Skin microbiome of coral reef fish is highly variable and driven by host phylogeny and diet

The surface of marine animals is covered by abundant and diversified microbial communities, which have major roles for the health of their host. While such microbiomes have been deeply examined in marine invertebrates such as corals and sponges, the microbiomes living on marine vertebrates have rece...

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Published inMicrobiome Vol. 6; no. 1; pp. 147 - 14
Main Authors Chiarello, Marlène, Auguet, Jean-Christophe, Bettarel, Yvan, Bouvier, Corinne, Claverie, Thomas, Graham, Nicholas A. J., Rieuvilleneuve, Fabien, Sucré, Elliot, Bouvier, Thierry, Villéger, Sébastien
Format Journal Article
LanguageEnglish
Published England BioMed Central Ltd 24.08.2018
BioMed Central
BMC
Subjects
Analysis
Animals
Bacteria
Biodiversity
Coral reef ecosystems
Coral reefs
Corals
Environmental Sciences
Fish
Genetic aspects
Geobiology
Immune system
Interspecific
Life Sciences
Marine organisms
Microbiomes
Microbiota
Phylogenetic diversity
Phylogenetic signal
Phylogenetics
Phylogeny
Phylosymbiosis
Skin
Software
Species
Teleost
Tropical
Vertebrates
Zebrafish
Teleost
Microbiota
Tropical
Phylogenetic signal
Phylogenetic diversity
Phylosymbiosis
Online AccessGet full text
ISSN2049-2618
2049-2618
DOI10.1186/s40168-018-0530-4

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Abstract The surface of marine animals is covered by abundant and diversified microbial communities, which have major roles for the health of their host. While such microbiomes have been deeply examined in marine invertebrates such as corals and sponges, the microbiomes living on marine vertebrates have received less attention. Specifically, the diversity of these microbiomes, their variability among species, and their drivers are still mostly unknown, especially among the fish species living on coral reefs that contribute to key ecosystem services while they are increasingly affected by human activities. Here, we investigated these knowledge gaps analyzing the skin microbiome of 138 fish individuals belonging to 44 coral reef fish species living in the same area. Prokaryotic communities living on the skin of coral reef fishes are highly diverse, with on average more than 600 OTUs per fish, and differ from planktonic microbes. Skin microbiomes varied between fish individual and species, and interspecific differences were slightly coupled to the phylogenetic affiliation of the host and its ecological traits. These results highlight that coral reef biodiversity is greater than previously appreciated, since the high diversity of macro-organisms supports a highly diversified microbial community. This suggest that beyond the loss of coral reefs-associated macroscopic species, anthropic activities on coral reefs could also lead to a loss of still unexplored host-associated microbial diversity, which urgently needs to be assessed.
AbstractList The surface of marine animals is covered by abundant and diversified microbial communities, which have major roles for the health of their host. While such microbiomes have been deeply examined in marine invertebrates such as corals and sponges, the microbiomes living on marine vertebrates have received less attention. Specifically, the diversity of these microbiomes, their variability among species, and their drivers are still mostly unknown, especially among the fish species living on coral reefs that contribute to key ecosystem services while they are increasingly affected by human activities. Here, we investigated these knowledge gaps analyzing the skin microbiome of 138 fish individuals belonging to 44 coral reef fish species living in the same area.BACKGROUNDThe surface of marine animals is covered by abundant and diversified microbial communities, which have major roles for the health of their host. While such microbiomes have been deeply examined in marine invertebrates such as corals and sponges, the microbiomes living on marine vertebrates have received less attention. Specifically, the diversity of these microbiomes, their variability among species, and their drivers are still mostly unknown, especially among the fish species living on coral reefs that contribute to key ecosystem services while they are increasingly affected by human activities. Here, we investigated these knowledge gaps analyzing the skin microbiome of 138 fish individuals belonging to 44 coral reef fish species living in the same area.Prokaryotic communities living on the skin of coral reef fishes are highly diverse, with on average more than 600 OTUs per fish, and differ from planktonic microbes. Skin microbiomes varied between fish individual and species, and interspecific differences were slightly coupled to the phylogenetic affiliation of the host and its ecological traits.RESULTSProkaryotic communities living on the skin of coral reef fishes are highly diverse, with on average more than 600 OTUs per fish, and differ from planktonic microbes. Skin microbiomes varied between fish individual and species, and interspecific differences were slightly coupled to the phylogenetic affiliation of the host and its ecological traits.These results highlight that coral reef biodiversity is greater than previously appreciated, since the high diversity of macro-organisms supports a highly diversified microbial community. This suggest that beyond the loss of coral reefs-associated macroscopic species, anthropic activities on coral reefs could also lead to a loss of still unexplored host-associated microbial diversity, which urgently needs to be assessed.CONCLUSIONSThese results highlight that coral reef biodiversity is greater than previously appreciated, since the high diversity of macro-organisms supports a highly diversified microbial community. This suggest that beyond the loss of coral reefs-associated macroscopic species, anthropic activities on coral reefs could also lead to a loss of still unexplored host-associated microbial diversity, which urgently needs to be assessed.
Abstract Background The surface of marine animals is covered by abundant and diversified microbial communities, which have major roles for the health of their host. While such microbiomes have been deeply examined in marine invertebrates such as corals and sponges, the microbiomes living on marine vertebrates have received less attention. Specifically, the diversity of these microbiomes, their variability among species, and their drivers are still mostly unknown, especially among the fish species living on coral reefs that contribute to key ecosystem services while they are increasingly affected by human activities. Here, we investigated these knowledge gaps analyzing the skin microbiome of 138 fish individuals belonging to 44 coral reef fish species living in the same area. Results Prokaryotic communities living on the skin of coral reef fishes are highly diverse, with on average more than 600 OTUs per fish, and differ from planktonic microbes. Skin microbiomes varied between fish individual and species, and interspecific differences were slightly coupled to the phylogenetic affiliation of the host and its ecological traits. Conclusions These results highlight that coral reef biodiversity is greater than previously appreciated, since the high diversity of macro-organisms supports a highly diversified microbial community. This suggest that beyond the loss of coral reefs-associated macroscopic species, anthropic activities on coral reefs could also lead to a loss of still unexplored host-associated microbial diversity, which urgently needs to be assessed.
Background : The surface of marine animals is covered by abundant and diversified microbial communities,whichhave major roles for the health of their host.While such microbiomes have been deeply examined in marineinvertebrates such as corals and sponges, the microbiomes living on marine vertebrates have received lessattention. Specifically, the diversity of these microbiomes, their variability among species, and their drivers arestill mostly unknown, especially among the fish species living on coral reefs that contribute to key ecosystemservices while they are increasingly affected by human activities. Here, we investigated these knowledge gapsanalyzing the skin microbiome of 138 fish individuals belonging to 44 coral reef fish species living in thesame area.Results : Prokaryotic communities living on the skin of coral reef fishes are highly diverse, with on averagemore than 600 OTUs per fish, and differ from planktonic microbes. Skin microbiomes varied between fishindividual and species, and interspecific differences were slightly coupled to the phylogenetic affiliation of thehost and its ecological traits.Conclusions : These results highlight that coral reef biodiversity is greater than previously appreciated, sincethe high diversity of macro-organisms supports a highly diversified microbial community. This suggest thatbeyond the loss of coral reefs-associated macroscopic species, anthropic activities on coral reefs could alsolead to a loss of still unexplored host-associated microbial diversity, which urgently needs to be assessed.
The surface of marine animals is covered by abundant and diversified microbial communities, which have major roles for the health of their host. While such microbiomes have been deeply examined in marine invertebrates such as corals and sponges, the microbiomes living on marine vertebrates have received less attention. Specifically, the diversity of these microbiomes, their variability among species, and their drivers are still mostly unknown, especially among the fish species living on coral reefs that contribute to key ecosystem services while they are increasingly affected by human activities. Here, we investigated these knowledge gaps analyzing the skin microbiome of 138 fish individuals belonging to 44 coral reef fish species living in the same area. Prokaryotic communities living on the skin of coral reef fishes are highly diverse, with on average more than 600 OTUs per fish, and differ from planktonic microbes. Skin microbiomes varied between fish individual and species, and interspecific differences were slightly coupled to the phylogenetic affiliation of the host and its ecological traits. These results highlight that coral reef biodiversity is greater than previously appreciated, since the high diversity of macro-organisms supports a highly diversified microbial community. This suggest that beyond the loss of coral reefs-associated macroscopic species, anthropic activities on coral reefs could also lead to a loss of still unexplored host-associated microbial diversity, which urgently needs to be assessed.
The surface of marine animals is covered by abundant and diversified microbial communities, which have major roles for the health of their host. While such microbiomes have been deeply examined in marine invertebrates such as corals and sponges, the microbiomes living on marine vertebrates have received less attention. Specifically, the diversity of these microbiomes, their variability among species, and their drivers are still mostly unknown, especially among the fish species living on coral reefs that contribute to key ecosystem services while they are increasingly affected by human activities. Here, we investigated these knowledge gaps analyzing the skin microbiome of 138 fish individuals belonging to 44 coral reef fish species living in the same area. Prokaryotic communities living on the skin of coral reef fishes are highly diverse, with on average more than 600 OTUs per fish, and differ from planktonic microbes. Skin microbiomes varied between fish individual and species, and interspecific differences were slightly coupled to the phylogenetic affiliation of the host and its ecological traits. These results highlight that coral reef biodiversity is greater than previously appreciated, since the high diversity of macro-organisms supports a highly diversified microbial community. This suggest that beyond the loss of coral reefs-associated macroscopic species, anthropic activities on coral reefs could also lead to a loss of still unexplored host-associated microbial diversity, which urgently needs to be assessed.
Background The surface of marine animals is covered by abundant and diversified microbial communities, which have major roles for the health of their host. While such microbiomes have been deeply examined in marine invertebrates such as corals and sponges, the microbiomes living on marine vertebrates have received less attention. Specifically, the diversity of these microbiomes, their variability among species, and their drivers are still mostly unknown, especially among the fish species living on coral reefs that contribute to key ecosystem services while they are increasingly affected by human activities. Here, we investigated these knowledge gaps analyzing the skin microbiome of 138 fish individuals belonging to 44 coral reef fish species living in the same area. Results Prokaryotic communities living on the skin of coral reef fishes are highly diverse, with on average more than 600 OTUs per fish, and differ from planktonic microbes. Skin microbiomes varied between fish individual and species, and interspecific differences were slightly coupled to the phylogenetic affiliation of the host and its ecological traits. Conclusions These results highlight that coral reef biodiversity is greater than previously appreciated, since the high diversity of macro-organisms supports a highly diversified microbial community. This suggest that beyond the loss of coral reefs-associated macroscopic species, anthropic activities on coral reefs could also lead to a loss of still unexplored host-associated microbial diversity, which urgently needs to be assessed. Keywords: Tropical, Teleost, Microbiota, Phylogenetic diversity, Phylosymbiosis, Phylogenetic signal
Background The surface of marine animals is covered by abundant and diversified microbial communities, which have major roles for the health of their host. While such microbiomes have been deeply examined in marine invertebrates such as corals and sponges, the microbiomes living on marine vertebrates have received less attention. Specifically, the diversity of these microbiomes, their variability among species, and their drivers are still mostly unknown, especially among the fish species living on coral reefs that contribute to key ecosystem services while they are increasingly affected by human activities. Here, we investigated these knowledge gaps analyzing the skin microbiome of 138 fish individuals belonging to 44 coral reef fish species living in the same area. Results Prokaryotic communities living on the skin of coral reef fishes are highly diverse, with on average more than 600 OTUs per fish, and differ from planktonic microbes. Skin microbiomes varied between fish individual and species, and interspecific differences were slightly coupled to the phylogenetic affiliation of the host and its ecological traits. Conclusions These results highlight that coral reef biodiversity is greater than previously appreciated, since the high diversity of macro-organisms supports a highly diversified microbial community. This suggest that beyond the loss of coral reefs-associated macroscopic species, anthropic activities on coral reefs could also lead to a loss of still unexplored host-associated microbial diversity, which urgently needs to be assessed.
ArticleNumber 147
Audience Academic
Author Bouvier, Thierry
Chiarello, Marlène
Claverie, Thomas
Graham, Nicholas A. J.
Rieuvilleneuve, Fabien
Auguet, Jean-Christophe
Sucré, Elliot
Bouvier, Corinne
Bettarel, Yvan
Villéger, Sébastien
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BackLink https://www.ncbi.nlm.nih.gov/pubmed/30143055$$D View this record in MEDLINE/PubMed
https://hal.umontpellier.fr/hal-02002252$$DView record in HAL
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Issue 1
Keywords Teleost
Microbiota
Tropical
Phylogenetic signal
Phylogenetic diversity
Phylosymbiosis
Language English
License Distributed under a Creative Commons Attribution 4.0 International License: http://creativecommons.org/licenses/by/4.0
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Snippet The surface of marine animals is covered by abundant and diversified microbial communities, which have major roles for the health of their host. While such...
Background The surface of marine animals is covered by abundant and diversified microbial communities, which have major roles for the health of their host....
Background : The surface of marine animals is covered by abundant and diversified microbial communities,whichhave major roles for the health of their...
Abstract Background The surface of marine animals is covered by abundant and diversified microbial communities, which have major roles for the health of their...
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StartPage 147
SubjectTerms Analysis
Animals
Bacteria
Biodiversity
Coral reef ecosystems
Coral reefs
Corals
Environmental Sciences
Fish
Genetic aspects
Geobiology
Immune system
Interspecific
Life Sciences
Marine organisms
Microbiomes
Microbiota
Phylogenetic diversity
Phylogenetic signal
Phylogenetics
Phylogeny
Phylosymbiosis
Skin
Software
Species
Teleost
Tropical
Vertebrates
Zebrafish
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Title Skin microbiome of coral reef fish is highly variable and driven by host phylogeny and diet
URI https://www.ncbi.nlm.nih.gov/pubmed/30143055
https://www.proquest.com/docview/2108764541
https://www.proquest.com/docview/2093395673
https://hal.umontpellier.fr/hal-02002252
https://pubmed.ncbi.nlm.nih.gov/PMC6109317
https://doaj.org/article/3c35e71abb9744859e5563654fd0c8a7
Volume 6
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