Associations of canopy leaf traits with SNP markers in durum wheat (Triticum turgidum L. durum (Desf.))

The canopy leaves including the top three, i.e., the flag, the 2nd and 3rd from the top, are important for photosynthesis and grain yield of wheat. Molecular markers associated with traits of these leaves should be helpful for the high-yielding breeding. In this study, 1366 single nucleotide polymor...

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Published inPloS one Vol. 13; no. 10; p. e0206226
Main Authors Huang, Sisi, Sun, Longqing, Hu, Xin, Wang, Yanhong, Zhang, Yujuan, Nevo, Eviatar, Peng, Junhua, Sun, Dongfa
Format Journal Article
LanguageEnglish
Published United States Public Library of Science 23.10.2018
Public Library of Science (PLoS)
Subjects
Agricultural production
Analysis
Barley
Biology and Life Sciences
Biosynthesis
Breeding
Canopies
Carbohydrates
Chlorophyll
Chlorophyll content
Chloroplasts
Chromosomes
Corn
Crop yield
Crops
Cultivars
Ecology and Environmental Sciences
Efficiency
Enzymes
Genes
Genetic aspects
Genomes
Leaves
Markers
Medical research
Metabolism
Morphology
Personality traits
Photosynthesis
Physical Sciences
Physiological aspects
Plant breeding
Plant sciences
Research and Analysis Methods
Rice
Single nucleotide polymorphisms
Single-nucleotide polymorphism
Sun
Triticum durum
Weight
Wheat
China
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Abstract The canopy leaves including the top three, i.e., the flag, the 2nd and 3rd from the top, are important for photosynthesis and grain yield of wheat. Molecular markers associated with traits of these leaves should be helpful for the high-yielding breeding. In this study, 1366 single nucleotide polymorphisms (SNP) markers covering the whole genome of durum wheat were used to genotype 150 cultivars collected from 46 countries and regions in the world. Leaf length, leaf width and chlorophyll content of the top three leaves were measured, respectively, in three consecutive years. Association analyses were performed on the leaf traits and SNP markers. A total of 120 SNP marker associations were detected on 13 of the 14 chromosomes. Among these markers, 83 were associated with the canopy leaf traits, 10 with 1000-grain weight, and 29 with kernel number per spike. This study is helpful for better understanding the potential and genetic basis of functional leaves, and facilitates pyramiding of the favorable alleles using marker assisted selection for ideal plant-type and high photosynthesis efficiency in durum wheat breeding.
AbstractList The canopy leaves including the top three, i.e., the flag, the 2nd and 3rd from the top, are important for photosynthesis and grain yield of wheat. Molecular markers associated with traits of these leaves should be helpful for the high-yielding breeding. In this study, 1366 single nucleotide polymorphisms (SNP) markers covering the whole genome of durum wheat were used to genotype 150 cultivars collected from 46 countries and regions in the world. Leaf length, leaf width and chlorophyll content of the top three leaves were measured, respectively, in three consecutive years. Association analyses were performed on the leaf traits and SNP markers. A total of 120 SNP marker associations were detected on 13 of the 14 chromosomes. Among these markers, 83 were associated with the canopy leaf traits, 10 with 1000-grain weight, and 29 with kernel number per spike. This study is helpful for better understanding the potential and genetic basis of functional leaves, and facilitates pyramiding of the favorable alleles using marker assisted selection for ideal plant-type and high photosynthesis efficiency in durum wheat breeding.
The canopy leaves including the top three, i.e., the flag, the 2nd and 3rd from the top, are important for photosynthesis and grain yield of wheat. Molecular markers associated with traits of these leaves should be helpful for the high-yielding breeding. In this study, 1366 single nucleotide polymorphisms (SNP) markers covering the whole genome of durum wheat were used to genotype 150 cultivars collected from 46 countries and regions in the world. Leaf length, leaf width and chlorophyll content of the top three leaves were measured, respectively, in three consecutive years. Association analyses were performed on the leaf traits and SNP markers. A total of 120 SNP marker associations were detected on 13 of the 14 chromosomes. Among these markers, 83 were associated with the canopy leaf traits, 10 with 1000-grain weight, and 29 with kernel number per spike. This study is helpful for better understanding the potential and genetic basis of functional leaves, and facilitates pyramiding of the favorable alleles using marker assisted selection for ideal plant-type and high photosynthesis efficiency in durum wheat breeding.The canopy leaves including the top three, i.e., the flag, the 2nd and 3rd from the top, are important for photosynthesis and grain yield of wheat. Molecular markers associated with traits of these leaves should be helpful for the high-yielding breeding. In this study, 1366 single nucleotide polymorphisms (SNP) markers covering the whole genome of durum wheat were used to genotype 150 cultivars collected from 46 countries and regions in the world. Leaf length, leaf width and chlorophyll content of the top three leaves were measured, respectively, in three consecutive years. Association analyses were performed on the leaf traits and SNP markers. A total of 120 SNP marker associations were detected on 13 of the 14 chromosomes. Among these markers, 83 were associated with the canopy leaf traits, 10 with 1000-grain weight, and 29 with kernel number per spike. This study is helpful for better understanding the potential and genetic basis of functional leaves, and facilitates pyramiding of the favorable alleles using marker assisted selection for ideal plant-type and high photosynthesis efficiency in durum wheat breeding.
Audience Academic
Author Zhang, Yujuan
Nevo, Eviatar
Peng, Junhua
Sun, Longqing
Sun, Dongfa
Huang, Sisi
Hu, Xin
Wang, Yanhong
AuthorAffiliation 2 Institute of Evolution, University of Haifa, Mount Carmel, Haifa, Israel
Institute of Genetics and Developmental Biology Chinese Academy of Sciences, CHINA
1 College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, Hubei, China
4 Life Science and Technology Center, China National Seed Group Co., Ltd, Wuhan, Hubei, China
3 College of Agriculture, Guangdong Ocean University, Zhanjiang, Guangdong, China
5 Hubei Collaborative Innovation Center for Grain Industry, Changjiang University, Jingzhou, Hubei, China
AuthorAffiliation_xml – name: Institute of Genetics and Developmental Biology Chinese Academy of Sciences, CHINA
– name: 1 College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, Hubei, China
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– name: 5 Hubei Collaborative Innovation Center for Grain Industry, Changjiang University, Jingzhou, Hubei, China
– name: 2 Institute of Evolution, University of Haifa, Mount Carmel, Haifa, Israel
– name: 3 College of Agriculture, Guangdong Ocean University, Zhanjiang, Guangdong, China
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Competing Interests: We have the following interest. Junhua Peng is employed by China National Seed Group Co. Ltd. There are no patents, products in development or marketed products to declare. This does not alter our adherence to all the PLOS ONE policies on sharing data and materials, as detailed online in the guide for authors.
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Snippet The canopy leaves including the top three, i.e., the flag, the 2nd and 3rd from the top, are important for photosynthesis and grain yield of wheat. Molecular...
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StartPage e0206226
SubjectTerms Agricultural production
Analysis
Barley
Biology and Life Sciences
Biosynthesis
Breeding
Canopies
Carbohydrates
Chlorophyll
Chlorophyll content
Chloroplasts
Chromosomes
Corn
Crop yield
Crops
Cultivars
Ecology and Environmental Sciences
Efficiency
Enzymes
Genes
Genetic aspects
Genomes
Leaves
Markers
Medical research
Metabolism
Morphology
Personality traits
Photosynthesis
Physical Sciences
Physiological aspects
Plant breeding
Plant sciences
Research and Analysis Methods
Rice
Single nucleotide polymorphisms
Single-nucleotide polymorphism
Sun
Triticum durum
Weight
Wheat
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Title Associations of canopy leaf traits with SNP markers in durum wheat (Triticum turgidum L. durum (Desf.))
URI https://www.ncbi.nlm.nih.gov/pubmed/30352102
https://www.proquest.com/docview/2124453192
https://www.proquest.com/docview/2125298411
https://pubmed.ncbi.nlm.nih.gov/PMC6198983
https://doaj.org/article/64f10f5b515d45049f32d15ab8d196aa
http://dx.doi.org/10.1371/journal.pone.0206226
Volume 13
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