AQUA Cloning: A Versatile and Simple Enzyme-Free Cloning Approach
Assembly cloning is increasingly replacing conventional restriction enzyme and DNA-ligase-dependent cloning methods for reasons of efficiency and performance. Here, we describe AQUA (advanced quick assembly), a simple and versatile seamless assembly cloning approach. We demonstrate the applicability...
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Published in | PloS one Vol. 10; no. 9; p. e0137652 |
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Main Authors | , , , , , |
Format | Journal Article |
Language | English |
Published |
United States
Public Library of Science
11.09.2015
Public Library of Science (PLoS) |
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Abstract | Assembly cloning is increasingly replacing conventional restriction enzyme and DNA-ligase-dependent cloning methods for reasons of efficiency and performance. Here, we describe AQUA (advanced quick assembly), a simple and versatile seamless assembly cloning approach. We demonstrate the applicability and versatility of AQUA Cloning in selected proof-of-principle applications including targeted insertion-, deletion- and site-directed point-mutagenesis, and combinatorial cloning. Furthermore, we show the one pot de novo assembly of multiple DNA fragments into a single circular plasmid encoding a complex light- and chemically-regulated Boolean A NIMPLY B logic operation. AQUA Cloning harnesses intrinsic in vivo processing of linear DNA fragments with short regions of homology of 16 to 32 bp mediated by Escherichia coli. It does not require any kits, enzymes or preparations of reagents and is the simplest assembly cloning protocol to date. |
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AbstractList | Assembly cloning is increasingly replacing conventional restriction enzyme and DNA-ligase-dependent cloning methods for reasons of efficiency and performance. Here, we describe AQUA (
a
dvanced
qu
ick
a
ssembly), a simple and versatile seamless assembly cloning approach. We demonstrate the applicability and versatility of AQUA Cloning in selected proof-of-principle applications including targeted insertion-, deletion- and site-directed point-mutagenesis, and combinatorial cloning. Furthermore, we show the one pot
de novo
assembly of multiple DNA fragments into a single circular plasmid encoding a complex light- and chemically-regulated Boolean A NIMPLY B logic operation. AQUA Cloning harnesses intrinsic
in vivo
processing of linear DNA fragments with short regions of homology of 16 to 32 bp mediated by
Escherichia coli
. It does not require any kits, enzymes or preparations of reagents and is the simplest assembly cloning protocol to date. Assembly cloning is increasingly replacing conventional restriction enzyme and DNA-ligase-dependent cloning methods for reasons of efficiency and performance. Here, we describe AQUA (advanced quick assembly), a simple and versatile seamless assembly cloning approach. We demonstrate the applicability and versatility of AQUA Cloning in selected proof-of-principle applications including targeted insertion-, deletion- and site-directed point-mutagenesis, and combinatorial cloning. Furthermore, we show the one pot de novo assembly of multiple DNA fragments into a single circular plasmid encoding a complex light- and chemically-regulated Boolean A NIMPLY B logic operation. AQUA Cloning harnesses intrinsic in vivo processing of linear DNA fragments with short regions of homology of 16 to 32 bp mediated by Escherichia coli. It does not require any kits, enzymes or preparations of reagents and is the simplest assembly cloning protocol to date. |
Audience | Academic |
Author | Gonschorek, Patrick Zurbriggen, Matias D Beyer, Hannes M Meier, Matthias Samodelov, Sophia L Weber, Wilfried |
AuthorAffiliation | 1 Faculty of Biology, University of Freiburg, Freiburg, Germany 3 BIOSS Centre for Biological Signalling Studies, University of Freiburg, Freiburg, Germany 4 IMTEK, Department of Microsystems Engineering, University of Freiburg, Freiburg, Germany Indian Institute of Science, INDIA 2 Spemann Graduate School of Biology and Medicine (SGBM), University of Freiburg, Freiburg, Germany |
AuthorAffiliation_xml | – name: 2 Spemann Graduate School of Biology and Medicine (SGBM), University of Freiburg, Freiburg, Germany – name: 3 BIOSS Centre for Biological Signalling Studies, University of Freiburg, Freiburg, Germany – name: 1 Faculty of Biology, University of Freiburg, Freiburg, Germany – name: 4 IMTEK, Department of Microsystems Engineering, University of Freiburg, Freiburg, Germany – name: Indian Institute of Science, INDIA |
Author_xml | – sequence: 1 givenname: Hannes M surname: Beyer fullname: Beyer, Hannes M organization: Faculty of Biology, University of Freiburg, Freiburg, Germany; Spemann Graduate School of Biology and Medicine (SGBM), University of Freiburg, Freiburg, Germany – sequence: 2 givenname: Patrick surname: Gonschorek fullname: Gonschorek, Patrick organization: Faculty of Biology, University of Freiburg, Freiburg, Germany – sequence: 3 givenname: Sophia L surname: Samodelov fullname: Samodelov, Sophia L organization: Faculty of Biology, University of Freiburg, Freiburg, Germany; Spemann Graduate School of Biology and Medicine (SGBM), University of Freiburg, Freiburg, Germany – sequence: 4 givenname: Matthias surname: Meier fullname: Meier, Matthias organization: BIOSS Centre for Biological Signalling Studies, University of Freiburg, Freiburg, Germany; IMTEK, Department of Microsystems Engineering, University of Freiburg, Freiburg, Germany – sequence: 5 givenname: Wilfried surname: Weber fullname: Weber, Wilfried organization: Faculty of Biology, University of Freiburg, Freiburg, Germany; Spemann Graduate School of Biology and Medicine (SGBM), University of Freiburg, Freiburg, Germany; BIOSS Centre for Biological Signalling Studies, University of Freiburg, Freiburg, Germany – sequence: 6 givenname: Matias D surname: Zurbriggen fullname: Zurbriggen, Matias D organization: Faculty of Biology, University of Freiburg, Freiburg, Germany; BIOSS Centre for Biological Signalling Studies, University of Freiburg, Freiburg, Germany |
BackLink | https://www.ncbi.nlm.nih.gov/pubmed/26360249$$D View this record in MEDLINE/PubMed |
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Copyright | COPYRIGHT 2015 Public Library of Science 2015 Beyer et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. 2015 Beyer et al 2015 Beyer et al |
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Notes | Competing Interests: The authors have declared that no competing interests exist. Conceived and designed the experiments: HMB MM WW MDZ. Performed the experiments: HMB PG SLS. Analyzed the data: HMB PG MDZ. Contributed reagents/materials/analysis tools: MM WW MDZ. Wrote the paper: HMB MDZ. |
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SubjectTerms | Analysis Assembly Boolean algebra Clonal deletion Cloning Cloning, Molecular - methods Combinatorial analysis Deoxyribonucleic acid Distribution DNA DNA polymerase E coli Enzymes Escherichia coli Escherichia coli - genetics Escherichia coli - metabolism Fragments Gene deletion Gene Expression Genetic aspects Genetic engineering Harnesses Homology Insertion Mutagenesis Mutagenesis, Site-Directed Plasmids Plasmids - genetics Reagents Studies Synthetic biology |
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Title | AQUA Cloning: A Versatile and Simple Enzyme-Free Cloning Approach |
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