The genome of the extremophile crucifer Thellungiella parvula

Dong-Ha Oh and colleagues report the draft genome of the extremophile crucifer plant Thellungiella parvula . This species is endemic to highly saline environments subject to extreme temperatures. The genome was primarily assembled using next-generation sequencing data. Thellungiella parvula 1 is rel...

Full description

Saved in:
Bibliographic Details
Published inNature genetics Vol. 43; no. 9; pp. 913 - 918
Main Authors Dassanayake, Maheshi, Oh, Dong-Ha, Haas, Jeffrey S, Hernandez, Alvaro, Hong, Hyewon, Ali, Shahjahan, Yun, Dae-Jin, Bressan, Ray A, Zhu, Jian-Kang, Bohnert, Hans J, Cheeseman, John M
Format Journal Article
LanguageEnglish
Published New York Nature Publishing Group US 01.09.2011
Nature Publishing Group
Subjects
631/181/2474
631/208/212/748
631/449/2661
Agriculture
Animal Genetics and Genomics
Arabidopsis thaliana
Bacteria
Base Sequence
Biological and medical sciences
Biomedical and Life Sciences
Biomedicine
Brassicaceae - genetics
Cancer Research
Chromosomes
Chromosomes, Plant - genetics
Colleges & universities
Environmental stress
Evolution
Fundamental and applied biological sciences. Psychology
Gene Function
Genetics
Genetics of eukaryotes. Biological and molecular evolution
Genome, Plant
Genomes
Genomics
Human Genetics
letter
Molecular Sequence Data
Physiological aspects
Plants
Rural development
Salinity
Stress, Physiological - genetics
Tandem Repeat Sequences
Thellungiella
United States
Genome
Online AccessGet full text

Cover

Abstract Dong-Ha Oh and colleagues report the draft genome of the extremophile crucifer plant Thellungiella parvula . This species is endemic to highly saline environments subject to extreme temperatures. The genome was primarily assembled using next-generation sequencing data. Thellungiella parvula 1 is related to Arabidopsis thaliana and is endemic to saline, resource-poor habitats 2 , making it a model for the evolution of plant adaptation to extreme environments. Here we present the draft genome for this extremophile species. Exclusively by next generation sequencing, we obtained the de novo assembled genome in 1,496 gap-free contigs, closely approximating the estimated genome size of 140 Mb. We anchored these contigs to seven pseudo chromosomes without the use of maps. We show that short reads can be assembled to a near-complete chromosome level for a eukaryotic species lacking prior genetic information. The sequence identifies a number of tandem duplications that, by the nature of the duplicated genes, suggest a possible basis for T. parvula 's extremophile lifestyle. Our results provide essential background for developing genomically influenced testable hypotheses for the evolution of environmental stress tolerance.
AbstractList Thellungiella parvula is related to Arabidopsis thaliana and is endemic to saline, resource-poor habitats, making it a model for the evolution of plant adaptation to extreme environments. Here we present the draft genome for this extremophile species. Exclusively by next generation sequencing, we obtained the de novo assembled genome in 1,496 gap-free contigs, closely approximating the estimated genome size of 140 Mb. We anchored these contigs to seven pseudo chromosomes without the use of maps. We show that short reads can be assembled to a near-complete chromosome level for a eukaryotic species lacking prior genetic information. The sequence identifies a number of tandem duplications that, by the nature of the duplicated genes, suggest a possible basis for T. parvula's extremophile lifestyle. Our results provide essential background for developing genomically influenced testable hypotheses for the evolution of environmental stress tolerance.
Dong-Ha Oh and colleagues report the draft genome of the extremophile crucifer plant Thellungiella parvula . This species is endemic to highly saline environments subject to extreme temperatures. The genome was primarily assembled using next-generation sequencing data. Thellungiella parvula 1 is related to Arabidopsis thaliana and is endemic to saline, resource-poor habitats 2 , making it a model for the evolution of plant adaptation to extreme environments. Here we present the draft genome for this extremophile species. Exclusively by next generation sequencing, we obtained the de novo assembled genome in 1,496 gap-free contigs, closely approximating the estimated genome size of 140 Mb. We anchored these contigs to seven pseudo chromosomes without the use of maps. We show that short reads can be assembled to a near-complete chromosome level for a eukaryotic species lacking prior genetic information. The sequence identifies a number of tandem duplications that, by the nature of the duplicated genes, suggest a possible basis for T. parvula 's extremophile lifestyle. Our results provide essential background for developing genomically influenced testable hypotheses for the evolution of environmental stress tolerance.
Thellungiella parvula 1 is related to Arabidopsis thaliana and is endemic to saline, resource-poor habitats 2 , making it a model for the evolution of plant adaptation to extreme environments. Here we present the draft genome for this extremophile species. Exclusively by next generation sequencing, we obtained the de novo assembled genome in 1,496 gap-free contigs, closely approximating the estimated genome size of 140 Mb. We anchored these contigs to seven pseudo chromosomes without the use of maps. We show that short reads can be assembled to a near-complete chromosome level for a eukaryotic species lacking prior genetic information. The sequence identifies a number of tandem duplications that, by the nature of the duplicated genes, suggest a possible basis for T. parvula ’s extremophile lifestyle. Our results provide essential background for developing genomically influenced testable hypotheses for the evolution of environmental stress tolerance.
Thellungiella parvula is related to Arabidopsis thaliana and is endemic to saline, resource-poor habitats, making it a model for the evolution of plant adaptation to extreme environments. Here we present the draft genome for this extremophile species. Exclusively by next generation sequencing, we obtained the de novo assembled genome in 1,496 gap-free contigs, closely approximating the estimated genome size of 140 Mb. We anchored these contigs to seven pseudo chromosomes without the use of maps. We show that short reads can be assembled to a near-complete chromosome level for a eukaryotic species lacking prior genetic information. The sequence identifies a number of tandem duplications that, by the nature of the duplicated genes, suggest a possible basis for T. parvula's extremophile lifestyle. Our results provide essential background for developing genomically influenced testable hypotheses for the evolution of environmental stress tolerance. [PUBLICATION ABSTRACT]
Thellungiella parvula (1) is related to Arabidopsis thaliana and is endemic to saline, resource-poor habitats (2), making it a model for the evolution of plant adaptation to extreme environments. Here we present the draft genome for this extremophile species. Exclusively by next generation sequencing, we obtained the de novo assembled genome in 1,496 gap-free contigs, closely approximating the estimated genome size of 140 Mb. We anchored these contigs to seven pseudo chromosomes without the use of maps. We show that short reads can be assembled to a near-complete chromosome level for a eukaryotic species lacking prior genetic information. The sequence identifies a number of tandem duplications that, by the nature of the duplicated genes, suggest a possible basis for T. parvula's extremophile lifestyle. Our results provide essential background for developing genomically influenced testable hypotheses for the evolution of environmental stress tolerance.
Thellungiella parvula is related to Arabidopsis thaliana and is endemic to saline, resource-poor habitats, making it a model for the evolution of plant adaptation to extreme environments. Here we present the draft genome for this extremophile species. Exclusively by next generation sequencing, we obtained the de novo assembled genome in 1,496 gap-free contigs, closely approximating the estimated genome size of 140 Mb. We anchored these contigs to seven pseudo chromosomes without the use of maps. We show that short reads can be assembled to a near-complete chromosome level for a eukaryotic species lacking prior genetic information. The sequence identifies a number of tandem duplications that, by the nature of the duplicated genes, suggest a possible basis for T. parvula's extremophile lifestyle. Our results provide essential background for developing genomically influenced testable hypotheses for the evolution of environmental stress tolerance.Thellungiella parvula is related to Arabidopsis thaliana and is endemic to saline, resource-poor habitats, making it a model for the evolution of plant adaptation to extreme environments. Here we present the draft genome for this extremophile species. Exclusively by next generation sequencing, we obtained the de novo assembled genome in 1,496 gap-free contigs, closely approximating the estimated genome size of 140 Mb. We anchored these contigs to seven pseudo chromosomes without the use of maps. We show that short reads can be assembled to a near-complete chromosome level for a eukaryotic species lacking prior genetic information. The sequence identifies a number of tandem duplications that, by the nature of the duplicated genes, suggest a possible basis for T. parvula's extremophile lifestyle. Our results provide essential background for developing genomically influenced testable hypotheses for the evolution of environmental stress tolerance.
Audience Academic
Author Hernandez, Alvaro
Bressan, Ray A
Haas, Jeffrey S
Ali, Shahjahan
Oh, Dong-Ha
Yun, Dae-Jin
Zhu, Jian-Kang
Dassanayake, Maheshi
Cheeseman, John M
Hong, Hyewon
Bohnert, Hans J
AuthorAffiliation 2 Office of Networked Information Technology, School of Integrative Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA
5 Bioscience Core Laboratory-Genomics, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia
4 Division of Applied Life Science (BK21 program), Gyeongsang National University, Jinju, Korea
1 Department of Plant Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA
8 Department of Crop Sciences, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA
3 Center for Comparative & Functional Genomics, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA
7 Center for Plant Stress Genomics and Biotechnology, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia
6 Department of Horticulture & Landscape Architecture, Purdue University, West Lafayette, Indiana, USA
AuthorAffiliation_xml – name: 5 Bioscience Core Laboratory-Genomics, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia
– name: 7 Center for Plant Stress Genomics and Biotechnology, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia
– name: 3 Center for Comparative & Functional Genomics, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA
– name: 8 Department of Crop Sciences, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA
– name: 4 Division of Applied Life Science (BK21 program), Gyeongsang National University, Jinju, Korea
– name: 2 Office of Networked Information Technology, School of Integrative Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA
– name: 6 Department of Horticulture & Landscape Architecture, Purdue University, West Lafayette, Indiana, USA
– name: 1 Department of Plant Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA
Author_xml – sequence: 1
  givenname: Maheshi
  surname: Dassanayake
  fullname: Dassanayake, Maheshi
  email: maheshi.dassanayake@gmail.com
  organization: Department of Plant Biology, University of Illinois at Urbana-Champaign
– sequence: 2
  givenname: Dong-Ha
  surname: Oh
  fullname: Oh, Dong-Ha
  email: ohdongha@gmail.com
  organization: Department of Plant Biology, University of Illinois at Urbana-Champaign
– sequence: 3
  givenname: Jeffrey S
  surname: Haas
  fullname: Haas, Jeffrey S
  organization: Department of Plant Biology, University of Illinois at Urbana-Champaign, Office of Networked Information Technology, School of Integrative Biology, University of Illinois at Urbana-Champaign
– sequence: 4
  givenname: Alvaro
  surname: Hernandez
  fullname: Hernandez, Alvaro
  organization: Center for Comparative & Functional Genomics, University of Illinois at Urbana-Champaign
– sequence: 5
  givenname: Hyewon
  surname: Hong
  fullname: Hong, Hyewon
  organization: Department of Plant Biology, University of Illinois at Urbana-Champaign, Division of Applied Life Science (BK21 program), Gyeongsang National University
– sequence: 6
  givenname: Shahjahan
  surname: Ali
  fullname: Ali, Shahjahan
  organization: Bioscience Core Laboratory-Genomics, King Abdullah University of Science and Technology
– sequence: 7
  givenname: Dae-Jin
  surname: Yun
  fullname: Yun, Dae-Jin
  email: djyun@gnu.ac.kr
  organization: Division of Applied Life Science (BK21 program), Gyeongsang National University
– sequence: 8
  givenname: Ray A
  surname: Bressan
  fullname: Bressan, Ray A
  organization: Division of Applied Life Science (BK21 program), Gyeongsang National University, Department of Horticulture & Landscape Architecture, Purdue University, Center for Plant Stress Genomics and Biotechnology, King Abdullah University of Science and Technology
– sequence: 9
  givenname: Jian-Kang
  surname: Zhu
  fullname: Zhu, Jian-Kang
  organization: Department of Horticulture & Landscape Architecture, Purdue University, Center for Plant Stress Genomics and Biotechnology, King Abdullah University of Science and Technology
– sequence: 10
  givenname: Hans J
  surname: Bohnert
  fullname: Bohnert, Hans J
  organization: Department of Plant Biology, University of Illinois at Urbana-Champaign, Division of Applied Life Science (BK21 program), Gyeongsang National University, Center for Plant Stress Genomics and Biotechnology, King Abdullah University of Science and Technology, Department of Crop Sciences, University of Illinois at Urbana-Champaign
– sequence: 11
  givenname: John M
  surname: Cheeseman
  fullname: Cheeseman, John M
  organization: Department of Plant Biology, University of Illinois at Urbana-Champaign
BackLink http://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=24566419$$DView record in Pascal Francis
https://www.ncbi.nlm.nih.gov/pubmed/21822265$$D View this record in MEDLINE/PubMed
BookMark eNqN0v1r1DAYB_AgE7ed-idIUXwDeyZpmj39QWEMXwaDgU5_DWku7WW0yZm0Y_vvfcrdnHeKSKFp6ScP7ffbQ7Lng7eEPGZ0zmgBb307B6jukQNWCpmzIwZ7eE0lywUt5D45TOmSUiYEhQdknzPgnMvygLy7WNqstT70NgtNNuCdvR6i7cNq6TqbmTga19iYoeu60bcOF52tdLwaO_2Q3G90l-yjzToj3z5-uDj5nJ-dfzo9OT7LjQQYcgNgdFHSkmmuZYVnVlOzqEVleNlwyRdiQakuGFQ1F0A5tRXUUBghZNNIU8zI-_Xc1Vj3dmGsH6Lu1Cq6XscbFbRT20-8W6o2XKmiBAmM44CXmwEx_BhtGlTvkpk-xdswJgVQVowCRjkjr_4pkQjgFIoC6dMdehnG6DEIBZVgXPCyRPRsjVrdWeV8E_AFzTRTHXN5JLAHKlDN_6LwWNjeGay6wTK2N7ze2oBmwOJaPaakTr9--X97_n3bPvk96V8R3_4xCJ5vgE5Gd03U3rh050QppWAVujdrZ2JIKdpGGTfowYWpINdhjlOUoHyL4U_8xQ6_nfgH3DSZEPjWxrvQd-RP15L0ow
CODEN NGENEC
CitedBy_id crossref_primary_10_1111_mec_16329
crossref_primary_10_1002_pmic_201200401
crossref_primary_10_1038_srep29404
crossref_primary_10_1093_jxb_ers260
crossref_primary_10_1038_nplants_2014_23
crossref_primary_10_1186_s13059_015_0814_y
crossref_primary_10_1093_plcell_koad260
crossref_primary_10_1002_pld3_32
crossref_primary_10_1104_pp_111_193110
crossref_primary_10_1038_sdata_2016_131
crossref_primary_10_1038_ncomms3640
crossref_primary_10_1093_gbe_evad034
crossref_primary_10_1111_aab_12496
crossref_primary_10_1038_s41467_024_45836_5
crossref_primary_10_3390_biom12111583
crossref_primary_10_1111_jipb_12439
crossref_primary_10_1016_j_gpb_2018_07_009
crossref_primary_10_3389_fpls_2018_00161
crossref_primary_10_1016_j_envexpbot_2015_11_010
crossref_primary_10_1093_dnares_dsad011
crossref_primary_10_1111_mec_14930
crossref_primary_10_3389_fpls_2018_00950
crossref_primary_10_1093_gbe_evw058
crossref_primary_10_1371_journal_pgen_1007267
crossref_primary_10_1186_1471_2164_14_578
crossref_primary_10_1038_srep11422
crossref_primary_10_1104_pp_111_189514
crossref_primary_10_1016_j_pbi_2012_01_001
crossref_primary_10_1111_pbi_13680
crossref_primary_10_1016_j_pbi_2012_01_002
crossref_primary_10_1007_s10725_014_0007_9
crossref_primary_10_1111_ppl_13166
crossref_primary_10_1093_jxb_eraa336
crossref_primary_10_3390_ijms241713626
crossref_primary_10_1186_s12864_016_3319_5
crossref_primary_10_1111_j_1744_7909_2012_01115_x
crossref_primary_10_1016_j_plaphy_2013_04_009
crossref_primary_10_1186_1471_2164_14_793
crossref_primary_10_1292_jvms_19_0218
crossref_primary_10_1093_gbe_evx259
crossref_primary_10_4161_psb_25196
crossref_primary_10_1038_srep45226
crossref_primary_10_1016_j_envexpbot_2020_104236
crossref_primary_10_1007_s10142_016_0484_1
crossref_primary_10_1093_plcell_koac166
crossref_primary_10_1111_jse_12289
crossref_primary_10_1139_cjb_2018_0202
crossref_primary_10_9787_KJBS_2020_52_4_297
crossref_primary_10_1016_j_plaphy_2018_09_024
crossref_primary_10_3389_fpls_2022_955589
crossref_primary_10_1007_s40502_018_0422_4
crossref_primary_10_4236_abb_2012_34054
crossref_primary_10_1007_s11816_020_00600_1
crossref_primary_10_1186_s12870_024_05288_x
crossref_primary_10_1093_aob_mcu152
crossref_primary_10_3390_ijms20051059
crossref_primary_10_1093_database_bav093
crossref_primary_10_1016_j_xplc_2022_100464
crossref_primary_10_1371_journal_pone_0036442
crossref_primary_10_3389_fpls_2021_772655
crossref_primary_10_1007_s11816_012_0249_9
crossref_primary_10_1186_1471_2229_12_131
crossref_primary_10_1111_tpj_16043
crossref_primary_10_1371_journal_pone_0108785
crossref_primary_10_1016_j_pbiomolbio_2018_12_002
crossref_primary_10_1093_jxb_erv331
crossref_primary_10_3390_plants13141902
crossref_primary_10_1111_tpj_15997
crossref_primary_10_1016_S2095_3119_21_63747_4
crossref_primary_10_1038_ncomms5104
crossref_primary_10_1007_s00425_020_03366_6
crossref_primary_10_1111_jeb_12372
crossref_primary_10_1093_pcp_pcy231
crossref_primary_10_3389_fpls_2023_1137211
crossref_primary_10_1080_17429145_2018_1526979
crossref_primary_10_1093_molbev_msv042
crossref_primary_10_1093_dnares_dsy035
crossref_primary_10_3389_fpls_2019_00196
crossref_primary_10_1111_nph_14784
crossref_primary_10_1016_j_pbi_2016_02_005
crossref_primary_10_1016_j_plgene_2023_100424
crossref_primary_10_1093_database_bat014
crossref_primary_10_1105_tpc_113_110486
crossref_primary_10_1111_j_1365_313X_2012_04894_x
crossref_primary_10_3389_fpls_2017_00324
crossref_primary_10_1111_nph_15194
crossref_primary_10_1186_1471_2229_13_180
crossref_primary_10_1093_gbe_evv206
crossref_primary_10_1016_j_xinn_2020_100017
crossref_primary_10_1111_pbi_13086
crossref_primary_10_3389_fpls_2021_791219
crossref_primary_10_1038_ncomms12399
crossref_primary_10_1093_molbev_msw020
crossref_primary_10_1111_nph_13217
crossref_primary_10_1371_journal_pgen_1003707
crossref_primary_10_1007_s11356_014_3739_1
crossref_primary_10_1186_s12864_020_07042_7
crossref_primary_10_1371_journal_pcbi_1008318
crossref_primary_10_1186_s13059_019_1650_2
crossref_primary_10_4161_mge_19348
crossref_primary_10_1093_aob_mcu184
crossref_primary_10_3389_fpls_2018_00543
crossref_primary_10_1105_tpc_114_124297
crossref_primary_10_1073_pnas_2025711118
crossref_primary_10_3389_fpls_2023_1305299
crossref_primary_10_1111_tpj_16396
crossref_primary_10_1073_pnas_1209954109
crossref_primary_10_1111_mec_13221
crossref_primary_10_1016_j_plaphy_2021_01_029
crossref_primary_10_1007_s10265_018_1053_6
crossref_primary_10_1073_pnas_1817580116
crossref_primary_10_1270_jsbbs_64_3
crossref_primary_10_3389_fpls_2017_01878
crossref_primary_10_1080_17550874_2012_716868
crossref_primary_10_1093_g3journal_jkaf022
crossref_primary_10_1038_s41598_018_31518_y
crossref_primary_10_1074_mcp_M112_022475
crossref_primary_10_1155_2016_5283628
crossref_primary_10_1093_aob_mcu194
crossref_primary_10_1038_s41598_018_37815_w
crossref_primary_10_1016_j_ympev_2016_02_021
crossref_primary_10_1093_bioinformatics_bts586
crossref_primary_10_1111_tpj_16005
crossref_primary_10_1111_pce_12768
crossref_primary_10_1093_jxb_eraa031
crossref_primary_10_1093_molbev_msu152
crossref_primary_10_1002_ange_201704120
crossref_primary_10_1080_17550874_2012_745909
crossref_primary_10_1016_j_gene_2022_147124
crossref_primary_10_1016_j_envexpbot_2019_01_009
crossref_primary_10_1038_nplants_2016_167
crossref_primary_10_1038_s41438_020_00422_w
crossref_primary_10_1104_pp_112_195081
crossref_primary_10_1111_nph_17295
crossref_primary_10_1071_FP15288
crossref_primary_10_1071_FP15285
crossref_primary_10_1093_nar_gkt1000
crossref_primary_10_1186_gb4003
crossref_primary_10_1016_j_hpj_2016_02_001
crossref_primary_10_1038_ng_2684
crossref_primary_10_3390_ijms19113671
crossref_primary_10_1186_gb_2013_14_3_r29
crossref_primary_10_1371_journal_pone_0097189
crossref_primary_10_14348_molcells_2016_0083
crossref_primary_10_1038_s41477_018_0289_4
crossref_primary_10_1111_nph_12396
crossref_primary_10_1038_s41598_021_87047_8
crossref_primary_10_1111_pbi_13968
crossref_primary_10_1093_molbev_msv226
crossref_primary_10_1093_plphys_kiac564
crossref_primary_10_1186_s12870_019_1973_x
crossref_primary_10_1371_journal_pone_0094101
crossref_primary_10_1016_j_hpj_2020_04_005
crossref_primary_10_1016_j_gene_2013_01_034
crossref_primary_10_1038_ng_2470
crossref_primary_10_1007_s00122_014_2354_3
crossref_primary_10_1186_s12864_023_09256_x
crossref_primary_10_1093_gbe_evy053
crossref_primary_10_1016_j_cj_2021_06_006
crossref_primary_10_1016_j_pbi_2017_02_005
crossref_primary_10_1186_1471_2164_15_S6_S8
crossref_primary_10_1038_hortres_2014_24
crossref_primary_10_1111_ppa_13794
crossref_primary_10_1016_j_margen_2020_100740
crossref_primary_10_1093_nar_gkab1057
crossref_primary_10_1002_bies_201600113
crossref_primary_10_1104_pp_111_188920
crossref_primary_10_1038_ng_2343
crossref_primary_10_3389_fpls_2022_909527
crossref_primary_10_3389_fpls_2015_00018
crossref_primary_10_1111_nph_18873
crossref_primary_10_1186_gb_2012_13_3_241
crossref_primary_10_1371_journal_pone_0302292
crossref_primary_10_1155_2015_684321
crossref_primary_10_3389_fpls_2017_00713
crossref_primary_10_1104_pp_114_235952
crossref_primary_10_1186_s12915_021_01079_0
crossref_primary_10_1109_TCBB_2018_2849377
crossref_primary_10_1093_hr_uhad161
crossref_primary_10_1111_pce_12178
crossref_primary_10_32604_phyton_2021_012726
crossref_primary_10_1186_s12870_017_1112_5
crossref_primary_10_1371_journal_pone_0073588
crossref_primary_10_3390_ijms21176100
crossref_primary_10_1007_s11120_013_9813_6
crossref_primary_10_1016_j_pbi_2012_02_002
crossref_primary_10_1016_j_bbagrm_2015_12_005
crossref_primary_10_1007_s00344_024_11266_2
crossref_primary_10_1016_j_ygeno_2021_06_031
crossref_primary_10_1007_s00606_020_01727_y
crossref_primary_10_1038_s41477_022_01139_5
crossref_primary_10_1007_s11427_020_1662_x
crossref_primary_10_1002_anie_201704120
crossref_primary_10_1111_jse_12828
crossref_primary_10_1016_j_ympev_2016_03_031
crossref_primary_10_1111_tpj_13185
crossref_primary_10_1007_s11738_015_1954_0
crossref_primary_10_1016_j_plantsci_2024_112171
crossref_primary_10_1105_tpc_113_113480
crossref_primary_10_1016_j_jplph_2020_153293
crossref_primary_10_1038_s41477_018_0309_4
crossref_primary_10_1093_nar_gku986
crossref_primary_10_1038_nrg3883
crossref_primary_10_1080_07388551_2022_2093695
crossref_primary_10_3390_ijms160920468
crossref_primary_10_1139_gen_2024_0061
crossref_primary_10_1086_698482
crossref_primary_10_3389_fpls_2017_00381
crossref_primary_10_1016_j_envexpbot_2013_03_001
crossref_primary_10_1093_gbe_evaa220
crossref_primary_10_1371_journal_pone_0146764
crossref_primary_10_1186_gb_2012_13_8_166
crossref_primary_10_1016_j_envexpbot_2012_12_002
crossref_primary_10_1186_gb_2012_13_8_167
crossref_primary_10_1038_cr_2017_124
crossref_primary_10_1007_s11103_023_01348_2
crossref_primary_10_1038_s41477_019_0486_9
crossref_primary_10_3389_fpls_2015_00602
crossref_primary_10_1186_s13059_015_0867_y
crossref_primary_10_1093_gbe_evu290
crossref_primary_10_1016_j_envexpbot_2014_11_010
crossref_primary_10_1371_journal_pone_0137391
crossref_primary_10_1038_ncomms3797
crossref_primary_10_1002_ajb2_16310
crossref_primary_10_1016_j_jplph_2017_08_014
crossref_primary_10_3390_ijms14046757
crossref_primary_10_3389_fpls_2018_01108
crossref_primary_10_1186_1471_2229_14_2
crossref_primary_10_1016_j_pbi_2017_01_006
Cites_doi 10.1111/j.1365-3040.2009.02086.x
10.1105/tpc.108.062166
10.1093/bioinformatics/17.9.847
10.1093/jxb/erl090
10.1104/pp.104.041723
10.1186/gb-2009-10-3-r25
10.1186/1471-2105-8-64
10.1073/pnas.0909766107
10.1126/science.1197005
10.1073/pnas.0510791103
10.1101/gr.089532.108
10.1038/nature08670
10.1093/jxb/erq188
10.1186/gb-2010-11-9-r94
10.1016/j.tplants.2010.10.006
10.1159/000084979
10.1101/gr.074492.107
10.1093/jxb/erp391
10.1186/gb-2004-5-2-r12
10.1104/pp.110.163923
10.1111/j.1365-313X.2010.04323.x
10.2307/3391953
10.1038/nrg2593
10.1105/tpc.106.042291
10.1104/pp.108.122457
10.1093/gbe/evq033
10.1186/1471-2229-4-10
10.1093/mp/ssn094
10.1038/ng.475
10.1155/2008/619832
10.1038/nmeth.1527
10.1007/978-3-642-86659-3
10.1038/35048692
10.1038/nature08747
10.1007/978-1-4419-7118-0_1
ContentType Journal Article
Copyright Springer Nature America, Inc. 2011
2015 INIST-CNRS
COPYRIGHT 2011 Nature Publishing Group
Copyright Nature Publishing Group Sep 2011
2011 Nature America, Inc. All rights reserved. 2011
Copyright_xml – notice: Springer Nature America, Inc. 2011
– notice: 2015 INIST-CNRS
– notice: COPYRIGHT 2011 Nature Publishing Group
– notice: Copyright Nature Publishing Group Sep 2011
– notice: 2011 Nature America, Inc. All rights reserved. 2011
DBID AAYXX
CITATION
IQODW
CGR
CUY
CVF
ECM
EIF
NPM
IOV
ISR
3V.
7QL
7QP
7QR
7SS
7T7
7TK
7TM
7U9
7X7
7XB
88A
88E
8AO
8C1
8FD
8FE
8FH
8FI
8FJ
8FK
8G5
ABUWG
AEUYN
AFKRA
AZQEC
BBNVY
BENPR
BHPHI
C1K
CCPQU
DWQXO
FR3
FYUFA
GHDGH
GNUQQ
GUQSH
H94
HCIFZ
K9.
LK8
M0S
M1P
M2O
M7N
M7P
MBDVC
P64
PHGZM
PHGZT
PJZUB
PKEHL
PPXIY
PQEST
PQGLB
PQQKQ
PQUKI
PRINS
Q9U
RC3
7X8
5PM
DOI 10.1038/ng.889
DatabaseName CrossRef
Pascal-Francis
Medline
MEDLINE
MEDLINE (Ovid)
MEDLINE
MEDLINE
PubMed
Gale In Context: Opposing Viewpoints
Science In Context
ProQuest Central (Corporate)
Bacteriology Abstracts (Microbiology B)
Calcium & Calcified Tissue Abstracts
Chemoreception Abstracts
Entomology Abstracts (Full archive)
Industrial and Applied Microbiology Abstracts (Microbiology A)
Neurosciences Abstracts
Nucleic Acids Abstracts
Virology and AIDS Abstracts
ProQuest Central Health & Medical Collection (via ProQuest)
ProQuest Central (purchase pre-March 2016)
Biology Database (Alumni Edition)
Medical Database (Alumni Edition)
ProQuest Pharma Collection
ProQuest Public Health Database
Technology Research Database
ProQuest SciTech Collection
ProQuest Natural Science Journals
Hospital Premium Collection
Hospital Premium Collection (Alumni Edition)
ProQuest Central (Alumni) (purchase pre-March 2016)
ProQuest Research Library
ProQuest Central (Alumni)
ProQuest One Sustainability
ProQuest Central UK/Ireland
ProQuest Central Essentials
Biological Science Database
ProQuest Central
ProQuest Natural Science Collection
Environmental Sciences and Pollution Management
ProQuest One Community College
ProQuest Central
Engineering Research Database
Health Research Premium Collection (ProQuest)
Health Research Premium Collection (Alumni)
ProQuest Central Student
ProQuest Research Library
AIDS and Cancer Research Abstracts
ProQuest SciTech Premium Collection
ProQuest Health & Medical Complete (Alumni)
Biological Sciences
ProQuest Health & Medical Collection
Medical Database
Research Library
Algology Mycology and Protozoology Abstracts (Microbiology C)
Biological Science Database
Research Library (Corporate)
Biotechnology and BioEngineering Abstracts
ProQuest Central Premium
ProQuest One Academic
ProQuest Health & Medical Research Collection
ProQuest One Academic Middle East (New)
ProQuest One Health & Nursing
ProQuest One Academic Eastern Edition (DO NOT USE)
ProQuest One Applied & Life Sciences
ProQuest One Academic
ProQuest One Academic UKI Edition
ProQuest Central China
ProQuest Central Basic
Genetics Abstracts
MEDLINE - Academic
PubMed Central (Full Participant titles)
DatabaseTitle CrossRef
MEDLINE
Medline Complete
MEDLINE with Full Text
PubMed
MEDLINE (Ovid)
Research Library Prep
ProQuest Central Student
ProQuest Central Essentials
Nucleic Acids Abstracts
SciTech Premium Collection
ProQuest Central China
Environmental Sciences and Pollution Management
ProQuest One Applied & Life Sciences
ProQuest One Sustainability
Health Research Premium Collection
Natural Science Collection
Health & Medical Research Collection
Biological Science Collection
Chemoreception Abstracts
Industrial and Applied Microbiology Abstracts (Microbiology A)
ProQuest Central (New)
ProQuest Medical Library (Alumni)
Virology and AIDS Abstracts
ProQuest Biological Science Collection
ProQuest One Academic Eastern Edition
ProQuest Hospital Collection
Health Research Premium Collection (Alumni)
Biological Science Database
Neurosciences Abstracts
ProQuest Hospital Collection (Alumni)
Biotechnology and BioEngineering Abstracts
Entomology Abstracts
ProQuest Health & Medical Complete
ProQuest One Academic UKI Edition
Engineering Research Database
ProQuest One Academic
Calcium & Calcified Tissue Abstracts
ProQuest One Academic (New)
Technology Research Database
ProQuest One Academic Middle East (New)
ProQuest Health & Medical Complete (Alumni)
ProQuest Central (Alumni Edition)
ProQuest One Community College
ProQuest One Health & Nursing
Research Library (Alumni Edition)
ProQuest Natural Science Collection
ProQuest Pharma Collection
ProQuest Biology Journals (Alumni Edition)
ProQuest Central
ProQuest Health & Medical Research Collection
Genetics Abstracts
Health and Medicine Complete (Alumni Edition)
ProQuest Central Korea
Bacteriology Abstracts (Microbiology B)
Algology Mycology and Protozoology Abstracts (Microbiology C)
AIDS and Cancer Research Abstracts
ProQuest Research Library
ProQuest Public Health
ProQuest Central Basic
ProQuest SciTech Collection
ProQuest Medical Library
ProQuest Central (Alumni)
MEDLINE - Academic
DatabaseTitleList Genetics Abstracts


MEDLINE
Research Library Prep

MEDLINE - Academic
Database_xml – sequence: 1
  dbid: NPM
  name: PubMed
  url: https://proxy.k.utb.cz/login?url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed
  sourceTypes: Index Database
– sequence: 2
  dbid: EIF
  name: MEDLINE
  url: https://proxy.k.utb.cz/login?url=https://www.webofscience.com/wos/medline/basic-search
  sourceTypes: Index Database
– sequence: 3
  dbid: BENPR
  name: ProQuest Central
  url: https://www.proquest.com/central
  sourceTypes: Aggregation Database
DeliveryMethod fulltext_linktorsrc
Discipline Agriculture
Biology
EISSN 1546-1718
EndPage 918
ExternalDocumentID PMC3586812
2468662121
A267422204
21822265
24566419
10_1038_ng_889
Genre Research Support, Non-U.S. Gov't
Journal Article
GeographicLocations United States
GeographicLocations_xml – name: United States
GrantInformation_xml – fundername: NIGMS NIH HHS
  grantid: R01 GM059138
– fundername: National Institute of General Medical Sciences : NIGMS
  grantid: R01 GM059138 || GM
GroupedDBID ---
-DZ
-~X
.55
.GJ
0R~
123
29M
2FS
36B
39C
3O-
3V.
4.4
53G
5BI
5M7
5RE
5S5
70F
7X7
85S
88A
88E
8AO
8C1
8FE
8FH
8FI
8FJ
8G5
8R4
8R5
AAEEF
AAHBH
AARCD
AAYOK
AAYZH
AAZLF
ABAWZ
ABCQX
ABDBF
ABDPE
ABEFU
ABJNI
ABLJU
ABOCM
ABTAH
ABUWG
ACBWK
ACGFO
ACGFS
ACIWK
ACMJI
ACNCT
ACPRK
ACUHS
ADBBV
ADFRT
AENEX
AEUYN
AFBBN
AFFNX
AFKRA
AFRAH
AFSHS
AGAYW
AGCDD
AGHTU
AHBCP
AHMBA
AHOSX
AHSBF
AIBTJ
ALFFA
ALIPV
ALMA_UNASSIGNED_HOLDINGS
AMTXH
ARMCB
ASPBG
AVWKF
AXYYD
AZFZN
AZQEC
B0M
BBNVY
BENPR
BHPHI
BKKNO
BPHCQ
BVXVI
CCPQU
CS3
DB5
DU5
DWQXO
EAD
EAP
EBC
EBD
EBS
EE.
EJD
EMB
EMK
EMOBN
EPL
ESX
EXGXG
F5P
FEDTE
FQGFK
FSGXE
FYUFA
GNUQQ
GUQSH
GX1
HCIFZ
HMCUK
HVGLF
HZ~
IAO
IH2
IHR
INH
INR
IOV
ISR
ITC
L7B
LGEZI
LK8
LOTEE
M0L
M1P
M2O
M7P
MVM
N9A
NADUK
NNMJJ
NXXTH
ODYON
P2P
PKN
PQQKQ
PROAC
PSQYO
Q2X
RIG
RNS
RNT
RNTTT
RVV
SHXYY
SIXXV
SJN
SNYQT
SOJ
SV3
TAOOD
TBHMF
TDRGL
TN5
TSG
TUS
UKHRP
VQA
X7M
XJT
XOL
Y6R
YHZ
ZGI
ZXP
ZY4
~8M
~KM
AAYXX
ABFSG
ACMFV
ACSTC
AETEA
AFANA
ALPWD
ATHPR
CITATION
PHGZM
PHGZT
AEZWR
AFHIU
AHWEU
AIXLP
IQODW
NFIDA
PJZUB
PPXIY
PQGLB
CGR
CUY
CVF
ECM
EIF
NPM
AEIIB
PMFND
7QL
7QP
7QR
7SS
7T7
7TK
7TM
7U9
7XB
8FD
8FK
C1K
FR3
H94
K9.
M7N
MBDVC
P64
PKEHL
PQEST
PQUKI
PRINS
Q9U
RC3
7X8
5PM
ID FETCH-LOGICAL-c688t-c88ca35051a2a691a21b0cdb49c25f262d4d00a3189b248020e98b83c446ff6c3
IEDL.DBID 7X7
ISSN 1061-4036
1546-1718
IngestDate Thu Aug 21 18:19:46 EDT 2025
Fri Jul 11 15:24:51 EDT 2025
Tue Aug 05 11:07:06 EDT 2025
Fri Jul 25 09:10:35 EDT 2025
Tue Jun 17 21:48:43 EDT 2025
Tue Jun 10 20:26:08 EDT 2025
Fri Jun 27 03:53:13 EDT 2025
Fri Jun 27 04:17:54 EDT 2025
Thu Apr 03 06:56:03 EDT 2025
Mon Jul 21 09:09:54 EDT 2025
Thu Apr 24 23:12:56 EDT 2025
Tue Jul 01 01:50:09 EDT 2025
Fri Feb 21 02:37:42 EST 2025
IsDoiOpenAccess false
IsOpenAccess true
IsPeerReviewed true
IsScholarly true
Issue 9
Keywords Genome
Language English
License http://www.springer.com/tdm
CC BY 4.0
LinkModel DirectLink
MergedId FETCHMERGED-LOGICAL-c688t-c88ca35051a2a691a21b0cdb49c25f262d4d00a3189b248020e98b83c446ff6c3
Notes ObjectType-Article-2
SourceType-Scholarly Journals-1
ObjectType-Feature-1
content type line 14
ObjectType-Article-1
ObjectType-Feature-2
content type line 23
These authors contributed equally to this work.
OpenAccessLink https://www.nature.com/articles/ng.889.pdf
PMID 21822265
PQID 894124255
PQPubID 33429
PageCount 6
ParticipantIDs pubmedcentral_primary_oai_pubmedcentral_nih_gov_3586812
proquest_miscellaneous_885910810
proquest_miscellaneous_1034820833
proquest_journals_894124255
gale_infotracmisc_A267422204
gale_infotracacademiconefile_A267422204
gale_incontextgauss_ISR_A267422204
gale_incontextgauss_IOV_A267422204
pubmed_primary_21822265
pascalfrancis_primary_24566419
crossref_citationtrail_10_1038_ng_889
crossref_primary_10_1038_ng_889
springer_journals_10_1038_ng_889
ProviderPackageCode CITATION
AAYXX
PublicationCentury 2000
PublicationDate 2011-09-01
PublicationDateYYYYMMDD 2011-09-01
PublicationDate_xml – month: 09
  year: 2011
  text: 2011-09-01
  day: 01
PublicationDecade 2010
PublicationPlace New York
PublicationPlace_xml – name: New York
– name: New York, NY
– name: United States
PublicationTitle Nature genetics
PublicationTitleAbbrev Nat Genet
PublicationTitleAlternate Nat Genet
PublicationYear 2011
Publisher Nature Publishing Group US
Nature Publishing Group
Publisher_xml – name: Nature Publishing Group US
– name: Nature Publishing Group
References Sommer (CR30) 2007; 8
Beilstein (CR3) 2010; 107
Mun (CR8) 2010; 11
Zerbino, Birney (CR31) 2008; 18
Simpson (CR29) 2009; 19
Huang (CR7) 2009; 41
Gao (CR14) 2006; 57
Oh (CR5) 2010; 154
CR10
Schmutz (CR9) 2010; 463
Hanada (CR23) 2008; 148
Amtmann (CR2) 2009; 2
Alkan, Sajjadian, Eichler (CR11) 2011; 8
Jurka (CR33) 2005; 110
DeBolt (CR25) 2010; 2
Zdobnov, Apweiler (CR34) 2001; 17
CR6
Conesa, Götz (CR12) 2008; 2008
Sudmant (CR17) 2010; 330
Mandáková, Lysak (CR28) 2008; 20
Cannon (CR24) 2004; 4
Quan (CR21) 2007; 19
Hastings (CR19) 2009; 10
Langmead, Trapnell, Pop, Salzberg (CR35) 2009; 10
Inan (CR16) 2004; 135
Dassanayake (CR18) 2011; 16
CR26
CR22
Al-Shehbaz, O'Kane (CR1) 1995; 5
Kurtz (CR32) 2004; 5
Oh (CR13) 2010; 61
Lysak (CR27) 2006; 103
Orsini (CR4) 2010; 61
Lugan (CR15) 2010; 64
Craig Plett, Møller (CR20) 2010; 33
F Gao (BFng889_CR14) 2006; 57
BFng889_CR6
IA Al-Shehbaz (BFng889_CR1) 1995; 5
A Conesa (BFng889_CR12) 2008; 2008
R Lugan (BFng889_CR15) 2010; 64
DD Sommer (BFng889_CR30) 2007; 8
F Orsini (BFng889_CR4) 2010; 61
K Hanada (BFng889_CR23) 2008; 148
J-H Mun (BFng889_CR8) 2010; 11
BFng889_CR22
J Jurka (BFng889_CR33) 2005; 110
D-H Oh (BFng889_CR5) 2010; 154
SB Cannon (BFng889_CR24) 2004; 4
BFng889_CR26
DR Zerbino (BFng889_CR31) 2008; 18
A Amtmann (BFng889_CR2) 2009; 2
M Dassanayake (BFng889_CR18) 2011; 16
MA Beilstein (BFng889_CR3) 2010; 107
C Alkan (BFng889_CR11) 2011; 8
R Quan (BFng889_CR21) 2007; 19
B Langmead (BFng889_CR35) 2009; 10
EM Zdobnov (BFng889_CR34) 2001; 17
PH Sudmant (BFng889_CR17) 2010; 330
PJ Hastings (BFng889_CR19) 2009; 10
S DeBolt (BFng889_CR25) 2010; 2
T Mandáková (BFng889_CR28) 2008; 20
D Craig Plett (BFng889_CR20) 2010; 33
D-H Oh (BFng889_CR13) 2010; 61
JT Simpson (BFng889_CR29) 2009; 19
S Kurtz (BFng889_CR32) 2004; 5
S Huang (BFng889_CR7) 2009; 41
G Inan (BFng889_CR16) 2004; 135
J Schmutz (BFng889_CR9) 2010; 463
BFng889_CR10
MA Lysak (BFng889_CR27) 2006; 103
19529830 - Mol Plant. 2009 Jan;2(1):3-12
18836039 - Plant Cell. 2008 Oct;20(10):2559-70
20595237 - J Exp Bot. 2010 Aug;61(13):3787-98
20624746 - Genome Biol Evol. 2010;2:441-53
16940040 - J Exp Bot. 2006;57(12):3259-70
16549785 - Proc Natl Acad Sci U S A. 2006 Mar 28;103(13):5224-9
20148030 - Nature. 2010 Feb 11;463(7282):763-8
11130711 - Nature. 2000 Dec 14;408(6814):796-815
20833729 - Plant Physiol. 2010 Nov;154(3):1040-52
21102452 - Nat Methods. 2011 Jan;8(1):61-5
21070405 - Plant J. 2010 Oct;64(2):215-29
15171794 - BMC Plant Biol. 2004 Jun 1;4:10
17449811 - Plant Cell. 2007 Apr;19(4):1415-31
20875114 - Genome Biol. 2010;11(9):R94
20054031 - J Exp Bot. 2010 Feb;61(4):1205-13
11590104 - Bioinformatics. 2001 Sep;17(9):847-8
16093699 - Cytogenet Genome Res. 2005;110(1-4):462-7
19251739 - Genome Res. 2009 Jun;19(6):1117-23
19881527 - Nat Genet. 2009 Dec;41(12):1275-81
18483572 - Int J Plant Genomics. 2008;2008:619832
21094076 - Trends Plant Sci. 2011 Jan;16(1):1-3
18715958 - Plant Physiol. 2008 Oct;148(2):993-1003
19261174 - Genome Biol. 2009;10(3):R25
15247369 - Plant Physiol. 2004 Jul;135(3):1718-37
17324286 - BMC Bioinformatics. 2007;8:64
21030649 - Science. 2010 Oct 29;330(6004):641-6
18349386 - Genome Res. 2008 May;18(5):821-9
19968828 - Plant Cell Environ. 2010 Apr;33(4):612-26
20921408 - Proc Natl Acad Sci U S A. 2010 Oct 26;107(43):18724-8
14759262 - Genome Biol. 2004;5(2):R12
19597530 - Nat Rev Genet. 2009 Aug;10(8):551-64
20075913 - Nature. 2010 Jan 14;463(7278):178-83
References_xml – ident: CR22
– volume: 33
  start-page: 612
  year: 2010
  end-page: 626
  ident: CR20
  article-title: Na transport in glycophytic plants: what we know and would like to know
  publication-title: Plant Cell Environ.
  doi: 10.1111/j.1365-3040.2009.02086.x
– volume: 20
  start-page: 2559
  year: 2008
  end-page: 2570
  ident: CR28
  article-title: Chromosomal phylogeny and karyotype evolution in = 7 crucifer species ( )
  publication-title: Plant Cell
  doi: 10.1105/tpc.108.062166
– volume: 17
  start-page: 847
  year: 2001
  end-page: 848
  ident: CR34
  article-title: InterProScan—an integration platform for the signature-recognition methods in InterPro
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/17.9.847
– volume: 57
  start-page: 3259
  year: 2006
  end-page: 3270
  ident: CR14
  article-title: Cloning of an H -PPase gene from and its heterologous expression to improve tobacco salt tolerance
  publication-title: J. Exp. Bot.
  doi: 10.1093/jxb/erl090
– volume: 135
  start-page: 1718
  year: 2004
  end-page: 1737
  ident: CR16
  article-title: Salt cress. A halophyte and cryophyte relative model system and its applicability to molecular genetic analyses of growth and development of extremophiles
  publication-title: Plant Physiol.
  doi: 10.1104/pp.104.041723
– volume: 10
  start-page: R25
  year: 2009
  ident: CR35
  article-title: Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
  publication-title: Genome Biol.
  doi: 10.1186/gb-2009-10-3-r25
– volume: 8
  start-page: 64
  year: 2007
  ident: CR30
  article-title: Minimus: a fast, lightweight genome assembler
  publication-title: BMC Bioinformatics
  doi: 10.1186/1471-2105-8-64
– volume: 107
  start-page: 18724
  year: 2010
  end-page: 18728
  ident: CR3
  article-title: Dated molecular phylogenies indicate a Miocene origin for
  publication-title: Proc. Natl. Acad. Sci. USA
  doi: 10.1073/pnas.0909766107
– volume: 330
  start-page: 641
  year: 2010
  end-page: 646
  ident: CR17
  article-title: Diversity of human copy number variation and multicopy genes
  publication-title: Science
  doi: 10.1126/science.1197005
– volume: 103
  start-page: 5224
  year: 2006
  end-page: 5229
  ident: CR27
  article-title: Mechanisms of chromosome number reduction in and related species
  publication-title: Proc. Natl. Acad. Sci. USA
  doi: 10.1073/pnas.0510791103
– ident: CR10
– volume: 19
  start-page: 1117
  year: 2009
  end-page: 1123
  ident: CR29
  article-title: ABySS: a parallel assembler for short read sequence data
  publication-title: Genome Res.
  doi: 10.1101/gr.089532.108
– volume: 463
  start-page: 178
  year: 2010
  end-page: 183
  ident: CR9
  article-title: Genome sequence of the palaeopolyploid soybean
  publication-title: Nature
  doi: 10.1038/nature08670
– volume: 61
  start-page: 3787
  year: 2010
  end-page: 3798
  ident: CR4
  article-title: A comparative study of salt tolerance parameters in 11 wild relatives of
  publication-title: J. Exp. Bot.
  doi: 10.1093/jxb/erq188
– volume: 11
  start-page: R94
  year: 2010
  ident: CR8
  article-title: Sequence and structure of chromosome A3
  publication-title: Genome Biol.
  doi: 10.1186/gb-2010-11-9-r94
– volume: 16
  start-page: 1
  year: 2011
  end-page: 3
  ident: CR18
  article-title: Transcription strength and halophytic lifestyle
  publication-title: Trends Plant Sci.
  doi: 10.1016/j.tplants.2010.10.006
– volume: 110
  start-page: 462
  year: 2005
  end-page: 467
  ident: CR33
  article-title: Repbase Update, a database of eukaryotic repetitive elements
  publication-title: Cytogenet. Genome Res.
  doi: 10.1159/000084979
– ident: CR6
– volume: 18
  start-page: 821
  year: 2008
  end-page: 829
  ident: CR31
  article-title: Velvet: Algorithms for short read assembly using de Bruijn graphs
  publication-title: Genome Res.
  doi: 10.1101/gr.074492.107
– volume: 61
  start-page: 1205
  year: 2010
  end-page: 1213
  ident: CR13
  article-title: Intracellular consequences of SOS1 deficiency during salt stress
  publication-title: J. Exp. Bot.
  doi: 10.1093/jxb/erp391
– volume: 5
  start-page: R12
  year: 2004
  ident: CR32
  article-title: Versatile and open software for comparing large genomes
  publication-title: Genome Biol.
  doi: 10.1186/gb-2004-5-2-r12
– volume: 154
  start-page: 1040
  year: 2010
  end-page: 1052
  ident: CR5
  article-title: Genome structures and halophyte-specific gene expression of the extremophile in comparison with ( ) and
  publication-title: Plant Physiol.
  doi: 10.1104/pp.110.163923
– volume: 64
  start-page: 215
  year: 2010
  end-page: 229
  ident: CR15
  article-title: Metabolome and water homeostasis analysis of suggests that dehydration tolerance is a key response to osmotic stress in this halophyte
  publication-title: Plant J.
  doi: 10.1111/j.1365-313X.2010.04323.x
– volume: 5
  start-page: 309
  year: 1995
  end-page: 310
  ident: CR1
  article-title: Placement of in (Brassicaceae)
  publication-title: Novon.
  doi: 10.2307/3391953
– volume: 10
  start-page: 551
  year: 2009
  end-page: 564
  ident: CR19
  article-title: Mechanisms of change in gene copy number
  publication-title: Nat. Rev. Genet.
  doi: 10.1038/nrg2593
– volume: 19
  start-page: 1415
  year: 2007
  end-page: 1431
  ident: CR21
  article-title: SCABP8/CBL10, a putative calcium sensor, interacts with the protein kinase SOS2 to protect shoots from salt stress
  publication-title: Plant Cell
  doi: 10.1105/tpc.106.042291
– volume: 148
  start-page: 993
  year: 2008
  end-page: 1003
  ident: CR23
  article-title: Importance of lineage-specific expansion of plant tandem duplicates in the adaptive response to environmental stimuli
  publication-title: Plant Physiol.
  doi: 10.1104/pp.108.122457
– volume: 2
  start-page: 441
  year: 2010
  end-page: 453
  ident: CR25
  article-title: Copy number variation shapes genome diversity in over immediate family generational scales
  publication-title: Genome Biol. Evol.
  doi: 10.1093/gbe/evq033
– volume: 4
  start-page: 10
  year: 2004
  ident: CR24
  article-title: The roles of segmental and tandem gene duplication in the evolution of large gene families in
  publication-title: BMC Plant Biol.
  doi: 10.1186/1471-2229-4-10
– volume: 2
  start-page: 3
  year: 2009
  end-page: 12
  ident: CR2
  article-title: Learning from evolution: generates new knowledge on essential and critical components of abiotic stress tolerance in plants
  publication-title: Mol. Plant
  doi: 10.1093/mp/ssn094
– volume: 41
  start-page: 1275
  year: 2009
  end-page: 1281
  ident: CR7
  article-title: The genome of the cucumber, L
  publication-title: Nat. Genet.
  doi: 10.1038/ng.475
– volume: 2008
  start-page: 619832
  year: 2008
  ident: CR12
  article-title: Blast2GO: A comprehensive suite for functional analysis in plant genomics
  publication-title: Intl. J. Plant Genomics
  doi: 10.1155/2008/619832
– ident: CR26
– volume: 8
  start-page: 61
  year: 2011
  end-page: 65
  ident: CR11
  article-title: Limitations of next-generation genome sequence assembly
  publication-title: Nat. Methods
  doi: 10.1038/nmeth.1527
– volume: 64
  start-page: 215
  year: 2010
  ident: BFng889_CR15
  publication-title: Plant J.
  doi: 10.1111/j.1365-313X.2010.04323.x
– ident: BFng889_CR22
  doi: 10.1007/978-3-642-86659-3
– volume: 33
  start-page: 612
  year: 2010
  ident: BFng889_CR20
  publication-title: Plant Cell Environ.
  doi: 10.1111/j.1365-3040.2009.02086.x
– volume: 103
  start-page: 5224
  year: 2006
  ident: BFng889_CR27
  publication-title: Proc. Natl. Acad. Sci. USA
  doi: 10.1073/pnas.0510791103
– volume: 2008
  start-page: 619832
  year: 2008
  ident: BFng889_CR12
  publication-title: Intl. J. Plant Genomics
  doi: 10.1155/2008/619832
– volume: 18
  start-page: 821
  year: 2008
  ident: BFng889_CR31
  publication-title: Genome Res.
  doi: 10.1101/gr.074492.107
– volume: 11
  start-page: R94
  year: 2010
  ident: BFng889_CR8
  publication-title: Genome Biol.
  doi: 10.1186/gb-2010-11-9-r94
– volume: 154
  start-page: 1040
  year: 2010
  ident: BFng889_CR5
  publication-title: Plant Physiol.
  doi: 10.1104/pp.110.163923
– volume: 10
  start-page: 551
  year: 2009
  ident: BFng889_CR19
  publication-title: Nat. Rev. Genet.
  doi: 10.1038/nrg2593
– volume: 5
  start-page: 309
  year: 1995
  ident: BFng889_CR1
  publication-title: Novon.
  doi: 10.2307/3391953
– volume: 5
  start-page: R12
  year: 2004
  ident: BFng889_CR32
  publication-title: Genome Biol.
  doi: 10.1186/gb-2004-5-2-r12
– ident: BFng889_CR6
  doi: 10.1038/35048692
– volume: 19
  start-page: 1415
  year: 2007
  ident: BFng889_CR21
  publication-title: Plant Cell
  doi: 10.1105/tpc.106.042291
– volume: 110
  start-page: 462
  year: 2005
  ident: BFng889_CR33
  publication-title: Cytogenet. Genome Res.
  doi: 10.1159/000084979
– volume: 17
  start-page: 847
  year: 2001
  ident: BFng889_CR34
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/17.9.847
– volume: 330
  start-page: 641
  year: 2010
  ident: BFng889_CR17
  publication-title: Science
  doi: 10.1126/science.1197005
– volume: 16
  start-page: 1
  year: 2011
  ident: BFng889_CR18
  publication-title: Trends Plant Sci.
  doi: 10.1016/j.tplants.2010.10.006
– volume: 20
  start-page: 2559
  year: 2008
  ident: BFng889_CR28
  publication-title: Plant Cell
  doi: 10.1105/tpc.108.062166
– ident: BFng889_CR10
  doi: 10.1038/nature08747
– ident: BFng889_CR26
  doi: 10.1007/978-1-4419-7118-0_1
– volume: 10
  start-page: R25
  year: 2009
  ident: BFng889_CR35
  publication-title: Genome Biol.
  doi: 10.1186/gb-2009-10-3-r25
– volume: 4
  start-page: 10
  year: 2004
  ident: BFng889_CR24
  publication-title: BMC Plant Biol.
  doi: 10.1186/1471-2229-4-10
– volume: 463
  start-page: 178
  year: 2010
  ident: BFng889_CR9
  publication-title: Nature
  doi: 10.1038/nature08670
– volume: 41
  start-page: 1275
  year: 2009
  ident: BFng889_CR7
  publication-title: Nat. Genet.
  doi: 10.1038/ng.475
– volume: 61
  start-page: 3787
  year: 2010
  ident: BFng889_CR4
  publication-title: J. Exp. Bot.
  doi: 10.1093/jxb/erq188
– volume: 107
  start-page: 18724
  year: 2010
  ident: BFng889_CR3
  publication-title: Proc. Natl. Acad. Sci. USA
  doi: 10.1073/pnas.0909766107
– volume: 19
  start-page: 1117
  year: 2009
  ident: BFng889_CR29
  publication-title: Genome Res.
  doi: 10.1101/gr.089532.108
– volume: 57
  start-page: 3259
  year: 2006
  ident: BFng889_CR14
  publication-title: J. Exp. Bot.
  doi: 10.1093/jxb/erl090
– volume: 8
  start-page: 61
  year: 2011
  ident: BFng889_CR11
  publication-title: Nat. Methods
  doi: 10.1038/nmeth.1527
– volume: 2
  start-page: 3
  year: 2009
  ident: BFng889_CR2
  publication-title: Mol. Plant
  doi: 10.1093/mp/ssn094
– volume: 135
  start-page: 1718
  year: 2004
  ident: BFng889_CR16
  publication-title: Plant Physiol.
  doi: 10.1104/pp.104.041723
– volume: 8
  start-page: 64
  year: 2007
  ident: BFng889_CR30
  publication-title: BMC Bioinformatics
  doi: 10.1186/1471-2105-8-64
– volume: 148
  start-page: 993
  year: 2008
  ident: BFng889_CR23
  publication-title: Plant Physiol.
  doi: 10.1104/pp.108.122457
– volume: 2
  start-page: 441
  year: 2010
  ident: BFng889_CR25
  publication-title: Genome Biol. Evol.
  doi: 10.1093/gbe/evq033
– volume: 61
  start-page: 1205
  year: 2010
  ident: BFng889_CR13
  publication-title: J. Exp. Bot.
  doi: 10.1093/jxb/erp391
– reference: 16940040 - J Exp Bot. 2006;57(12):3259-70
– reference: 18836039 - Plant Cell. 2008 Oct;20(10):2559-70
– reference: 19251739 - Genome Res. 2009 Jun;19(6):1117-23
– reference: 18349386 - Genome Res. 2008 May;18(5):821-9
– reference: 21102452 - Nat Methods. 2011 Jan;8(1):61-5
– reference: 18483572 - Int J Plant Genomics. 2008;2008:619832
– reference: 21094076 - Trends Plant Sci. 2011 Jan;16(1):1-3
– reference: 18715958 - Plant Physiol. 2008 Oct;148(2):993-1003
– reference: 19968828 - Plant Cell Environ. 2010 Apr;33(4):612-26
– reference: 11590104 - Bioinformatics. 2001 Sep;17(9):847-8
– reference: 20075913 - Nature. 2010 Jan 14;463(7278):178-83
– reference: 15247369 - Plant Physiol. 2004 Jul;135(3):1718-37
– reference: 17449811 - Plant Cell. 2007 Apr;19(4):1415-31
– reference: 20875114 - Genome Biol. 2010;11(9):R94
– reference: 19597530 - Nat Rev Genet. 2009 Aug;10(8):551-64
– reference: 15171794 - BMC Plant Biol. 2004 Jun 1;4:10
– reference: 20921408 - Proc Natl Acad Sci U S A. 2010 Oct 26;107(43):18724-8
– reference: 20624746 - Genome Biol Evol. 2010;2:441-53
– reference: 16549785 - Proc Natl Acad Sci U S A. 2006 Mar 28;103(13):5224-9
– reference: 19529830 - Mol Plant. 2009 Jan;2(1):3-12
– reference: 19881527 - Nat Genet. 2009 Dec;41(12):1275-81
– reference: 11130711 - Nature. 2000 Dec 14;408(6814):796-815
– reference: 20595237 - J Exp Bot. 2010 Aug;61(13):3787-98
– reference: 16093699 - Cytogenet Genome Res. 2005;110(1-4):462-7
– reference: 20833729 - Plant Physiol. 2010 Nov;154(3):1040-52
– reference: 20148030 - Nature. 2010 Feb 11;463(7282):763-8
– reference: 17324286 - BMC Bioinformatics. 2007;8:64
– reference: 21030649 - Science. 2010 Oct 29;330(6004):641-6
– reference: 21070405 - Plant J. 2010 Oct;64(2):215-29
– reference: 19261174 - Genome Biol. 2009;10(3):R25
– reference: 14759262 - Genome Biol. 2004;5(2):R12
– reference: 20054031 - J Exp Bot. 2010 Feb;61(4):1205-13
SSID ssj0014408
Score 2.5073547
Snippet Dong-Ha Oh and colleagues report the draft genome of the extremophile crucifer plant Thellungiella parvula . This species is endemic to highly saline...
Thellungiella parvula is related to Arabidopsis thaliana and is endemic to saline, resource-poor habitats, making it a model for the evolution of plant...
Thellungiella parvula (1) is related to Arabidopsis thaliana and is endemic to saline, resource-poor habitats (2), making it a model for the evolution of plant...
Thellungiella parvula 1 is related to Arabidopsis thaliana and is endemic to saline, resource-poor habitats 2 , making it a model for the evolution of plant...
SourceID pubmedcentral
proquest
gale
pubmed
pascalfrancis
crossref
springer
SourceType Open Access Repository
Aggregation Database
Index Database
Enrichment Source
Publisher
StartPage 913
SubjectTerms 631/181/2474
631/208/212/748
631/449/2661
Agriculture
Animal Genetics and Genomics
Arabidopsis thaliana
Bacteria
Base Sequence
Biological and medical sciences
Biomedical and Life Sciences
Biomedicine
Brassicaceae - genetics
Cancer Research
Chromosomes
Chromosomes, Plant - genetics
Colleges & universities
Environmental stress
Evolution
Fundamental and applied biological sciences. Psychology
Gene Function
Genetics
Genetics of eukaryotes. Biological and molecular evolution
Genome, Plant
Genomes
Genomics
Human Genetics
letter
Molecular Sequence Data
Physiological aspects
Plants
Rural development
Salinity
Stress, Physiological - genetics
Tandem Repeat Sequences
Thellungiella
Title The genome of the extremophile crucifer Thellungiella parvula
URI https://link.springer.com/article/10.1038/ng.889
https://www.ncbi.nlm.nih.gov/pubmed/21822265
https://www.proquest.com/docview/894124255
https://www.proquest.com/docview/1034820833
https://www.proquest.com/docview/885910810
https://pubmed.ncbi.nlm.nih.gov/PMC3586812
Volume 43
hasFullText 1
inHoldings 1
isFullTextHit
isPrint
link http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwfV1Lb9QwELagFRISQrwJLYtBIE5RE9vrOCdUqlYFiYJKi_YW2Y69rdQmYbOLxL9nJvGmCqVccvEofs3Ynz3jbwh5qwwvWVr6GPbKLBYuZ3GurYzTTENJ6VTi8aD45UgenorPs-ksxOa0IaxyvSZ2C3VZW7wj31E55kkGAPyh-Rlj0ih0roYMGrfJJjKXYURXNhvOW-i27F_CSTwmoZeyTy3E1U41Bw3JR3tRWJHvNbqF0fF9Wot_4c7r4ZN_-VC7rengAbkfMCXd7ZXgIbnlqkfkTp9l8vfjLpM8RS7WS0drTwHxUViRF-6ybs5gTaAWphcDXOgJBoWC8Z9jRBRt9OLX6kI_IacH-yd7h3HImhBbqdQytkpZzQHYpJppmcM3NYktjcgtm3omWSnKJNFgy7lhQgFcdLkyils4GHovLX9KNqq6cs8JTb3IHRipLzMnWGlMpgE_MpEpM5WOu4i8W49fYQOlOGa2uCg61zZXRTUvYJwj8mqQa3oSjWsSb3D4C2SkqDDkZa5XbVt8-vqj2GUyw3uqRNwk9P14JPQ-CPka2mJ1eGYAPUKmq5Hk9kgS7MqOiicjVRhajq5iKVJo89ZaN4pg-G0xqGlEXg-l-GecucrVqxa7LQB3Kc4jQm-QUUgrCGgticizXtmuqk8R00moIBup4SCAhOHjkur8rCMO51OFdHNQ7Vphrxo-no8X_-3bFrnbX61jqN022VguVu4lYLOlmXQWCF-1l07I5sf9o2_HfwBBsTqT
linkProvider ProQuest
linkToHtml http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwtV1Lb9QwELbKVggkhHgTWlqDqDhFTWyv4xwQKtBql7YLKtuqt-A4zrZSmyybXVB_FP-RmbyqUMqtl1w8il_jeXjG8xHyRsU8YX6SuqArA1fYkLmhNtL1Aw0tiVVeio7i_kgODsXn4_7xEvndvIXBtMpGJpaCOskN3pFvqhBxksEAfj_94SJoFAZXGwSNiit27cUv8NiKd8NPsL0bjO1sjz8O3BpUwDVSqblrlDKag973NdMyhK8feyaJRWhYP2WSJSLxPA2sHsZMKLCmbKhixQ34TWkqDYf_3iLLgoMn0yPLH7ZHXw_asAXCN5fhVYmOGcZFKzAjrjazCfBk2NF-tQ64N9UF7EdaAWn8y9K9mrD5V9S2VIY7D8j92oqlWxXbPSRLNntEble4lhePS-x6itVfzy3NUwo2JgUdMLPn-fQEpBA1wFCYUkPHmIYK4uYUc7DoVM9-Ls70E3J4I0v6lPSyPLPPCfVTEVoQC2kSWMGSOA40WKxMBCruS8utQzaa9YtMXcQcsTTOojKYzlWUTSJYZ4est3TTqmzHFYrXuPwR1sDIMMlmohdFEQ2_HEVbTAZ4M-aJ64i-HXSI3tZEaQ5jMbp-2AAzwtpaHcrVDiWcZNNpXuuwQjtyDE5L4cOYVxreiGpRU0TtwXDIq7YV_4w7l9l8UeC0BVh6inOH0GtoFBYyBPvQc8izitkuu_fRipTQQdBhw5YAS5R3W7LTk7JUOe8rLHAH3TYMeznw7n68-O_c1smdwXh_L9objnZXyN3qYh8T_VZJbz5b2JdgGc7jtfo8UvL9pkXAH4M_dVM
linkToPdf http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwtV1Lb9QwELZKEQgJId6EltYgKk7RJrbXcQ4IVZRVl0JB0KK9Bcext5XaZNnsgvrT-HfM5FWFUm695OJRbI9nxp894xlCXqqUZyzMnA97ZeQLGzM_1kb6YaShJbMqcHhQ_Lgvdw_F-8lwskJ-t29hMKyytYmVoc4Kg3fkAxVjnWQAwAPXREV83hm9mf3wsYAUOlrbahq1hOzZs19weitfj3dgqbcYG707eLvrNwUGfCOVWvhGKaM5YIBQMy1j-IZpYLJUxIYNHZMsE1kQaBD7OGVCAbKysUoVN3CGck4aDv-9Rq5HfBiiikWT7qyHLtP6FZ7EIxp6SOuyRlwN8ilIZ9zbB5vd4PZMl7Ayri6p8S_MezF08y__bbUtju6SOw2epdu1AN4jKza_T27UFS7PHlRV7CnmgT21tHAU0CYFns7taTE7AntEDYgWBtfQAwxIBcNzjNFYdKbnP5cn-iE5vBKGPiKreZHbJ4SGTsQWDITLIitYlqaRBuzKRKTSobTcemSr5V9imnTmWFXjJKnc6lwl-TQBPntks6Ob1Qk8LlC8QPYnmA0jR8Ga6mVZJuNP35JtJiO8IwvEZURfv_SIXjVEroCxGN08cYAZYZatHuV6jxJ02vSaN3qi0I0c3dRShDDmtVY2ksbolEmnIh553rXin3HlclssS5y2AMynOPcIvYRGYUpDQIqBRx7XwnbefYh4UkIHUU8MOwJMVt5vyY-PqqTlfKgw1R102wrs-cD76_H0v3PbJDdB8ZMP4_29NXKrvuHHiL91srqYL-0zgIiLdKNSRkq-X7X2_wG5M3gj
openUrl ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=The+genome+of+the+extremophile+crucifer+Thellungiella+parvula&rft.jtitle=Nature+genetics&rft.au=Dassanayake%2C+Maheshi&rft.au=Oh%2C+Dong-Ha&rft.au=Haas%2C+Jeffrey+S&rft.au=Hernandez%2C+Alvaro&rft.date=2011-09-01&rft.pub=Nature+Publishing+Group+US&rft.issn=1061-4036&rft.eissn=1546-1718&rft.volume=43&rft.issue=9&rft.spage=913&rft.epage=918&rft_id=info:doi/10.1038%2Fng.889&rft.externalDocID=10_1038_ng_889
thumbnail_l http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=1061-4036&client=summon
thumbnail_m http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=1061-4036&client=summon
thumbnail_s http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=1061-4036&client=summon