A next generation approach to species delimitation reveals the role of hybridization in a cryptic species complex of corals

Our ability to investigate processes shaping the evolutionary diversification of corals (Cnidaria: Anthozoa) is limited by a lack of understanding of species boundaries. Discerning species of corals has been challenging due to a multitude of factors, including homoplasious and plastic morphological...

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Published inBMC ecology and evolution Vol. 19; no. 1; pp. 116 - 19
Main Authors Quattrini, Andrea M., Wu, Tiana, Soong, Keryea, Jeng, Ming-Shiou, Benayahu, Yehuda, McFadden, Catherine S.
Format Journal Article
LanguageEnglish
Published England BioMed Central Ltd 06.06.2019
BioMed Central
BMC
Subjects
Admixtures
Animals
Anthozoa
Anthozoa - classification
Anthozoa - genetics
Bar codes
Biodiversity
Boundaries
Coalescence
Coalescing
Coral reefs
Corals
Cryptic species
Deoxyribonucleic acid
Discriminant Analysis
DNA
DNA Barcoding, Taxonomic
DNA sequencing
Evolution
Gene frequency
Genetic aspects
Genetic distance
Genetic research
Genetics
Haplotypes
Hybridization
Hybridization, Genetic
Laboratories
Likelihood Functions
Markers
Metabolites
Morphology
Phylogenetics
Phylogeny
Principal Component Analysis
RADSeq
Reefs
Sequence Analysis, DNA
Sinularia
Species
Species Specificity
Taxonomy
Coral reefs
Octocorallia
Taxonomy
Anthozoa
Phylogenetics
Hybridization
RADSeq
Online AccessGet full text
ISSN1471-2148
1471-2148
2730-7182
DOI10.1186/s12862-019-1427-y

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Abstract Our ability to investigate processes shaping the evolutionary diversification of corals (Cnidaria: Anthozoa) is limited by a lack of understanding of species boundaries. Discerning species of corals has been challenging due to a multitude of factors, including homoplasious and plastic morphological characters and the use of molecular markers that are either not informative or have not completely sorted. Hybridization can also blur species boundaries by leading to incongruence between morphology and genetics. We used traditional DNA barcoding and restriction-site associated DNA sequencing combined with coalescence-based and allele-frequency methods to elucidate species boundaries and simultaneously examine the potential role of hybridization in a speciose genus of octocoral, Sinularia. Species delimitations using two widely used DNA barcode markers, mtMutS and 28S rDNA, were incongruent with one another and with the morphospecies identifications. When mtMutS and 28S were concatenated, a 0.3% genetic distance threshold delimited the majority of morphospecies. In contrast, 12 of the 15 examined morphospecies formed well-supported monophyletic clades in both concatenated RAxML phylogenies and SNAPP species trees of > 6000 RADSeq loci. DAPC and Structure analyses also supported morphospecies assignments, but indicated the potential for two additional cryptic species. Three morphologically distinct species pairs could not, however, be distinguished genetically. ABBA-BABA tests demonstrated significant admixture between some of those species, suggesting that hybridization may confound species delimitation in Sinularia. A genomic approach can help to guide species delimitation while simultaneously elucidating the processes generating coral diversity. Results support the hypothesis that hybridization is an important mechanism in the evolution of Anthozoa, including octocorals, and future research should examine the contribution of this mechanism in generating diversity across the coral tree of life.
AbstractList Our ability to investigate processes shaping the evolutionary diversification of corals (Cnidaria: Anthozoa) is limited by a lack of understanding of species boundaries. Discerning species of corals has been challenging due to a multitude of factors, including homoplasious and plastic morphological characters and the use of molecular markers that are either not informative or have not completely sorted. Hybridization can also blur species boundaries by leading to incongruence between morphology and genetics. We used traditional DNA barcoding and restriction-site associated DNA sequencing combined with coalescence-based and allele-frequency methods to elucidate species boundaries and simultaneously examine the potential role of hybridization in a speciose genus of octocoral, Sinularia. Species delimitations using two widely used DNA barcode markers, mtMutS and 28S rDNA, were incongruent with one another and with the morphospecies identifications. When mtMutS and 28S were concatenated, a 0.3% genetic distance threshold delimited the majority of morphospecies. In contrast, 12 of the 15 examined morphospecies formed well-supported monophyletic clades in both concatenated RAxML phylogenies and SNAPP species trees of > 6000 RADSeq loci. DAPC and Structure analyses also supported morphospecies assignments, but indicated the potential for two additional cryptic species. Three morphologically distinct species pairs could not, however, be distinguished genetically. ABBA-BABA tests demonstrated significant admixture between some of those species, suggesting that hybridization may confound species delimitation in Sinularia. A genomic approach can help to guide species delimitation while simultaneously elucidating the processes generating coral diversity. Results support the hypothesis that hybridization is an important mechanism in the evolution of Anthozoa, including octocorals, and future research should examine the contribution of this mechanism in generating diversity across the coral tree of life.
Background Our ability to investigate processes shaping the evolutionary diversification of corals (Cnidaria: Anthozoa) is limited by a lack of understanding of species boundaries. Discerning species of corals has been challenging due to a multitude of factors, including homoplasious and plastic morphological characters and the use of molecular markers that are either not informative or have not completely sorted. Hybridization can also blur species boundaries by leading to incongruence between morphology and genetics. We used traditional DNA barcoding and restriction-site associated DNA sequencing combined with coalescence-based and allele-frequency methods to elucidate species boundaries and simultaneously examine the potential role of hybridization in a speciose genus of octocoral, Sinularia. Results Species delimitations using two widely used DNA barcode markers, mtMutS and 28S rDNA, were incongruent with one another and with the morphospecies identifications. When mtMutS and 28S were concatenated, a 0.3% genetic distance threshold delimited the majority of morphospecies. In contrast, 12 of the 15 examined morphospecies formed well-supported monophyletic clades in both concatenated RAxML phylogenies and SNAPP species trees of > 6000 RADSeq loci. DAPC and Structure analyses also supported morphospecies assignments, but indicated the potential for two additional cryptic species. Three morphologically distinct species pairs could not, however, be distinguished genetically. ABBA-BABA tests demonstrated significant admixture between some of those species, suggesting that hybridization may confound species delimitation in Sinularia. Conclusions A genomic approach can help to guide species delimitation while simultaneously elucidating the processes generating coral diversity. Results support the hypothesis that hybridization is an important mechanism in the evolution of Anthozoa, including octocorals, and future research should examine the contribution of this mechanism in generating diversity across the coral tree of life.
Abstract Background Our ability to investigate processes shaping the evolutionary diversification of corals (Cnidaria: Anthozoa) is limited by a lack of understanding of species boundaries. Discerning species of corals has been challenging due to a multitude of factors, including homoplasious and plastic morphological characters and the use of molecular markers that are either not informative or have not completely sorted. Hybridization can also blur species boundaries by leading to incongruence between morphology and genetics. We used traditional DNA barcoding and restriction-site associated DNA sequencing combined with coalescence-based and allele-frequency methods to elucidate species boundaries and simultaneously examine the potential role of hybridization in a speciose genus of octocoral, Sinularia. Results Species delimitations using two widely used DNA barcode markers, mtMutS and 28S rDNA, were incongruent with one another and with the morphospecies identifications. When mtMutS and 28S were concatenated, a 0.3% genetic distance threshold delimited the majority of morphospecies. In contrast, 12 of the 15 examined morphospecies formed well-supported monophyletic clades in both concatenated RAxML phylogenies and SNAPP species trees of > 6000 RADSeq loci. DAPC and Structure analyses also supported morphospecies assignments, but indicated the potential for two additional cryptic species. Three morphologically distinct species pairs could not, however, be distinguished genetically. ABBA-BABA tests demonstrated significant admixture between some of those species, suggesting that hybridization may confound species delimitation in Sinularia. Conclusions A genomic approach can help to guide species delimitation while simultaneously elucidating the processes generating coral diversity. Results support the hypothesis that hybridization is an important mechanism in the evolution of Anthozoa, including octocorals, and future research should examine the contribution of this mechanism in generating diversity across the coral tree of life.
Our ability to investigate processes shaping the evolutionary diversification of corals (Cnidaria: Anthozoa) is limited by a lack of understanding of species boundaries. Discerning species of corals has been challenging due to a multitude of factors, including homoplasious and plastic morphological characters and the use of molecular markers that are either not informative or have not completely sorted. Hybridization can also blur species boundaries by leading to incongruence between morphology and genetics. We used traditional DNA barcoding and restriction-site associated DNA sequencing combined with coalescence-based and allele-frequency methods to elucidate species boundaries and simultaneously examine the potential role of hybridization in a speciose genus of octocoral, Sinularia. Species delimitations using two widely used DNA barcode markers, mtMutS and 28S rDNA, were incongruent with one another and with the morphospecies identifications. When mtMutS and 28S were concatenated, a 0.3% genetic distance threshold delimited the majority of morphospecies. In contrast, 12 of the 15 examined morphospecies formed well-supported monophyletic clades in both concatenated RAxML phylogenies and SNAPP species trees of > 6000 RADSeq loci. DAPC and Structure analyses also supported morphospecies assignments, but indicated the potential for two additional cryptic species. Three morphologically distinct species pairs could not, however, be distinguished genetically. ABBA-BABA tests demonstrated significant admixture between some of those species, suggesting that hybridization may confound species delimitation in Sinularia. A genomic approach can help to guide species delimitation while simultaneously elucidating the processes generating coral diversity. Results support the hypothesis that hybridization is an important mechanism in the evolution of Anthozoa, including octocorals, and future research should examine the contribution of this mechanism in generating diversity across the coral tree of life.
Background Our ability to investigate processes shaping the evolutionary diversification of corals (Cnidaria: Anthozoa) is limited by a lack of understanding of species boundaries. Discerning species of corals has been challenging due to a multitude of factors, including homoplasious and plastic morphological characters and the use of molecular markers that are either not informative or have not completely sorted. Hybridization can also blur species boundaries by leading to incongruence between morphology and genetics. We used traditional DNA barcoding and restriction-site associated DNA sequencing combined with coalescence-based and allele-frequency methods to elucidate species boundaries and simultaneously examine the potential role of hybridization in a speciose genus of octocoral, Sinularia. Results Species delimitations using two widely used DNA barcode markers, mtMutS and 28S rDNA, were incongruent with one another and with the morphospecies identifications. When mtMutS and 28S were concatenated, a 0.3% genetic distance threshold delimited the majority of morphospecies. In contrast, 12 of the 15 examined morphospecies formed well-supported monophyletic clades in both concatenated RAxML phylogenies and SNAPP species trees of > 6000 RADSeq loci. DAPC and Structure analyses also supported morphospecies assignments, but indicated the potential for two additional cryptic species. Three morphologically distinct species pairs could not, however, be distinguished genetically. ABBA-BABA tests demonstrated significant admixture between some of those species, suggesting that hybridization may confound species delimitation in Sinularia. Conclusions A genomic approach can help to guide species delimitation while simultaneously elucidating the processes generating coral diversity. Results support the hypothesis that hybridization is an important mechanism in the evolution of Anthozoa, including octocorals, and future research should examine the contribution of this mechanism in generating diversity across the coral tree of life. Keywords: Hybridization, RADSeq, Phylogenetics, Coral reefs, Taxonomy, Anthozoa, Octocorallia
Our ability to investigate processes shaping the evolutionary diversification of corals (Cnidaria: Anthozoa) is limited by a lack of understanding of species boundaries. Discerning species of corals has been challenging due to a multitude of factors, including homoplasious and plastic morphological characters and the use of molecular markers that are either not informative or have not completely sorted. Hybridization can also blur species boundaries by leading to incongruence between morphology and genetics. We used traditional DNA barcoding and restriction-site associated DNA sequencing combined with coalescence-based and allele-frequency methods to elucidate species boundaries and simultaneously examine the potential role of hybridization in a speciose genus of octocoral, Sinularia.BACKGROUNDOur ability to investigate processes shaping the evolutionary diversification of corals (Cnidaria: Anthozoa) is limited by a lack of understanding of species boundaries. Discerning species of corals has been challenging due to a multitude of factors, including homoplasious and plastic morphological characters and the use of molecular markers that are either not informative or have not completely sorted. Hybridization can also blur species boundaries by leading to incongruence between morphology and genetics. We used traditional DNA barcoding and restriction-site associated DNA sequencing combined with coalescence-based and allele-frequency methods to elucidate species boundaries and simultaneously examine the potential role of hybridization in a speciose genus of octocoral, Sinularia.Species delimitations using two widely used DNA barcode markers, mtMutS and 28S rDNA, were incongruent with one another and with the morphospecies identifications. When mtMutS and 28S were concatenated, a 0.3% genetic distance threshold delimited the majority of morphospecies. In contrast, 12 of the 15 examined morphospecies formed well-supported monophyletic clades in both concatenated RAxML phylogenies and SNAPP species trees of > 6000 RADSeq loci. DAPC and Structure analyses also supported morphospecies assignments, but indicated the potential for two additional cryptic species. Three morphologically distinct species pairs could not, however, be distinguished genetically. ABBA-BABA tests demonstrated significant admixture between some of those species, suggesting that hybridization may confound species delimitation in Sinularia.RESULTSSpecies delimitations using two widely used DNA barcode markers, mtMutS and 28S rDNA, were incongruent with one another and with the morphospecies identifications. When mtMutS and 28S were concatenated, a 0.3% genetic distance threshold delimited the majority of morphospecies. In contrast, 12 of the 15 examined morphospecies formed well-supported monophyletic clades in both concatenated RAxML phylogenies and SNAPP species trees of > 6000 RADSeq loci. DAPC and Structure analyses also supported morphospecies assignments, but indicated the potential for two additional cryptic species. Three morphologically distinct species pairs could not, however, be distinguished genetically. ABBA-BABA tests demonstrated significant admixture between some of those species, suggesting that hybridization may confound species delimitation in Sinularia.A genomic approach can help to guide species delimitation while simultaneously elucidating the processes generating coral diversity. Results support the hypothesis that hybridization is an important mechanism in the evolution of Anthozoa, including octocorals, and future research should examine the contribution of this mechanism in generating diversity across the coral tree of life.CONCLUSIONSA genomic approach can help to guide species delimitation while simultaneously elucidating the processes generating coral diversity. Results support the hypothesis that hybridization is an important mechanism in the evolution of Anthozoa, including octocorals, and future research should examine the contribution of this mechanism in generating diversity across the coral tree of life.
ArticleNumber 116
Audience Academic
Author Benayahu, Yehuda
Soong, Keryea
McFadden, Catherine S.
Quattrini, Andrea M.
Wu, Tiana
Jeng, Ming-Shiou
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  givenname: Andrea M.
  orcidid: 0000-0002-4247-3055
  surname: Quattrini
  fullname: Quattrini, Andrea M.
– sequence: 2
  givenname: Tiana
  surname: Wu
  fullname: Wu, Tiana
– sequence: 3
  givenname: Keryea
  surname: Soong
  fullname: Soong, Keryea
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  givenname: Ming-Shiou
  surname: Jeng
  fullname: Jeng, Ming-Shiou
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  givenname: Yehuda
  surname: Benayahu
  fullname: Benayahu, Yehuda
– sequence: 6
  givenname: Catherine S.
  surname: McFadden
  fullname: McFadden, Catherine S.
BackLink https://www.ncbi.nlm.nih.gov/pubmed/31170912$$D View this record in MEDLINE/PubMed
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Cites_doi 10.1007/s002270100584
10.1101/440289
10.3897/zookeys.581.7455
10.1080/10635150601146041
10.1016/j.ympev.2017.03.023
10.1038/srep01520
10.1016/j.ympev.2017.04.025
10.1111/j.1755-0998.2010.02875.x
10.7717/peerj.1128
10.1093/oxfordjournals.molbev.a026073
10.1007/s00227-008-0972-5
10.1111/mec.12354
10.1017/CBO9781139095112
10.1073/pnas.0607004104
10.1093/sysbio/46.3.523
10.1016/j.tpb.2014.12.006
10.1093/molbev/msr048
10.1093/bib/bbn013
10.1111/j.1365-294X.2005.02553.x
10.1093/bioinformatics/btu121
10.1039/C7NP00052A
10.1016/0022-0981(89)90053-1
10.1016/j.ympev.2010.09.010
10.1073/pnas.0406166101
10.1086/302959
10.1007/s003380050242
10.1086/BBLv220n3p224
10.1007/s003380000086
10.14284/170
10.1128/AEM.01541-09
10.1890/07-1339.1
10.1038/nmeth.2109
10.1007/s00239-008-9069-5
10.1007/s00338-014-1179-5
10.1080/10635150600969898
10.1007/s003380050153
10.1111/j.1744-7410.2009.00179.x
10.1126/science.223.4641.1186
10.1111/j.1471-8286.2007.01996.x
10.1016/j.micron.2009.08.009
10.1093/bioinformatics/btm233
10.1046/j.1365-294x.2000.01010.x
10.1371/journal.pone.0045555
10.1093/sysbio/syp055
10.1371/journal.pone.0030410
10.1371/journal.pone.0003240
10.1093/bioinformatics/btq110
10.1126/science.1069524
10.1007/BF00428562
10.1111/j.1365-294X.2004.02167.x
10.1007/s00338-011-0765-z
10.1093/bioinformatics/btl446
10.1371/journal.pbio.0020312
10.1371/journal.pone.0015021
10.3897/zookeys.272.4406
10.1016/j.cub.2018.07.008
10.1073/pnas.1607921114
10.6620/ZS.2018.57-50
10.1111/1755-0998.12736
10.1093/sysbio/syt032
10.1007/s003380050158
10.1371/journal.pcbi.1003537
10.1371/journal.pone.0198882
10.1093/oxfordjournals.molbev.a003916
10.1046/j.1365-294X.2002.01527.x
10.1038/s41598-017-06085-3
10.1016/0022-0981(94)90222-4
10.1093/molbev/mss086
10.1016/j.ympev.2015.03.022
10.1186/1471-2148-9-45
10.1093/sysbio/syu018
10.1080/01621459.1995.10476572
10.1126/science.1188021
10.1007/s003380100151
10.1038/s41598-018-37696-z
10.1046/j.1365-294X.2003.01808.x
10.3354/meps09414
10.1111/evo.12758
10.1007/s002270100540
10.1186/1471-2148-7-122
10.1007/BF02207848
10.1016/j.dsr.2016.08.014
10.1016/j.ympev.2016.03.010
10.1007/BF00409597
10.3354/meps060185
10.1007/s00338-016-1528-7
10.1086/682363
10.1525/auk.2011.128.4.620
10.1371/journal.pone.0017288
10.1007/BF00304420
10.1046/j.1471-8286.2003.00566.x
10.1146/annurev.ecolsys.37.091305.110136
10.1186/1471-2148-14-135
10.1186/s12859-017-1593-0
10.1111/j.0014-3820.2004.tb01648.x
10.1038/hdy.2014.105
10.1126/science.aad0408
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Issue 1
Keywords Coral reefs
Octocorallia
Taxonomy
Anthozoa
Phylogenetics
Hybridization
RADSeq
Language English
License Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
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References AM Quattrini (1427_CR83) 2018; 18
J Verseveldt (1427_CR111) 1980; 179
DA Eaton (1427_CR24) 2014; 30
RC Babcock (1427_CR2) 1986; 90
ZH Forsman (1427_CR36) 2009; 9
S Lin (1427_CR65) 2015; 350
Y Benayahu (1427_CR7) 2012; 51
JF Bruno (1427_CR12) 2001; 20
JA Sánchez (1427_CR93) 2007; 7
C Prada (1427_CR81) 2014; 33
VZ Radice (1427_CR85) 2016; 116
T Jombart (1427_CR54) 2015
D Bryant (1427_CR13) 2012; 29
CR Wylie (1427_CR116) 1989; 129
S Federman (1427_CR34) 2018; 13
BL Willis (1427_CR114) 2006; 37
CS McFadden (1427_CR72) 2014; 33
1427_CR22
J Sukumaran (1427_CR103) 2017; 114
1427_CR28
EY Durand (1427_CR23) 2011; 28
LS Kubatko (1427_CR62) 2009; 58
M Hatta (1427_CR45) 1999; 16
Y Benayahu (1427_CR4) 1977; 30
JW Blunt (1427_CR9) 2018; 35
ZH Forsman (1427_CR37) 2010; 5
E Kim (1427_CR59) 2004; 530
RE Kass (1427_CR57) 1995; 90
WP Maddison (1427_CR66) 1997; 46
TL Shearer (1427_CR96) 2008; 8
SV Edwards (1427_CR29) 2007; 104
EC Johnston (1427_CR53) 2017; 7
FE Rheindt (1427_CR89) 2011; 128
K Katoh (1427_CR56) 2008; 9
R Schmieder (1427_CR95) 2011; 6
PD Hebert (1427_CR46) 2004; 101
ZD Dinesen (1427_CR21) 1983; 1
PA Marshall (1427_CR68) 2000; 19
J Felsenstein (1427_CR35) 2005
1427_CR31
RH Richmond (1427_CR88) 1990; 60
PL Harrison (1427_CR44) 1984; 223
SV Vollmer (1427_CR112) 2002; 296
PD Hebert (1427_CR47) 2004; 2
E Shoham (1427_CR98) 2019; 9
M Currat (1427_CR18) 2008; 62
CS McFadden (1427_CR71) 2011; 11
D Darriba (1427_CR19) 2012; 9
A Rambaut (1427_CR86) 2007
LS Kubatko (1427_CR61) 2007; 56
MV van Oppen (1427_CR107) 2000; 9
M Slattery (1427_CR100) 2001; 138
TC LaJeunesse (1427_CR63) 2018; 28
DA Paz-García (1427_CR80) 2015; 186
LP van Ofwegen (1427_CR78) 2016; 581
M Jakobsson (1427_CR51) 2007; 23
E Shoham (1427_CR97) 2017; 36
R Bouckaert (1427_CR11) 2014; 10
SE Kahng (1427_CR55) 2011; 443
LP van Ofwegen (1427_CR75) 2002; 1
CS McFadden (1427_CR73) 2017; 112
JM Carlo (1427_CR14) 2011; 220
Z.H. Forsman (1427_CR38) 2017; 111
DA Eaton (1427_CR26) 2015; 69
KL Van Alstyne (1427_CR106) 1994; 178
S Keshavmurthy (1427_CR58) 2013; 3
K Fabricius (1427_CR33) 2001
1427_CR104
S Vargas (1427_CR110) 2010; 41
MJ Hickerson (1427_CR49) 2006; 55
ZT Richards (1427_CR87) 2008; 3
DAR Eaton (1427_CR27) 2016
VE Chhatre (1427_CR16) 2017; 18
Y Benayahu (1427_CR6) 2011; 50
1427_CR60
Y Benayahu (1427_CR5) 1995; 12
O Diekmann (1427_CR20) 2001; 139
AEW Manuputty (1427_CR67) 2007; 81
AR Baco (1427_CR3) 2012; 7
D Huang (1427_CR50) 2008; 66
NA Rosenberg (1427_CR91) 2004; 4
A Stamatakis (1427_CR102) 2006; 22
PR Frade (1427_CR39) 2010; 57
1427_CR115
RE Green (1427_CR43) 2010; 328
K Fabricius (1427_CR32) 1999; 18
MJ van Oppen (1427_CR108) 2001; 18
B Tursch (1427_CR105) 1982; 68
AD Leaché (1427_CR64) 2014; 63
J Catchen (1427_CR15) 2013; 22
SJ Rowley (1427_CR92) 2015; 3
M Slattery (1427_CR101) 2008; 78
LP van Ofwegen (1427_CR77) 2013; 272
MJ van Oppen (1427_CR109) 2002; 11
DJ Combosch (1427_CR17) 2015; 88
DJ Zwickl (1427_CR117) 2006
PD Schloss (1427_CR94) 2009; 75
DJ Miller (1427_CR74) 2003; 12
RR Bouckaert (1427_CR10) 2010; 26
AR Rogers (1427_CR90) 2015; 100
G Evanno (1427_CR30) 2005; 14
TL Goulet (1427_CR41) 2006; 154
JK Pritchard (1427_CR82) 2000; 67
CS McFadden (1427_CR69) 2004; 13
1427_CR84
M Slattery (1427_CR99) 1999; 18
BL Willis (1427_CR113) 1997; 16
M-S Jeng (1427_CR52) 2011; 30
S Herrera (1427_CR48) 2016; 100
1427_CR8
S Aratake (1427_CR1) 2012; 7
FC Gowen (1427_CR42) 2014; 14
E Pante (1427_CR79) 2015; 114
DA Eaton (1427_CR25) 2013; 62
H Fukami (1427_CR40) 2004; 58
LP van Ofwegen (1427_CR76) 2008; 82
CS McFadden (1427_CR70) 2009; 128
References_xml – volume: 139
  start-page: 221
  year: 2001
  ident: 1427_CR20
  publication-title: Mar Biol
  doi: 10.1007/s002270100584
– ident: 1427_CR104
  doi: 10.1101/440289
– volume: 581
  start-page: 71
  year: 2016
  ident: 1427_CR78
  publication-title: ZooKeys.
  doi: 10.3897/zookeys.581.7455
– ident: 1427_CR60
– volume: 56
  start-page: 17
  year: 2007
  ident: 1427_CR61
  publication-title: Syst Biol
  doi: 10.1080/10635150601146041
– volume: 111
  start-page: 132
  year: 2017
  ident: 1427_CR38
  publication-title: Molecular Phylogenetics and Evolution
  doi: 10.1016/j.ympev.2017.03.023
– volume-title: ipyRAD: interactive assembly and analysis of RADseq data sets
  year: 2016
  ident: 1427_CR27
– volume: 3
  start-page: 1520
  year: 2013
  ident: 1427_CR58
  publication-title: Sci Rep
  doi: 10.1038/srep01520
– volume: 112
  start-page: 174
  year: 2017
  ident: 1427_CR73
  publication-title: Mol Phylogenet Evol
  doi: 10.1016/j.ympev.2017.04.025
– volume: 50
  start-page: 350
  year: 2011
  ident: 1427_CR6
  publication-title: Zool Stud
– volume: 11
  start-page: 19
  year: 2011
  ident: 1427_CR71
  publication-title: Mol Ecol Resour
  doi: 10.1111/j.1755-0998.2010.02875.x
– volume: 3
  start-page: e1128
  year: 2015
  ident: 1427_CR92
  publication-title: PeerJ
  doi: 10.7717/peerj.1128
– volume: 16
  start-page: 1607
  year: 1999
  ident: 1427_CR45
  publication-title: Mol Biol Evol
  doi: 10.1093/oxfordjournals.molbev.a026073
– ident: 1427_CR31
– volume: 154
  start-page: 795
  year: 2006
  ident: 1427_CR41
  publication-title: Mar Biol
  doi: 10.1007/s00227-008-0972-5
– volume: 22
  start-page: 3124
  year: 2013
  ident: 1427_CR15
  publication-title: Mol Ecol
  doi: 10.1111/mec.12354
– volume: 12
  start-page: 103
  year: 1995
  ident: 1427_CR5
  publication-title: Galaxea
– volume: 1
  start-page: 167
  year: 2002
  ident: 1427_CR75
  publication-title: Proc 9th Intl Coral Reef Symp
– ident: 1427_CR22
  doi: 10.1017/CBO9781139095112
– volume: 104
  start-page: 5936
  year: 2007
  ident: 1427_CR29
  publication-title: PNAS.
  doi: 10.1073/pnas.0607004104
– volume: 46
  start-page: 523
  year: 1997
  ident: 1427_CR66
  publication-title: Syst Biol
  doi: 10.1093/sysbio/46.3.523
– volume: 100
  start-page: 63
  year: 2015
  ident: 1427_CR90
  publication-title: Theoretical Pop Biol
  doi: 10.1016/j.tpb.2014.12.006
– volume: 28
  start-page: 2239
  year: 2011
  ident: 1427_CR23
  publication-title: Mol Biol Evol
  doi: 10.1093/molbev/msr048
– volume: 9
  start-page: 286
  year: 2008
  ident: 1427_CR56
  publication-title: Brief Bioinform
  doi: 10.1093/bib/bbn013
– volume: 14
  start-page: 2611
  year: 2005
  ident: 1427_CR30
  publication-title: Mol Ecol
  doi: 10.1111/j.1365-294X.2005.02553.x
– volume: 30
  start-page: 1844
  year: 2014
  ident: 1427_CR24
  publication-title: Bioinformatics.
  doi: 10.1093/bioinformatics/btu121
– volume: 35
  start-page: 8
  year: 2018
  ident: 1427_CR9
  publication-title: Nat Prod Rep
  doi: 10.1039/C7NP00052A
– volume: 129
  start-page: 141
  year: 1989
  ident: 1427_CR116
  publication-title: J Mar Biol Ecol
  doi: 10.1016/0022-0981(89)90053-1
– volume: 57
  start-page: 1072
  year: 2010
  ident: 1427_CR39
  publication-title: Mol. Phyl. Evol.
  doi: 10.1016/j.ympev.2010.09.010
– volume: 101
  start-page: 14812
  year: 2004
  ident: 1427_CR46
  publication-title: PNAS.
  doi: 10.1073/pnas.0406166101
– volume: 67
  start-page: 170
  year: 2000
  ident: 1427_CR82
  publication-title: Am J Hum Genet
  doi: 10.1086/302959
– volume: 16
  start-page: S53
  year: 1997
  ident: 1427_CR113
  publication-title: Coral Reefs
  doi: 10.1007/s003380050242
– volume: 220
  start-page: 224
  year: 2011
  ident: 1427_CR14
  publication-title: Biol Bull
  doi: 10.1086/BBLv220n3p224
– volume: 19
  start-page: 155
  year: 2000
  ident: 1427_CR68
  publication-title: Coral Reefs
  doi: 10.1007/s003380000086
– volume: 82
  start-page: 631
  year: 2008
  ident: 1427_CR76
  publication-title: Zoologische Mededelingen Leiden
– ident: 1427_CR115
  doi: 10.14284/170
– volume: 33
  start-page: 275
  year: 2014
  ident: 1427_CR72
  publication-title: Coral Reefs
– volume: 75
  start-page: 7537
  year: 2009
  ident: 1427_CR94
  publication-title: Appl Environ Microbiol
  doi: 10.1128/AEM.01541-09
– volume: 78
  start-page: 423
  year: 2008
  ident: 1427_CR101
  publication-title: Ecol Monogr
  doi: 10.1890/07-1339.1
– volume: 9
  start-page: 772
  year: 2012
  ident: 1427_CR19
  publication-title: Nat Methods
  doi: 10.1038/nmeth.2109
– ident: 1427_CR28
– volume: 66
  start-page: 167
  year: 2008
  ident: 1427_CR50
  publication-title: J Mol Evol
  doi: 10.1007/s00239-008-9069-5
– volume: 33
  start-page: 1019
  year: 2014
  ident: 1427_CR81
  publication-title: Coral Reefs
  doi: 10.1007/s00338-014-1179-5
– volume: 55
  start-page: 729
  year: 2006
  ident: 1427_CR49
  publication-title: Syst Biol
  doi: 10.1080/10635150600969898
– volume: 18
  start-page: 54
  year: 1999
  ident: 1427_CR32
  publication-title: Coral Reefs
  doi: 10.1007/s003380050153
– volume: 128
  start-page: 303
  year: 2009
  ident: 1427_CR70
  publication-title: Invertebr Biol
  doi: 10.1111/j.1744-7410.2009.00179.x
– volume: 223
  start-page: 1186
  year: 1984
  ident: 1427_CR44
  publication-title: Science
  doi: 10.1126/science.223.4641.1186
– volume: 8
  start-page: 247
  year: 2008
  ident: 1427_CR96
  publication-title: Mol Ecol Resour
  doi: 10.1111/j.1471-8286.2007.01996.x
– volume: 41
  start-page: 158
  year: 2010
  ident: 1427_CR110
  publication-title: Micron.
  doi: 10.1016/j.micron.2009.08.009
– volume: 23
  start-page: 1801
  year: 2007
  ident: 1427_CR51
  publication-title: Bioinformatics.
  doi: 10.1093/bioinformatics/btm233
– volume: 9
  start-page: 1363
  year: 2000
  ident: 1427_CR107
  publication-title: Mol Ecol
  doi: 10.1046/j.1365-294x.2000.01010.x
– volume: 7
  start-page: e45555
  year: 2012
  ident: 1427_CR3
  publication-title: PLoS One
  doi: 10.1371/journal.pone.0045555
– volume: 58
  start-page: 478
  year: 2009
  ident: 1427_CR62
  publication-title: Syst Biol
  doi: 10.1093/sysbio/syp055
– volume: 7
  start-page: e30410
  year: 2012
  ident: 1427_CR1
  publication-title: PLoS One
  doi: 10.1371/journal.pone.0030410
– volume: 3
  start-page: e3240
  year: 2008
  ident: 1427_CR87
  publication-title: PLoS One
  doi: 10.1371/journal.pone.0003240
– volume: 26
  start-page: 1372
  year: 2010
  ident: 1427_CR10
  publication-title: Bioinformatics.
  doi: 10.1093/bioinformatics/btq110
– volume: 530
  start-page: 423
  year: 2004
  ident: 1427_CR59
  publication-title: Hydrobiologia
– volume: 296
  start-page: 2023
  year: 2002
  ident: 1427_CR112
  publication-title: Science.
  doi: 10.1126/science.1069524
– volume: 179
  start-page: 1
  year: 1980
  ident: 1427_CR111
  publication-title: Zoologische Verhandelingen
– volume: 90
  start-page: 379
  year: 1986
  ident: 1427_CR2
  publication-title: Mar Biol
  doi: 10.1007/BF00428562
– volume: 62
  start-page: 1908
  year: 2008
  ident: 1427_CR18
  publication-title: Evolution.
– volume: 13
  start-page: 1495
  year: 2004
  ident: 1427_CR69
  publication-title: Mol Ecol
  doi: 10.1111/j.1365-294X.2004.02167.x
– volume: 30
  start-page: 925
  year: 2011
  ident: 1427_CR52
  publication-title: Coral Reefs
  doi: 10.1007/s00338-011-0765-z
– volume: 22
  start-page: 2688
  year: 2006
  ident: 1427_CR102
  publication-title: Bioinformatics.
  doi: 10.1093/bioinformatics/btl446
– volume: 2
  start-page: e312
  year: 2004
  ident: 1427_CR47
  publication-title: PLoS Biol
  doi: 10.1371/journal.pbio.0020312
– volume: 5
  start-page: e15021
  year: 2010
  ident: 1427_CR37
  publication-title: PLoS One
  doi: 10.1371/journal.pone.0015021
– volume-title: GARLI: genetic algorithm for rapid likelihood inference
  year: 2006
  ident: 1427_CR117
– volume: 272
  start-page: 29
  year: 2013
  ident: 1427_CR77
  publication-title: ZooKeys.
  doi: 10.3897/zookeys.272.4406
– volume: 28
  start-page: 2570
  year: 2018
  ident: 1427_CR63
  publication-title: Curr Biol
  doi: 10.1016/j.cub.2018.07.008
– volume: 114
  start-page: 1607
  year: 2017
  ident: 1427_CR103
  publication-title: PNAS.
  doi: 10.1073/pnas.1607921114
– ident: 1427_CR84
– ident: 1427_CR8
  doi: 10.6620/ZS.2018.57-50
– volume-title: A tutorial for discriminant analysis of principal components DAPC using adegenet
  year: 2015
  ident: 1427_CR54
– volume: 18
  start-page: 281
  year: 2018
  ident: 1427_CR83
  publication-title: Mol Ecol Resour
  doi: 10.1111/1755-0998.12736
– volume: 62
  start-page: 689
  year: 2013
  ident: 1427_CR25
  publication-title: Syst Biol
  doi: 10.1093/sysbio/syt032
– volume: 18
  start-page: 75
  year: 1999
  ident: 1427_CR99
  publication-title: Coral Reefs
  doi: 10.1007/s003380050158
– volume: 10
  start-page: e1003537
  issue: 4
  year: 2014
  ident: 1427_CR11
  publication-title: PLoS Comp Biol
  doi: 10.1371/journal.pcbi.1003537
– volume: 13
  start-page: e0198882
  issue: 6
  year: 2018
  ident: 1427_CR34
  publication-title: PLoS One
  doi: 10.1371/journal.pone.0198882
– volume: 18
  start-page: 1315
  year: 2001
  ident: 1427_CR108
  publication-title: Mol Biol Evol
  doi: 10.1093/oxfordjournals.molbev.a003916
– volume: 11
  start-page: 1363
  year: 2002
  ident: 1427_CR109
  publication-title: Mol Ecol
  doi: 10.1046/j.1365-294X.2002.01527.x
– start-page: 2012
  volume-title: Tracer v1.4
  year: 2007
  ident: 1427_CR86
– volume: 7
  start-page: 5991
  year: 2017
  ident: 1427_CR53
  publication-title: Sci Rep
  doi: 10.1038/s41598-017-06085-3
– volume: 51
  start-page: 1529
  year: 2012
  ident: 1427_CR7
  publication-title: Zool Stud
– volume: 178
  start-page: 17
  year: 1994
  ident: 1427_CR106
  publication-title: J Mar Biol Ecol
  doi: 10.1016/0022-0981(94)90222-4
– volume: 29
  start-page: 1917
  year: 2012
  ident: 1427_CR13
  publication-title: Mol Biol Evol
  doi: 10.1093/molbev/mss086
– volume: 88
  start-page: 154
  year: 2015
  ident: 1427_CR17
  publication-title: Mol Phylogenet Evol
  doi: 10.1016/j.ympev.2015.03.022
– volume: 9
  start-page: 45
  year: 2009
  ident: 1427_CR36
  publication-title: BMC Evol Biol
  doi: 10.1186/1471-2148-9-45
– volume: 63
  start-page: 534
  year: 2014
  ident: 1427_CR64
  publication-title: Syst Biol
  doi: 10.1093/sysbio/syu018
– volume-title: PHYLIP phylogeny inference package Distributed by the author
  year: 2005
  ident: 1427_CR35
– volume: 90
  start-page: 773
  year: 1995
  ident: 1427_CR57
  publication-title: J Am Stat Assoc
  doi: 10.1080/01621459.1995.10476572
– volume: 328
  start-page: 710
  year: 2010
  ident: 1427_CR43
  publication-title: Science
  doi: 10.1126/science.1188021
– volume: 20
  start-page: 127
  year: 2001
  ident: 1427_CR12
  publication-title: Coral Reefs
  doi: 10.1007/s003380100151
– volume: 9
  start-page: 1241
  year: 2019
  ident: 1427_CR98
  publication-title: Sci Rep
  doi: 10.1038/s41598-018-37696-z
– volume: 81
  start-page: 187
  year: 2007
  ident: 1427_CR67
  publication-title: Zoologische Mededelingen Leiden
– volume: 12
  start-page: 805
  year: 2003
  ident: 1427_CR74
  publication-title: Mol Ecol
  doi: 10.1046/j.1365-294X.2003.01808.x
– volume: 443
  start-page: 265
  year: 2011
  ident: 1427_CR55
  publication-title: Mar Ecol Prog Ser
  doi: 10.3354/meps09414
– volume: 69
  start-page: 2587
  year: 2015
  ident: 1427_CR26
  publication-title: Evolution.
  doi: 10.1111/evo.12758
– volume: 138
  start-page: 1183
  year: 2001
  ident: 1427_CR100
  publication-title: Mar Biol
  doi: 10.1007/s002270100540
– volume: 7
  start-page: 122
  year: 2007
  ident: 1427_CR93
  publication-title: BMC Evol Biol
  doi: 10.1186/1471-2148-7-122
– volume-title: Soft corals and sea fans: a comprehensive guide to the tropical shallow-water genera of the central West-Pacific the Indian Ocean and the Red Sea
  year: 2001
  ident: 1427_CR33
– volume: 30
  start-page: 362
  year: 1977
  ident: 1427_CR4
  publication-title: Helgoländer Meeresun
  doi: 10.1007/BF02207848
– volume: 116
  start-page: 253
  year: 2016
  ident: 1427_CR85
  publication-title: Deep Sea Res I
  doi: 10.1016/j.dsr.2016.08.014
– volume: 100
  start-page: 70
  year: 2016
  ident: 1427_CR48
  publication-title: Mol Phyl Evol.
  doi: 10.1016/j.ympev.2016.03.010
– volume: 68
  start-page: 321
  year: 1982
  ident: 1427_CR105
  publication-title: Mar Biol
  doi: 10.1007/BF00409597
– volume: 60
  start-page: 185
  year: 1990
  ident: 1427_CR88
  publication-title: Mar Ecol Prog Ser
  doi: 10.3354/meps060185
– volume: 36
  start-page: 71
  year: 2017
  ident: 1427_CR97
  publication-title: Coral Reefs
  doi: 10.1007/s00338-016-1528-7
– volume: 186
  start-page: 434
  year: 2015
  ident: 1427_CR80
  publication-title: Am Nat
  doi: 10.1086/682363
– volume: 128
  start-page: 620
  year: 2011
  ident: 1427_CR89
  publication-title: Auk
  doi: 10.1525/auk.2011.128.4.620
– volume: 6
  start-page: e17288
  year: 2011
  ident: 1427_CR95
  publication-title: PLoS One
  doi: 10.1371/journal.pone.0017288
– volume: 1
  start-page: 229
  year: 1983
  ident: 1427_CR21
  publication-title: Coral Reefs
  doi: 10.1007/BF00304420
– volume: 4
  start-page: 137
  year: 2004
  ident: 1427_CR91
  publication-title: Mol Ecol Notes
  doi: 10.1046/j.1471-8286.2003.00566.x
– volume: 37
  start-page: 489
  year: 2006
  ident: 1427_CR114
  publication-title: Annu Rev Ecol Evol Syst
  doi: 10.1146/annurev.ecolsys.37.091305.110136
– volume: 14
  start-page: 135
  year: 2014
  ident: 1427_CR42
  publication-title: BMC Evol Biol
  doi: 10.1186/1471-2148-14-135
– volume: 18
  start-page: 192
  year: 2017
  ident: 1427_CR16
  publication-title: BMC Bioinf
  doi: 10.1186/s12859-017-1593-0
– volume: 58
  start-page: 324
  year: 2004
  ident: 1427_CR40
  publication-title: Evolution.
  doi: 10.1111/j.0014-3820.2004.tb01648.x
– volume: 114
  start-page: 450
  year: 2015
  ident: 1427_CR79
  publication-title: Heredity
  doi: 10.1038/hdy.2014.105
– volume: 350
  start-page: 691
  year: 2015
  ident: 1427_CR65
  publication-title: Science.
  doi: 10.1126/science.aad0408
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Snippet Our ability to investigate processes shaping the evolutionary diversification of corals (Cnidaria: Anthozoa) is limited by a lack of understanding of species...
Background Our ability to investigate processes shaping the evolutionary diversification of corals (Cnidaria: Anthozoa) is limited by a lack of understanding...
Abstract Background Our ability to investigate processes shaping the evolutionary diversification of corals (Cnidaria: Anthozoa) is limited by a lack of...
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SubjectTerms Admixtures
Animals
Anthozoa
Anthozoa - classification
Anthozoa - genetics
Bar codes
Biodiversity
Boundaries
Coalescence
Coalescing
Coral reefs
Corals
Cryptic species
Deoxyribonucleic acid
Discriminant Analysis
DNA
DNA Barcoding, Taxonomic
DNA sequencing
Evolution
Gene frequency
Genetic aspects
Genetic distance
Genetic research
Genetics
Haplotypes
Hybridization
Hybridization, Genetic
Laboratories
Likelihood Functions
Markers
Metabolites
Morphology
Phylogenetics
Phylogeny
Principal Component Analysis
RADSeq
Reefs
Sequence Analysis, DNA
Sinularia
Species
Species Specificity
Taxonomy
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Title A next generation approach to species delimitation reveals the role of hybridization in a cryptic species complex of corals
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Volume 19
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