Cell type of origin influences the molecular and functional properties of mouse induced pluripotent stem cells

Induced pluripotent stem cells (iPSCs) have been derived from various somatic cell populations through ectopic expression of defined factors. It remains unclear whether iPSCs generated from different cell types are molecularly and functionally similar. Here we show that iPSCs obtained from mouse fib...

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Published inNature biotechnology Vol. 28; no. 8; pp. 848 - 855
Main Authors Wagers, Amy J, Eminli, Sarah, Evans, Todd, Liu, Susanna, Kulalert, Warakorn, Li, Yushan, Apostolou, Effie, Tan, Kah Yong, Natesan, Sridaran, Melnick, Ari, Polo, Jose M, Shioda, Toshi, Hochedlinger, Konrad, Stadtfeld, Matthias, Figueroa, Maria Eugenia
Format Journal Article
LanguageEnglish
Published New York, NY Nature Publishing Group 01.08.2010
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Abstract Induced pluripotent stem cells (iPSCs) have been derived from various somatic cell populations through ectopic expression of defined factors. It remains unclear whether iPSCs generated from different cell types are molecularly and functionally similar. Here we show that iPSCs obtained from mouse fibroblasts, hematopoietic and myogenic cells exhibit distinct transcriptional and epigenetic patterns. Moreover, we demonstrate that cellular origin influences the in vitro differentiation potentials of iPSCs into embryoid bodies and different hematopoietic cell types. Notably, continuous passaging of iPSCs largely attenuates these differences. Our results suggest that early-passage iPSCs retain a transient epigenetic memory of their somatic cells of origin, which manifests as differential gene expression and altered differentiation capacity. These observations may influence ongoing attempts to use iPSCs for disease modeling and could also be exploited in potential therapeutic applications to enhance differentiation into desired cell lineages.
AbstractList Induced pluripotent stem cells (iPSCs) have been derived from various somatic cell populations through ectopic expression of defined factors. It remains unclear whether iPSCs generated from different cell types are molecularly and functionally similar. Here we show that iPSCs obtained from mouse fibroblasts, hematopoietic and myogenic cells exhibit distinct transcriptional and epigenetic patterns. Moreover, we demonstrate that cellular origin influences the in vitro differentiation potentials of iPSCs into embryoid bodies and different hematopoietic cell types. Notably, continuous passaging of iPSCs largely attenuates these differences. Our results suggest that early-passage iPSCs retain a transient epigenetic memory of their somatic cells of origin, which manifests as differential gene expression and altered differentiation capacity. These observations may influence ongoing attempts to use iPSCs for disease modeling and could also be exploited in potential therapeutic applications to enhance differentiation into desired cell lineages.
Polo et al. show that early-passage induced pluripotent stem cells retain an epigenetic memory of their cell type of origin. These epigenetic differences affect the cells' differentiation potential and might be exploited to generate particular cell types of interest.
Induced pluripotent stem cells (iPSCs) have been derived from various somatic cell populations through ectopic expression of defined factors. It remains unclear whether iPSCs generated from different cell types are molecularly and functionally similar. Here we show that iPSCs obtained from mouse fibroblasts, hematopoietic and myogenic cells exhibit distinct transcriptional and epigenetic patterns. Moreover, we demonstrate that cellular origin influences the in vitro differentiation potentials of iPSCs into embryoid bodies and different hematopoietic cell types. Notably, continuous passaging of iPSCs largely attenuates these differences. Our results suggest that early-passage iPSCs retain a transient epigenetic memory of their somatic cells of origin, which manifests as differential gene expression and altered differentiation capacity. These observations may influence ongoing attempts to use iPSCs for disease modeling and could also be exploited in potential therapeutic applications to enhance differentiation into desired cell lineages.
Induced pluripotent stem cells (iPSCs) have been derived from various somatic cell populations through ectopic expression of defined factors. It remains unclear whether iPSCs generated from different cell types are molecularly and functionally similar. Here we show that iPSCs obtained from mouse fibroblasts, hematopoietic and myogenic cells exhibit distinct transcriptional and epigenetic patterns. Moreover, we demonstrate that cellular origin influences the in vitro differentiation potentials of iPSCs into embryoid bodies and different hematopoietic cell types. Notably, continuous passaging of iPSCs largely attenuates these differences. Our results suggest that early-passage iPSCs retain a transient epigenetic memory of their somatic cells of origin, which manifests as differential gene expression and altered differentiation capacity. These observations may influence ongoing attempts to use iPSCs for disease modeling and could also be exploited in potential therapeutic applications to enhance differentiation into desired cell lineages. [PUBLICATION ABSTRACT]
Audience Academic
Author Figueroa, Maria Eugenia
Kulalert, Warakorn
Tan, Kah Yong
Melnick, Ari
Li, Yushan
Polo, Jose M
Wagers, Amy J
Liu, Susanna
Shioda, Toshi
Apostolou, Effie
Hochedlinger, Konrad
Eminli, Sarah
Natesan, Sridaran
Evans, Todd
Stadtfeld, Matthias
AuthorAffiliation 2 Massachusetts General Hospital Cancer Center, Charlestown, Massachusetts, USA
4 Harvard Stem Cell Institute, Cambridge, Massachusetts, USA
7 Joslin Diabetes Center, Boston, Massachusetts, USA
8 Sanofi-Aventis Cambridge Genomics Center, Cambridge, Massachusetts, USA
1 Howard Hughes Medical Institute and Department of Stem Cell and Regenerative Biology, Harvard University and Harvard Medical School, Cambridge, Massachusetts, USA
3 Massachusetts General Hospital Center for Regenerative Medicine, Boston, Massachusetts, USA
5 Department of Surgery, Weill Cornell Medical College, New York, New York, USA
6 Department of Medicine, Hematology Oncology Division, Weill Cornell Medical College, New York, New York, USA
AuthorAffiliation_xml – name: 8 Sanofi-Aventis Cambridge Genomics Center, Cambridge, Massachusetts, USA
– name: 7 Joslin Diabetes Center, Boston, Massachusetts, USA
– name: 4 Harvard Stem Cell Institute, Cambridge, Massachusetts, USA
– name: 6 Department of Medicine, Hematology Oncology Division, Weill Cornell Medical College, New York, New York, USA
– name: 2 Massachusetts General Hospital Cancer Center, Charlestown, Massachusetts, USA
– name: 3 Massachusetts General Hospital Center for Regenerative Medicine, Boston, Massachusetts, USA
– name: 1 Howard Hughes Medical Institute and Department of Stem Cell and Regenerative Biology, Harvard University and Harvard Medical School, Cambridge, Massachusetts, USA
– name: 5 Department of Surgery, Weill Cornell Medical College, New York, New York, USA
Author_xml – givenname: Amy J
  surname: Wagers
  fullname: Wagers, Amy J
  organization: Howard Hughes Medical Institute and Department of Stem Cell and Regenerative Biology, Harvard University and Harvard Medical School Harvard Stem Cell Institute Joslin Diabetes Center
– givenname: Sarah
  surname: Eminli
  fullname: Eminli, Sarah
  organization: Howard Hughes Medical Institute and Department of Stem Cell and Regenerative Biology, Harvard University and Harvard Medical School Massachusetts General Hospital Cancer Center Massachusetts General Hospital Center for Regenerative Medicine Harvard Stem Cell Institute
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  organization: Department of Surgery, Weill Cornell Medical College
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  surname: Kulalert
  fullname: Kulalert, Warakorn
  organization: Howard Hughes Medical Institute and Department of Stem Cell and Regenerative Biology, Harvard University and Harvard Medical School Massachusetts General Hospital Cancer Center Massachusetts General Hospital Center for Regenerative Medicine Harvard Stem Cell Institute
– givenname: Yushan
  surname: Li
  fullname: Li, Yushan
  organization: Department of Medicine, Hematology Oncology Division, Weill Cornell Medical College
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  fullname: Apostolou, Effie
  organization: Howard Hughes Medical Institute and Department of Stem Cell and Regenerative Biology, Harvard University and Harvard Medical School Massachusetts General Hospital Cancer Center Massachusetts General Hospital Center for Regenerative Medicine Harvard Stem Cell Institute
– givenname: Kah Yong
  surname: Tan
  fullname: Tan, Kah Yong
  organization: Howard Hughes Medical Institute and Department of Stem Cell and Regenerative Biology, Harvard University and Harvard Medical School Harvard Stem Cell Institute Joslin Diabetes Center
– givenname: Sridaran
  surname: Natesan
  fullname: Natesan, Sridaran
  organization: Sanofi-Aventis Cambridge Genomics Center
– givenname: Ari
  surname: Melnick
  fullname: Melnick, Ari
  organization: Department of Medicine, Hematology Oncology Division, Weill Cornell Medical College
– givenname: Jose M
  surname: Polo
  fullname: Polo, Jose M
  organization: Howard Hughes Medical Institute and Department of Stem Cell and Regenerative Biology, Harvard University and Harvard Medical School Massachusetts General Hospital Cancer Center Massachusetts General Hospital Center for Regenerative Medicine Harvard Stem Cell Institute
– givenname: Toshi
  surname: Shioda
  fullname: Shioda, Toshi
  organization: Massachusetts General Hospital Cancer Center
– givenname: Konrad
  surname: Hochedlinger
  fullname: Hochedlinger, Konrad
  organization: Howard Hughes Medical Institute and Department of Stem Cell and Regenerative Biology, Harvard University and Harvard Medical School Massachusetts General Hospital Cancer Center Massachusetts General Hospital Center for Regenerative Medicine Harvard Stem Cell Institute
– givenname: Matthias
  surname: Stadtfeld
  fullname: Stadtfeld, Matthias
  organization: Howard Hughes Medical Institute and Department of Stem Cell and Regenerative Biology, Harvard University and Harvard Medical School Massachusetts General Hospital Cancer Center Massachusetts General Hospital Center for Regenerative Medicine Harvard Stem Cell Institute
– givenname: Maria Eugenia
  surname: Figueroa
  fullname: Figueroa, Maria Eugenia
  organization: Department of Medicine, Hematology Oncology Division, Weill Cornell Medical College
BackLink http://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=23147048$$DView record in Pascal Francis
https://www.ncbi.nlm.nih.gov/pubmed/20644536$$D View this record in MEDLINE/PubMed
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Keywords Origin
Transcription
Rodentia
Induced pluripotent stem cell
Somatic cell
Cell differentiation
Gene expression
In vitro
Vertebrata
Mammalia
Mouse
Epigenetics
Methylation
Language English
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Snippet Induced pluripotent stem cells (iPSCs) have been derived from various somatic cell populations through ectopic expression of defined factors. It remains...
Polo et al. show that early-passage induced pluripotent stem cells retain an epigenetic memory of their cell type of origin. These epigenetic differences...
SourceID pubmedcentral
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StartPage 848
SubjectTerms Analysis
Animals
B cells
B-Lymphocytes - cytology
Biological and medical sciences
Biotechnology
Cell Differentiation
Cell Lineage
Cells, Cultured
Diseases
Embryoid Bodies - cytology
Embryoid Bodies - metabolism
Epigenetic inheritance
Epigenomics
Fibroblasts - cytology
Fibroblasts - metabolism
Fundamental and applied biological sciences. Psychology
Gene expression
Gene Expression Profiling
Genes
Health. Pharmaceutical industry
Hematopoietic Stem Cells - cytology
Hematopoietic Stem Cells - metabolism
Induced Pluripotent Stem Cells - cytology
Induced Pluripotent Stem Cells - metabolism
Industrial applications and implications. Economical aspects
Mice
Miscellaneous
Molecular biology
Muscle, Skeletal - cytology
Polo
Rodents
Stem cells
Stem Cells - cytology
Transcription, Genetic
Title Cell type of origin influences the molecular and functional properties of mouse induced pluripotent stem cells
URI http://dx.doi.org/10.1038/nbt.1667
https://www.ncbi.nlm.nih.gov/pubmed/20644536
https://www.proquest.com/docview/741430387/abstract/
https://search.proquest.com/docview/748929309
https://search.proquest.com/docview/874183829
https://pubmed.ncbi.nlm.nih.gov/PMC3148605
Volume 28
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