Using the Acropora digitifera genome to understand coral responses to environmental change
A coral reef genome Coral reefs are among the most biologically diverse ecosystems on the planet and are of great economic importance. They are under threat because the scleractinian corals at their core are susceptible to ocean acidification and rising seawater temperatures. The genome of the reef-...
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| Published in | Nature (London) Vol. 476; no. 7360; pp. 320 - 323 |
|---|---|
| Main Authors | , , , , , , , , , , , , |
| Format | Journal Article |
| Language | English |
| Published |
London
Nature Publishing Group UK
18.08.2011
Nature Publishing Group |
| Subjects | |
| Online Access | Get full text |
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| Abstract | A coral reef genome
Coral reefs are among the most biologically diverse ecosystems on the planet and are of great economic importance. They are under threat because the scleractinian corals at their core are susceptible to ocean acidification and rising seawater temperatures. The genome of the reef-building coral
Acropora digitifera
has been analysed with a view to understanding the molecular basis of symbiosis and responses to environmental change. The coral seems to have lost a key enzyme of cysteine biosynthesis, so may be dependent on its symbionts for this amino acid. It contains several genes with roles in protection from ultraviolet light that may have been acquired by horizontal transfer from prokaryotic organisms. The coral's innate immunity repertoire is more complex than that of the solitary sea anemone, suggesting that some of these genes are involved in symbiosis or coloniality.
Despite the enormous ecological and economic importance of coral reefs, the keystone organisms in their establishment, the scleractinian corals, increasingly face a range of anthropogenic challenges including ocean acidification and seawater temperature rise
1
,
2
,
3
,
4
. To understand better the molecular mechanisms underlying coral biology, here we decoded the approximately 420-megabase genome of
Acropora digitifera
using next-generation sequencing technology. This genome contains approximately 23,700 gene models. Molecular phylogenetics indicate that the coral and the sea anemone
Nematostella vectensis
diverged approximately 500 million years ago, considerably earlier than the time over which modern corals are represented in the fossil record (∼240 million years ago)
5
. Despite the long evolutionary history of the endosymbiosis, no evidence was found for horizontal transfer of genes from symbiont to host. However, unlike several other corals,
Acropora
seems to lack an enzyme essential for cysteine biosynthesis, implying dependency of this coral on its symbionts for this amino acid. Corals inhabit environments where they are frequently exposed to high levels of solar radiation, and analysis of the
Acropora
genome data indicates that the coral host can independently carry out
de novo
synthesis of mycosporine-like amino acids, which are potent ultraviolet-protective compounds. In addition, the coral innate immunity repertoire is notably more complex than that of the sea anemone, indicating that some of these genes may have roles in symbiosis or coloniality. A number of genes with putative roles in calcification were identified, and several of these are restricted to corals. The coral genome provides a platform for understanding the molecular basis of symbiosis and responses to environmental changes. |
|---|---|
| AbstractList | Despite the enormous ecological and economic importance of coral reefs, the keystone organisms in their establishment, the scleractinian corals, increasingly face a range of anthropogenic challenges including ocean acidification and seawater temperature rise. To understand better the molecular mechanisms underlying coral biology, here we decoded the approximately 420-megabase genome of Acropora digitifera using next-generation sequencing technology. This genome contains approximately 23,700 gene models. Molecular phylogenetics indicate that the coral and the sea anemone Nematostella vectensis diverged approximately 500 million years ago, considerably earlier than the time over which modern corals are represented in the fossil record (~240 million years ago). Despite the long evolutionary history of the endosymbiosis, no evidence was found for horizontal transfer of genes from symbiont to host. However, unlike several other corals, Acropora seems to lack an enzyme essential for cysteine biosynthesis, implying dependency of this coral on its symbionts for this amino acid. Corals inhabit environments where they are frequently exposed to high levels of solar radiation, and analysis of the Acropora genome data indicates that the coral host can independently carry out de novo synthesis of mycosporine-like amino acids, which are potent ultraviolet-protective compounds. In addition, the coral innate immunity repertoire is notably more complex than that of the sea anemone, indicating that some of these genes may have roles in symbiosis or coloniality. A number of genes with putative roles in calcification were identified, and several of these are restricted to corals. The coral genome provides a platform for understanding the molecular basis of symbiosis and responses to environmental changes. [PUBLICATION ABSTRACT] Despite the enormous ecological and economic importance of coral reefs, the keystone organisms in their establishment, the scleractinian corals, increasingly face a range of anthropogenic challenges including ocean acidification and seawater temperature rise. To understand better the molecular mechanisms underlying coral biology, here we decoded the approximately 420-megabase genome of Acropora digitifera using next-generation sequencing technology. This genome contains approximately 23,700 gene models. Molecular phylogenetics indicate that the coral and the sea anemone Nematostella vectensis diverged approximately 500 million years ago, considerably earlier than the time over which modern corals are represented in the fossil record (∼240 million years ago). Despite the long evolutionary history of the endosymbiosis, no evidence was found for horizontal transfer of genes from symbiont to host. However, unlike several other corals, Acropora seems to lack an enzyme essential for cysteine biosynthesis, implying dependency of this coral on its symbionts for this amino acid. Corals inhabit environments where they are frequently exposed to high levels of solar radiation, and analysis of the Acropora genome data indicates that the coral host can independently carry out de novo synthesis of mycosporine-like amino acids, which are potent ultraviolet-protective compounds. In addition, the coral innate immunity repertoire is notably more complex than that of the sea anemone, indicating that some of these genes may have roles in symbiosis or coloniality. A number of genes with putative roles in calcification were identified, and several of these are restricted to corals. The coral genome provides a platform for understanding the molecular basis of symbiosis and responses to environmental changes. Despite the enormous ecological and economic importance of coral reefs, the keystone organisms in their establishment, the scleractinian corals, increasingly face a range of anthropogenic challenges including ocean acidification and seawater temperature rise. To understand better the molecular mechanisms underlying coral biology, here we decoded the approximately 420-megabase genome of Acropora digitifera using next-generation sequencing technology. This genome contains approximately 23,700 gene models. Molecular phylogenetics indicate that the coral and the sea anemone Nematostella vectensis diverged approximately 500 million years ago, considerably earlier than the time over which modern corals are represented in the fossil record (∼240 million years ago). Despite the long evolutionary history of the endosymbiosis, no evidence was found for horizontal transfer of genes from symbiont to host. However, unlike several other corals, Acropora seems to lack an enzyme essential for cysteine biosynthesis, implying dependency of this coral on its symbionts for this amino acid. Corals inhabit environments where they are frequently exposed to high levels of solar radiation, and analysis of the Acropora genome data indicates that the coral host can independently carry out de novo synthesis of mycosporine-like amino acids, which are potent ultraviolet-protective compounds. In addition, the coral innate immunity repertoire is notably more complex than that of the sea anemone, indicating that some of these genes may have roles in symbiosis or coloniality. A number of genes with putative roles in calcification were identified, and several of these are restricted to corals. The coral genome provides a platform for understanding the molecular basis of symbiosis and responses to environmental changes.Despite the enormous ecological and economic importance of coral reefs, the keystone organisms in their establishment, the scleractinian corals, increasingly face a range of anthropogenic challenges including ocean acidification and seawater temperature rise. To understand better the molecular mechanisms underlying coral biology, here we decoded the approximately 420-megabase genome of Acropora digitifera using next-generation sequencing technology. This genome contains approximately 23,700 gene models. Molecular phylogenetics indicate that the coral and the sea anemone Nematostella vectensis diverged approximately 500 million years ago, considerably earlier than the time over which modern corals are represented in the fossil record (∼240 million years ago). Despite the long evolutionary history of the endosymbiosis, no evidence was found for horizontal transfer of genes from symbiont to host. However, unlike several other corals, Acropora seems to lack an enzyme essential for cysteine biosynthesis, implying dependency of this coral on its symbionts for this amino acid. Corals inhabit environments where they are frequently exposed to high levels of solar radiation, and analysis of the Acropora genome data indicates that the coral host can independently carry out de novo synthesis of mycosporine-like amino acids, which are potent ultraviolet-protective compounds. In addition, the coral innate immunity repertoire is notably more complex than that of the sea anemone, indicating that some of these genes may have roles in symbiosis or coloniality. A number of genes with putative roles in calcification were identified, and several of these are restricted to corals. The coral genome provides a platform for understanding the molecular basis of symbiosis and responses to environmental changes. A coral reef genome Coral reefs are among the most biologically diverse ecosystems on the planet and are of great economic importance. They are under threat because the scleractinian corals at their core are susceptible to ocean acidification and rising seawater temperatures. The genome of the reef-building coral Acropora digitifera has been analysed with a view to understanding the molecular basis of symbiosis and responses to environmental change. The coral seems to have lost a key enzyme of cysteine biosynthesis, so may be dependent on its symbionts for this amino acid. It contains several genes with roles in protection from ultraviolet light that may have been acquired by horizontal transfer from prokaryotic organisms. The coral's innate immunity repertoire is more complex than that of the solitary sea anemone, suggesting that some of these genes are involved in symbiosis or coloniality. Despite the enormous ecological and economic importance of coral reefs, the keystone organisms in their establishment, the scleractinian corals, increasingly face a range of anthropogenic challenges including ocean acidification and seawater temperature rise 1 , 2 , 3 , 4 . To understand better the molecular mechanisms underlying coral biology, here we decoded the approximately 420-megabase genome of Acropora digitifera using next-generation sequencing technology. This genome contains approximately 23,700 gene models. Molecular phylogenetics indicate that the coral and the sea anemone Nematostella vectensis diverged approximately 500 million years ago, considerably earlier than the time over which modern corals are represented in the fossil record (∼240 million years ago) 5 . Despite the long evolutionary history of the endosymbiosis, no evidence was found for horizontal transfer of genes from symbiont to host. However, unlike several other corals, Acropora seems to lack an enzyme essential for cysteine biosynthesis, implying dependency of this coral on its symbionts for this amino acid. Corals inhabit environments where they are frequently exposed to high levels of solar radiation, and analysis of the Acropora genome data indicates that the coral host can independently carry out de novo synthesis of mycosporine-like amino acids, which are potent ultraviolet-protective compounds. In addition, the coral innate immunity repertoire is notably more complex than that of the sea anemone, indicating that some of these genes may have roles in symbiosis or coloniality. A number of genes with putative roles in calcification were identified, and several of these are restricted to corals. The coral genome provides a platform for understanding the molecular basis of symbiosis and responses to environmental changes. |
| Audience | Academic |
| Author | Fujiwara, Mayuki Miller, David J. Ikuta, Tetsuro Shoguchi, Eiichi Fujie, Manabu Fujiyama, Asao Satoh, Nori Koyanagi, Ryo Hamada, Mayuko Tanaka, Makiko Hisata, Kanako Kawashima, Takeshi Shinzato, Chuya |
| Author_xml | – sequence: 1 givenname: Chuya surname: Shinzato fullname: Shinzato, Chuya organization: Marine Genomics Unit, Okinawa Institute of Science and Technology Promotion Corporation, Onna, Okinawa 904-0412, Japan – sequence: 2 givenname: Eiichi surname: Shoguchi fullname: Shoguchi, Eiichi organization: Marine Genomics Unit, Okinawa Institute of Science and Technology Promotion Corporation, Onna, Okinawa 904-0412, Japan – sequence: 3 givenname: Takeshi surname: Kawashima fullname: Kawashima, Takeshi organization: Marine Genomics Unit, Okinawa Institute of Science and Technology Promotion Corporation, Onna, Okinawa 904-0412, Japan – sequence: 4 givenname: Mayuko surname: Hamada fullname: Hamada, Mayuko organization: Marine Genomics Unit, Okinawa Institute of Science and Technology Promotion Corporation, Onna, Okinawa 904-0412, Japan – sequence: 5 givenname: Kanako surname: Hisata fullname: Hisata, Kanako organization: Marine Genomics Unit, Okinawa Institute of Science and Technology Promotion Corporation, Onna, Okinawa 904-0412, Japan – sequence: 6 givenname: Makiko surname: Tanaka fullname: Tanaka, Makiko organization: Marine Genomics Unit, Okinawa Institute of Science and Technology Promotion Corporation, Onna, Okinawa 904-0412, Japan – sequence: 7 givenname: Manabu surname: Fujie fullname: Fujie, Manabu organization: DNA Sequencing Center Section, Okinawa Institute of Science and Technology Promotion Corporation, Onna, Okinawa 904-0412, Japan – sequence: 8 givenname: Mayuki surname: Fujiwara fullname: Fujiwara, Mayuki organization: Marine Genomics Unit, Okinawa Institute of Science and Technology Promotion Corporation, Onna, Okinawa 904-0412, Japan – sequence: 9 givenname: Ryo surname: Koyanagi fullname: Koyanagi, Ryo organization: Marine Genomics Unit, Okinawa Institute of Science and Technology Promotion Corporation, Onna, Okinawa 904-0412, Japan – sequence: 10 givenname: Tetsuro surname: Ikuta fullname: Ikuta, Tetsuro organization: Marine Genomics Unit, Okinawa Institute of Science and Technology Promotion Corporation, Onna, Okinawa 904-0412, Japan – sequence: 11 givenname: Asao surname: Fujiyama fullname: Fujiyama, Asao organization: National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan – sequence: 12 givenname: David J. surname: Miller fullname: Miller, David J. organization: ARC Centre of Excellence for Coral Reef Studies and School of Pharmacy and Molecular Sciences, James Cook University – sequence: 13 givenname: Nori surname: Satoh fullname: Satoh, Nori email: norisky@oist.jp organization: Marine Genomics Unit, Okinawa Institute of Science and Technology Promotion Corporation, Onna, Okinawa 904-0412, Japan |
| BackLink | http://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=24419427$$DView record in Pascal Francis https://www.ncbi.nlm.nih.gov/pubmed/21785439$$D View this record in MEDLINE/PubMed |
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| ContentType | Journal Article |
| Copyright | The Author(s) 2011 2015 INIST-CNRS COPYRIGHT 2011 Nature Publishing Group Copyright Nature Publishing Group Aug 18, 2011 |
| Copyright_xml | – notice: The Author(s) 2011 – notice: 2015 INIST-CNRS – notice: COPYRIGHT 2011 Nature Publishing Group – notice: Copyright Nature Publishing Group Aug 18, 2011 |
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| DOI | 10.1038/nature10249 |
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| Keywords | Warming Mortality Acidification Coral reef Phylogeny Sentinel animal Dynamical climatology Marine environment Climate change Coelenterata Gene Cnidaria Ocean Water pollution Invertebrata |
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Coral reefs are among the most biologically diverse ecosystems on the planet and are of great economic importance. They are under threat... Despite the enormous ecological and economic importance of coral reefs, the keystone organisms in their establishment, the scleractinian corals, increasingly... |
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| Title | Using the Acropora digitifera genome to understand coral responses to environmental change |
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