Combining independent de novo assemblies to optimize leaf transcriptome of Persian walnut

• Published in: PloS one Vol. 15; no. 4; p. e0232005
• Main Authors: Sadat-Hosseini, Mohammad, Bakhtiarizadeh, Mohammad Reza, Boroomand, Naser, Tohidfar, Masoud, Vahdati, Kourosh
• Format: Journal Article
• Language: English
• Published: United States Public Library of Science 28.04.2020; Public Library of Science (PLoS)
• Subjects: Algorithms; Analysis; Arthropods; Assemblies; Assembly; Biology and Life Sciences; Computational Biology - methods; Contig Mapping - methods; Crop yields; Cultivars; DNA binding proteins; Explosions; Future predictions; Gene expression; Gene Expression Profiling - methods; Gene Library; Genomes; Genomic libraries; Genomics; High-Throughput Nucleotide Sequencing - methods; Homology; Horticulture; Juglans - genetics; Leaves; Molecular Sequence Annotation; Peptides; Plant Leaves - genetics; Plant Proteins - genetics; Research and Analysis Methods; Researchers; Science literature; Sequence Analysis, RNA - methods; Soil sciences; Studies; Transcription factors; Transmembrane domains; Walnuts; Iran; United States > US; China

Transcriptome resources can facilitate to increase yield and quality of walnuts. Finding the best transcriptome assembly has not been the subject of walnuts research as yet. This research generated 240,179,782 reads from 11 walnut leaves according to cDNA libraries. The reads provided a complete de...