TraV: A Genome Context Sensitive Transcriptome Browser

• Published in: PloS one Vol. 9; no. 4; p. e93677
• Main Authors: Dietrich, Sascha, Wiegand, Sandra, Liesegang, Heiko
• Format: Journal Article
• Language: English
• Published: United States Public Library of Science 01.04.2014; Public Library of Science (PLoS)
• Subjects: Analysis; Analytical methods; Bacillus - genetics; Bacillus - metabolism; Bacterial Proteins - biosynthesis; Bacterial Proteins - genetics; Bioinformatics; Biology and Life Sciences; Computer and Information Sciences; Data analysis; Databases, Genetic; Datasets; Experiments; Gene expression; Gene mapping; Gene sequencing; Genomes; Genomics; Mapping; Pathogens; Ribonucleic acid; RNA; Transcription; Transcriptome; User-Computer Interface; Visualization; Visualization (Computers)

Next-generation sequencing (NGS) technologies like Illumina and ABI Solid enable the investigation of transcriptional activities of genomes. While read mapping tools have been continually improved to enable the processing of the increasing number of reads generated by NGS technologies, analysis and...