount Sinai School of Medicine, New York, New York, USA – name: 114 Banner Alzheimer’s Institute, Phoenix, Arizona, USA – name: 82 Department of Psychiatry, Massachusetts General Hospital/Harvard Medical School, Boston, Massachusetts, USA – name: 28 Program in Translational NeuroPsychiatric Genomics, Institute for the Neurosciences, Departments of Neurology and Psychiatry, Brigham and Women’s Hospital, Boston, MA – name: 70 Inserm UMR-S1171, CNR-Maj, F-59000 Lille, France – name: 34 Institute for Systems Biology, Seattle, WA, USA – name: 98a Department of Neuroscience, Mount Sinai School of Medicine, New York, New York, USA – name: 152 Montpellier University, Montpellier, France – name: 7 Icelandic Heart Association, Kopavogur, Iceland – name: 3 Department of Biostatistics and Epidemiology/Center for Clinical Epidemiology and Biostatistics, University of Pennsylvania Perelman School of Medicine, Philadelphia, Pennsylvania, USA – name: 50 Centre for Public Health, School of Medicine, Dentistry and Biomedical Sciences, Queens University, Belfast, UK – name: 74 Department of Psychiatry and Psychotherapy, University of Cologne, 50937 Cologne, Germany – name: 78 National Alzheimer’s Coordinating Center, University of Washington, Seattle, Washington, USA – name: 66 Sorbonne Universités, Université Pierre et Marie Curie, Paris, France – name: 85 Alzheimer’s Disease and Memory Disorders Center, Baylor College of Medicine, Houston, Texas, USA – name: 25 Department of Neurology, Columbia University, New York, New York, USA – name: 88 Department of Epidemiology, University of Washington, Seattle, WA, USA – name: 94 Department of Surgery, University of Texas Southwestern Medical Center, Dallas, Texas, USA – name: 46 Aging Reasearch Center, Department of Neurobiology, Care Sciences and Society, Karolinska Institutet and Stockholm University, Stockholm, Sweden – name: 26 Institute of Biom, University of Eastern Finland, FIN-70211, Kuopio, Finland – name: 1 Institute of Psychological Medicine and Clinical Neurosciences, MRC Centre for Neuropsychiatric Genetics and Genomics, Cardiff University, UK – name: 113 Arizona Alzheimer’s Consortium, Phoenix, Arizona, USA – name: 100 Utah State University, Logan, Utah, USA – name: 67 Institut de la Memoire et de la Maladie d’Alzheimer (IM2A) & Institut du Cerveau et de la Moelle épinière (ICM), Département de Neurologie, Hôpital de la Pitié-Salpêtrière, Paris, France |
Author_xml | – sequence: 5 givenname: Nandini orcidid: 0000-0002-6944-748X surname: Badarinarayan fullname: Badarinarayan, Nandini organization: Institute of Psychological Medicine and Clinical Neurosciences, MRC Centre for Neuropsychiatric Genetics and Genomics, Cardiff University – sequence: 10 givenname: Joshua C surname: Bis fullname: Bis, Joshua C organization: Department of Medicine, Cardiovascular Health Research Unit, University of Washington – sequence: 13 givenname: Stefanie surname: Heilmann-Heimbach fullname: Heilmann-Heimbach, Stefanie organization: Institute of Human Genetics, University of Bonn, Department of Genomics, Life & Brain Center, University of Bonn – sequence: 16 givenname: Kristel surname: Sleegers fullname: Sleegers, Kristel organization: Department of Molecular Genetics, Neurodegenerative Brain Diseases Group, VIB, Institute Born-Bunge, University of Antwerp – sequence: 17 givenname: Maria surname: Vronskaya fullname: Vronskaya, Maria organization: Institute of Psychological Medicine and Clinical Neurosciences, MRC Centre for Neuropsychiatric Genetics and Genomics, Cardiff University – sequence: 26 givenname: Charles C surname: White fullname: White, Charles C organization: Departments of Neurology and Psychiatry, Program in Translational NeuroPsychiatric Genomics, Institute for the Neurosciences, Brigham and Women's Hospital – sequence: 27 givenname: Kara L surname: Hamilton-Nelson fullname: Hamilton-Nelson, Kara L organization: John P. Hussman Institute for Human Genomics, University of Miami – sequence: 30 givenname: Seung-Hoan surname: Choi fullname: Choi, Seung-Hoan organization: Boston University School of Medicine, Department of Biostatistics, Boston University School of Public Health – sequence: 37 givenname: Andreas J surname: Forstner fullname: Forstner, Andreas J organization: Institute of Human Genetics, University of Bonn, Department of Genomics, Life & Brain Center, University of Bonn – sequence: 40 givenname: Delphine surname: Bacq fullname: Bacq, Delphine organization: CEA/Institut de Génomique, Centre National de Génotypage – sequence: 46 givenname: Jennifer A orcidid: 0000-0001-8509-148X surname: Brody fullname: Brody, Jennifer A organization: Department of Medicine, Cardiovascular Health Research Unit, University of Washington – sequence: 50 givenname: Frank J orcidid: 0000-0003-2226-4050 surname: Wolters fullname: Wolters, Frank J organization: Department of Epidemiology, Erasmus Medical Center – sequence: 54 givenname: Myriam surname: Fornage fullname: Fornage, Myriam organization: Brown Foundation Institute of Molecular Medicine, University of Texas Health Sciences Center at Houston – sequence: 57 givenname: Elisa surname: Majounie fullname: Majounie, Elisa organization: Institute of Psychological Medicine and Clinical Neurosciences, MRC Centre for Neuropsychiatric Genetics and Genomics, Cardiff University – sequence: 60 givenname: David surname: Wallon fullname: Wallon, David organization: Centre Hospitalier du Rouvray, Sotteville les, INSERM U1079, Rouen University, IRIB, Normandy University – sequence: 61 givenname: Michelle K orcidid: 0000-0002-7274-7299 surname: Lupton fullname: Lupton, Michelle K organization: Department of Basic and Clinical Neuroscience, Institute of Psychiatry, Psychology and Neuroscience, King's College London, Genetic Epidemiology, QIMR Berghofer Medical Research Institute – sequence: 66 givenname: Xueqiu surname: Jian fullname: Jian, Xueqiu organization: Brown Foundation Institute of Molecular Medicine, University of Texas Health Sciences Center at Houston – sequence: 67 givenname: Shubhabrata surname: Mukherjee fullname: Mukherjee, Shubhabrata organization: Department of Medicine, University of Washington – sequence: 76 givenname: Vincenzo surname: Solfrizzi fullname: Solfrizzi, Vincenzo organization: Geriatric Medicine–Memory Unit and Rare Disease Centre, University of Bari Aldo Moro – sequence: 79 givenname: Mariet surname: Allen fullname: Allen, Mariet organization: Department of Neuroscience, Mayo Clinic, Jacksonville – sequence: 82 givenname: L Adrienne surname: Cupples fullname: Cupples, L Adrienne organization: Framingham Heart Study, Department of Biostatistics, Boston University School of Public Health – sequence: 89 givenname: Ina surname: Giegling fullname: Giegling, Ina organization: Department of Psychiatry, Martin Luther University Halle-Wittenberg – sequence: 91 givenname: Vilmantas orcidid: 0000-0003-3423-2021 surname: Giedraitis fullname: Giedraitis, Vilmantas organization: Department of Public Health/Geriatrics, Uppsala University – sequence: 94 givenname: Xue surname: Wang fullname: Wang, Xue organization: Department of Neuroscience, Mayo Clinic, Jacksonville – sequence: 96 givenname: Patrizia surname: Mecocci fullname: Mecocci, Patrizia organization: Department of Medicine, Section of Gerontology and Geriatrics, University of Perugia – sequence: 97 givenname: Gudny surname: Eiriksdottir fullname: Eiriksdottir, Gudny organization: Icelandic Heart Association – sequence: 107 givenname: Yuning orcidid: 0000-0002-7358-7055 surname: Chen fullname: Chen, Yuning organization: Department of Biostatistics, Boston University School of Public Health – sequence: 123 givenname: Matthew P surname: Frosch fullname: Frosch, Matthew P organization: C.S. Kubik Laboratory for Neuropathology, Massachusetts General Hospital – sequence: 127 givenname: Ryan M surname: Huebinger fullname: Huebinger, Ryan M organization: Department of Surgery, University of Texas Southwestern Medical Center – sequence: 131 givenname: John surname: Morris fullname: Morris, John organization: Department of Psychiatry, Washington University School of Medicine, Hope Center Program on Protein Aggregation and Neurodegeneration, Washington University School of Medicine – sequence: 132 givenname: Oscar surname: Sotolongo-Grau fullname: Sotolongo-Grau, Oscar organization: Research Center and Memory Clinic of Fundació ACE, Institut Català de Neurociències Aplicades – sequence: 133 givenname: Mindy J surname: Katz fullname: Katz, Mindy J organization: Department of Neurology, Albert Einstein College of Medicine – sequence: 136 givenname: Amy surname: Braddel fullname: Braddel, Amy organization: Institute of Psychological Medicine and Clinical Neurosciences, MRC Centre for Neuropsychiatric Genetics and Genomics, Cardiff University – sequence: 141 givenname: Jade surname: Chapman fullname: Chapman, Jade organization: Institute of Psychological Medicine and Clinical Neurosciences, MRC Centre for Neuropsychiatric Genetics and Genomics, Cardiff University – sequence: 144 givenname: Matt surname: Hill fullname: Hill, Matt organization: Institute of Psychological Medicine and Clinical Neurosciences, MRC Centre for Neuropsychiatric Genetics and Genomics, Cardiff University – sequence: 147 givenname: Bruno surname: Vellas fullname: Vellas, Bruno organization: INSERM U558, University of Toulouse – sequence: 148 givenname: Hilkka surname: Soininen fullname: Soininen, Hilkka organization: Department of Neurology, Kuopio University Hospital – sequence: 153 givenname: Joseph T surname: Hughes fullname: Hughes, Joseph T organization: Department of Basic and Clinical Neuroscience, Institute of Psychiatry, Psychology and Neuroscience, King's College London – sequence: 165 givenname: Manuel surname: Mayhaus fullname: Mayhaus, Manuel organization: Department of Psychiatry and Psychotherapy, University Hospital – sequence: 173 givenname: Raffaele Giovanni surname: Maletta fullname: Maletta, Raffaele Giovanni organization: Regional Neurogenetic Centre (CRN), ASP Catanzaro – sequence: 174 givenname: David surname: Carrell fullname: Carrell, David organization: Department of Psychiatry and Behavioral Sciences, University of Washington School of Medicine – sequence: 178 givenname: Alberto surname: Pilotto fullname: Pilotto, Alberto organization: Department of Medical Sciences, Geriatric Unit and Gerontology–Geriatrics Research Laboratory, IRCCS Casa Sollievo della Sofferenza – sequence: 187 givenname: Nick C surname: Fox fullname: Fox, Nick C organization: Department of Molecular Neuroscience, UCL, Institute of Neurology – sequence: 192 givenname: Steven E surname: Arnold fullname: Arnold, Steven E organization: Department of Psychiatry, University of Pennsylvania Perelman School of Medicine – sequence: 199 givenname: James T surname: Becker fullname: Becker, James T organization: Departments of Psychiatry, Neurology, and Psychology, University of Pittsburgh School of Medicine – sequence: 205 givenname: James R surname: Burke fullname: Burke, James R organization: Department of Medicine, Duke University – sequence: 211 givenname: Cynthia M surname: Carlsson fullname: Carlsson, Cynthia M organization: Department of Medicine, University of Wisconsin, Wisconsin Alzheimer's Disease Research Center – sequence: 217 givenname: David G surname: Clark fullname: Clark, David G organization: Department of Neurology, Medical University of South Carolina, Department of Neurology, Ralph H. Johnson VA Medical Center – sequence: 218 givenname: David H surname: Cribbs fullname: Cribbs, David H organization: Department of Neurology, University of California, Irvine – sequence: 222 givenname: Ranjan surname: Duara fullname: Duara, Ranjan organization: Wien Center for Alzheimer's Disease and Memory Disorders, Mount Sinai Medical Center – sequence: 223 givenname: Denis A surname: Evans fullname: Evans, Denis A organization: Department of Internal Medicine, Rush Institute for Healthy Aging, Rush University Medical Center – sequence: 225 givenname: Kenneth B surname: Fallon fullname: Fallon, Kenneth B organization: Department of Pathology, University of Alabama at Birmingham – sequence: 227 givenname: Martin R surname: Farlow fullname: Farlow, Martin R organization: Department of Neurology, Indiana University – sequence: 229 givenname: Tatiana M surname: Foroud fullname: Foroud, Tatiana M organization: Department of Medical and Molecular Genetics, Indiana University – sequence: 230 givenname: Douglas R surname: Galasko fullname: Galasko, Douglas R organization: Department of Neurosciences, University of California – sequence: 245 givenname: Lee-Way surname: Jin fullname: Jin, Lee-Way organization: Department of Pathology and Laboratory Medicine, University of California, Davis – sequence: 253 givenname: James J surname: Lah fullname: Lah, James J organization: Department of Neurology, Emory University – sequence: 255 givenname: Allan I surname: Levey fullname: Levey, Allan I organization: Department of Neurology, Emory University – sequence: 257 givenname: Andrew P surname: Lieberman fullname: Lieberman, Andrew P organization: Department of Pathology, University of Michigan – sequence: 267 givenname: Ann C surname: McKee fullname: McKee, Ann C organization: Department of Neurology, Boston University, Department of Pathology, Boston University – sequence: 272 givenname: John C surname: Morris fullname: Morris, John C organization: Department of Pathology and Immunology, Washington University, Department of Neurology, Washington University – sequence: 279 givenname: Henry L surname: Paulson fullname: Paulson, Henry L organization: Department of Neurology, University of Michigan, Michigan Alzheimer Disease Center – sequence: 281 givenname: Elaine surname: Peskind fullname: Peskind, Elaine organization: Department of Psychiatry and Behavioral Sciences, University of Washington School of Medicine – sequence: 285 givenname: Joseph F surname: Quinn fullname: Quinn, Joseph F organization: Department of Neurology, Oregon Health & Science University, Department of Neurology, Portland Veterans Affairs Medical Center – sequence: 287 givenname: Murray surname: Raskind fullname: Raskind, Murray organization: Department of Psychiatry and Behavioral Sciences, University of Washington School of Medicine – sequence: 302 givenname: Salvatore surname: Spina fullname: Spina, Salvatore organization: Department of Pathology and Laboratory Medicine, Indiana University – sequence: 304 givenname: Russell H surname: Swerdlow fullname: Swerdlow, Russell H organization: University of Kansas Alzheimer's Disease Center, University of Kansas Medical Center – sequence: 310 givenname: Linda J surname: Van Eldik fullname: Van Eldik, Linda J organization: Department of Anatomy and Neurobiology, Sanders-Brown Center on Aging, University of Kentucky – sequence: 311 givenname: Harry V surname: Vinters fullname: Vinters, Harry V organization: Department of Neurology, University of California, Los Angeles, Department of Pathology and Laboratory Medicine, University of California, Los Angeles – sequence: 312 givenname: Jean Paul surname: Vonsattel fullname: Vonsattel, Jean Paul organization: Department of Pathology, Taub Institute on Alzheimer's Disease and the Aging Brain, Columbia University – sequence: 327 givenname: Peter P surname: De Deyn fullname: De Deyn, Peter P organization: Institute Born-Bunge, University of Antwerp, Department of Neurology and 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– sequence: 349 givenname: JoAnn surname: Tschanz fullname: Tschanz, JoAnn organization: Department of Mathematics and Statistics, Utah State University – sequence: 350 givenname: Annette L surname: Fitzpatrick fullname: Fitzpatrick, Annette L organization: Department of Epidemiology, University of Washington, Department of Family Medicine, University of Washington – sequence: 351 givenname: Walter A surname: Kukull fullname: Kukull, Walter A organization: Department of Epidemiology, University of Washington – sequence: 358 givenname: María J orcidid: 0000-0002-6477-1117 surname: Bullido fullname: Bullido, María J organization: Instituto de Investigación Sanitaria Hospital la Paz (IdiPAZ), Centro de Investigación Biomédica en Red de Enfermedades Neurodegenerativas (CIBERNED), Instituto de Salud Carlos III, Centro de Biología Molecular Severo Ochoa (CSIC-UAM) – sequence: 361 givenname: Eliecer surname: Coto fullname: Coto, Eliecer organization: Molecular Genetics Laboratory-Hospital, University of Central Asturias – sequence: 366 givenname: Eric M surname: Reiman fullname: Reiman, Eric M organization: Neurogenomics Division, Translational Genomics Research Institute, Arizona Alzheimer's Consortium, Banner Alzheimer's Institute, Department of Psychiatry, University of Arizona – sequence: 367 givenname: Maura surname: Gallo fullname: Gallo, Maura organization: Regional Neurogenetic Centre (CRN), ASP Catanzaro – sequence: 376 givenname: Elio surname: Scarpini fullname: Scarpini, Elio organization: Department of Pathophysiology and Transplantation, University of Milan, Fondazione Ca' Granda, IRCCS Ospedale Policlinico – sequence: 377 givenname: Debby W surname: Tsuang fullname: Tsuang, Debby W organization: Department of Psychiatry and Behavioral Sciences, University of Washington School of Medicine, VA Puget Sound Health Care System/GRECC – sequence: 379 givenname: Ubaldo surname: Bonuccelli fullname: Bonuccelli, Ubaldo organization: Department of Experimental and Clinical Medicine, Neurological Institute, University of Pisa – sequence: 389 givenname: David C orcidid: 0000-0001-5002-5263 surname: Rubinsztein fullname: Rubinsztein, David C organization: Cambridge Institute for Medical Research, University of Cambridge – sequence: 390 givenname: Jose surname: Bras fullname: Bras, Jose organization: Department of Molecular Neuroscience, UCL, Institute of Neurology, Department of Medical Sciences, Institute of Biomedicine (iBiMED), University of Aveiro – sequence: 391 givenname: Rita surname: Guerreiro fullname: Guerreiro, Rita organization: Department of Molecular Neuroscience, UCL, Institute of Neurology, Department of Medical Sciences, Institute of Biomedicine (iBiMED), University of Aveiro – sequence: 399 givenname: Simon surname: Lovestone fullname: Lovestone, Simon organization: Department of Psychiatry, University of Oxford – sequence: 401 givenname: Michael J surname: Owen fullname: Owen, Michael J organization: Institute of Psychological Medicine and Clinical Neurosciences, MRC Centre for Neuropsychiatric Genetics and Genomics, Cardiff University – sequence: 407 givenname: Carlos surname: Cruchaga fullname: Cruchaga, Carlos organization: Department of Psychiatry, Washington University School of Medicine, Hope Center Program on Protein Aggregation and Neurodegeneration, Washington University School of Medicine – sequence: 410 givenname: John surname: Powell fullname: Powell, John organization: Department of Basic and Clinical Neuroscience, Institute of Psychiatry, Psychology and Neuroscience, King's College London – sequence: 413 givenname: Philip L orcidid: 0000-0002-8057-2505 surname: De Jager fullname: De Jager, Philip L organization: Department of Neurology, Center for Translational and Systems Neuroimmunology, Columbia University Medical Center – sequence: 422 givenname: Dan surname: Rujescu fullname: Rujescu, Dan organization: Department of Psychiatry, Martin Luther University Halle-Wittenberg – sequence: 426 givenname: Sara surname: Ortega-Cubero fullname: Ortega-Cubero, Sara organization: Centro de Investigación Biomédica en Red de Enfermedades Neurodegenerativas (CIBERNED), Instituto de Salud Carlos III, Division of Neurosciences, Neurogenetics Laboratory, Centre for Applied Medical Research, University of Navarra School of Medicine, Department of Neurology, Complejo Asistencial Universitario de Palencia – sequence: 433 givenname: M Arfan orcidid: 0000-0003-0372-8585 surname: Ikram fullname: Ikram, M Arfan organization: Department of Epidemiology, Erasmus Medical Center, Department of Neurology, Erasmus MC University Medical Center – sequence: 439 givenname: Richard surname: Mayeux fullname: Mayeux, Richard organization: Department of Neurology, Taub Institute on Alzheimer's Disease and the Aging Brain, Columbia University, Gertrude H. Sergievsky Center, Columbia University, Department of Neurology, Columbia University – sequence: 440 givenname: Jean-François surname: Deleuze fullname: Deleuze, Jean-François organization: CEA/Institut de Génomique, Centre National de Génotypage – sequence: 441 givenname: Najaf surname: Amin fullname: Amin, Najaf organization: Department of Epidemiology, Erasmus Medical Center – sequence: 444 givenname: Philippe orcidid: 0000-0001-9088-234X surname: Amouyel fullname: Amouyel, Philippe organization: INSERM, U1167, RID-AGE–Risk Factors and Molecular Determinants of Aging-Related Diseases, Institut Pasteur de Lille, University Lille, U1167–Excellence Laboratory LabEx DISTALZ, Epidemiology and Public Health Department, Centre Hospitalier Universitaire de Lille – sequence: 445 givenname: Cornelia M surname: van Duijn fullname: van Duijn, Cornelia M organization: Department of Epidemiology, Erasmus Medical Center |
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Snippet | Sven van der Lee, Julie Williams, Gerard Schellenberg and colleagues identify rare coding variants in
PLCG2
,
ABI3
and
TREM2
associated with Alzheimer's... We identified rare coding variants associated with Alzheimer's disease in a three-stage case-control study of 85,133 subjects. In stage 1, we genotyped 34,174... We identified rare coding variants associated with Alzheimer’s disease (AD) in a 3-stage case-control study of 85,133 subjects. In stage 1, 34,174 samples were... |
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StartPage | 1373 |
SubjectTerms | 45/43 631/208/205/2138 692/699/375/365/1283 Adaptor Proteins, Signal Transducing - genetics Agriculture Alzheimer Disease - genetics Alzheimer's disease Amino Acid Sequence Animal Genetics and Genomics Bioinformatics Biomedicine Cancer Research Case-Control Studies Consortia Development and progression Disease control DNA methylation DNA microarrays Exome - genetics Gene Expression Profiling Gene Frequency Gene Function Genes Genetic aspects Genetic Predisposition to Disease - genetics Genetic variation Genomes Genomics Genotype Genotypes Genotyping Human Genetics Humans Immune response Immune system Immunity Immunity (Disease) Immunity, Innate - genetics Innate immunity letter Life Sciences Linkage Disequilibrium Membrane Glycoproteins - genetics Microglia Microglia - metabolism Neurodegenerative diseases Neurons and Cognition Odds Ratio Phospholipase C gamma - genetics Physiological aspects Polymorphism, Single Nucleotide Protein interaction Protein Interaction Maps - genetics Proteins Receptors, Immunologic - genetics Sequence Homology, Amino Acid Studies |
Title | Rare coding variants in PLCG2, ABI3, and TREM2 implicate microglial-mediated innate immunity in Alzheimer's disease |
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