Land use and climatic factors structure regional patterns in soil microbial communities
Although patterns are emerging for macroorganisms, we have limited understanding of the factors determining soil microbial community composition and productivity at large spatial extents. The overall objective of this study was to discern the drivers of microbial community composition at the extent...
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| Published in | Global ecology and biogeography Vol. 19; no. 1; pp. 27 - 39 |
|---|---|
| Main Authors | , , , |
| Format | Journal Article |
| Language | English |
| Published |
Oxford, UK
Oxford, UK : Blackwell Publishing Ltd
2010
Blackwell Publishing Ltd Blackwell Publishing Wiley Subscription Services, Inc |
| Subjects | |
| Online Access | Get full text |
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| Abstract | Although patterns are emerging for macroorganisms, we have limited understanding of the factors determining soil microbial community composition and productivity at large spatial extents. The overall objective of this study was to discern the drivers of microbial community composition at the extent of biogeographical provinces and regions. We hypothesized that factors associated with land use and climate would drive soil microbial community composition and biomass. Great Basin Province, Desert Province and California Floristic Province, California, USA. Using phospholipid fatty acid analysis, we compared microbial communities across eight land-use types sampled throughout the State of California, USA (n= 1117). The main factor driving composition and microbial biomass was land-use type, especially as related to water availability and disturbance. Dry soils were more enriched in Gram-negative bacteria and fungi, and wetter soils were more enriched in Gram-positive, anaerobic and sulphate-reducing bacteria. Microbial biomass was lowest in ecosystems with the wettest and driest soils. Disturbed soils had less fungal and more Gram-positive bacterial biomass than wildland soils. However, some factors known to influence microbial communities, such as soil pH and specific plant taxa, were not important here. Distinct microbial communities were associated with land-use types and disturbance at the regional extent. Overall, soil water availability was an important determinant of soil microbial community composition. However, because of the inclusion of managed and irrigated agricultural ecosystems, the effect of precipitation was not significant. Effects of environmental and management factors, such as flooding, tillage and irrigation, suggest that agricultural management can have larger effects on soil microbial communities than elevation and precipitation gradients. |
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| AbstractList | Aim
Although patterns are emerging for macroorganisms, we have limited understanding of the factors determining soil microbial community composition and productivity at large spatial extents. The overall objective of this study was to discern the drivers of microbial community composition at the extent of biogeographical provinces and regions. We hypothesized that factors associated with land use and climate would drive soil microbial community composition and biomass.
Location
Great Basin Province, Desert Province and California Floristic Province, California, USA.
Methods
Using phospholipid fatty acid analysis, we compared microbial communities across eight land‐use types sampled throughout the State of California, USA (
n
= 1117).
Results
The main factor driving composition and microbial biomass was land‐use type, especially as related to water availability and disturbance. Dry soils were more enriched in Gram‐negative bacteria and fungi, and wetter soils were more enriched in Gram‐positive, anaerobic and sulphate‐reducing bacteria. Microbial biomass was lowest in ecosystems with the wettest and driest soils. Disturbed soils had less fungal and more Gram‐positive bacterial biomass than wildland soils. However, some factors known to influence microbial communities, such as soil pH and specific plant taxa, were not important here.
Main conclusions
Distinct microbial communities were associated with land‐use types and disturbance at the regional extent. Overall, soil water availability was an important determinant of soil microbial community composition. However, because of the inclusion of managed and irrigated agricultural ecosystems, the effect of precipitation was not significant. Effects of environmental and management factors, such as flooding, tillage and irrigation, suggest that agricultural management can have larger effects on soil microbial communities than elevation and precipitation gradients. Aim Although patterns are emerging for macroorganisms, we have limited understanding of the factors determining soil microbial community composition and productivity at large spatial extents. The overall objective of this study was to discern the drivers of microbial community composition at the extent of biogeographical provinces and regions. We hypothesized that factors associated with land use and climate would drive soil microbial community composition and biomass. Location Great Basin Province, Desert Province and California Floristic Province, California, USA. Methods Using phospholipid fatty acid analysis, we compared microbial communities across eight land-use types sampled throughout the State of California, USA (n= 1117). Results The main factor driving composition and microbial biomass was land-use type, especially as related to water availability and disturbance. Dry soils were more enriched in Gram-negative bacteria and fungi, and wetter soils were more enriched in Gram-positive, anaerobic and sulphate-reducing bacteria. Microbial biomass was lowest in ecosystems with the wettest and driest soils. Disturbed soils had less fungal and more Gram-positive bacterial biomass than wildland soils. However, some factors known to influence microbial communities, such as soil pH and specific plant taxa, were not important here. Main conclusions Distinct microbial communities were associated with land-use types and disturbance at the regional extent. Overall, soil water availability was an important determinant of soil microbial community composition. However, because of the inclusion of managed and irrigated agricultural ecosystems, the effect of precipitation was not significant. Effects of environmental and management factors, such as flooding, tillage and irrigation, suggest that agricultural management can have larger effects on soil microbial communities than elevation and precipitation gradients. [PUBLICATION ABSTRACT] Although patterns are emerging for macroorganisms, we have limited understanding of the factors determining soil microbial community composition and productivity at large spatial extents. The overall objective of this study was to discern the drivers of microbial community composition at the extent of biogeographical provinces and regions. We hypothesized that factors associated with land use and climate would drive soil microbial community composition and biomass. Great Basin Province, Desert Province and California Floristic Province, California, USA. Using phospholipid fatty acid analysis, we compared microbial communities across eight land-use types sampled throughout the State of California, USA (n= 1117). The main factor driving composition and microbial biomass was land-use type, especially as related to water availability and disturbance. Dry soils were more enriched in Gram-negative bacteria and fungi, and wetter soils were more enriched in Gram-positive, anaerobic and sulphate-reducing bacteria. Microbial biomass was lowest in ecosystems with the wettest and driest soils. Disturbed soils had less fungal and more Gram-positive bacterial biomass than wildland soils. However, some factors known to influence microbial communities, such as soil pH and specific plant taxa, were not important here. Distinct microbial communities were associated with land-use types and disturbance at the regional extent. Overall, soil water availability was an important determinant of soil microbial community composition. However, because of the inclusion of managed and irrigated agricultural ecosystems, the effect of precipitation was not significant. Effects of environmental and management factors, such as flooding, tillage and irrigation, suggest that agricultural management can have larger effects on soil microbial communities than elevation and precipitation gradients. Aim Although patterns are emerging for macroorganisms, we have limited understanding of the factors determining soil microbial community composition and productivity at large spatial extents. The overall objective of this study was to discern the drivers of microbial community composition at the extent of biogeographical provinces and regions. We hypothesized that factors associated with land use and climate would drive soil microbial community composition and biomass. Location Great Basin Province, Desert Province and California Floristic Province, California, USA. Methods Using phospholipid fatty acid analysis, we compared microbial communities across eight land‐use types sampled throughout the State of California, USA (n= 1117). Results The main factor driving composition and microbial biomass was land‐use type, especially as related to water availability and disturbance. Dry soils were more enriched in Gram‐negative bacteria and fungi, and wetter soils were more enriched in Gram‐positive, anaerobic and sulphate‐reducing bacteria. Microbial biomass was lowest in ecosystems with the wettest and driest soils. Disturbed soils had less fungal and more Gram‐positive bacterial biomass than wildland soils. However, some factors known to influence microbial communities, such as soil pH and specific plant taxa, were not important here. Main conclusions Distinct microbial communities were associated with land‐use types and disturbance at the regional extent. Overall, soil water availability was an important determinant of soil microbial community composition. However, because of the inclusion of managed and irrigated agricultural ecosystems, the effect of precipitation was not significant. Effects of environmental and management factors, such as flooding, tillage and irrigation, suggest that agricultural management can have larger effects on soil microbial communities than elevation and precipitation gradients. Although patterns are emerging for macroorganisms, we have limited understanding of the factors determining soil microbial community composition and productivity at large spatial extents. The overall objective of this study was to discern the drivers of microbial community composition at the extent of biogeographical provinces and regions. We hypothesized that factors associated with land use and climate would drive soil microbial community composition and biomass. Great Basin Province, Desert Province and California Floristic Province, California, USA. Using phospholipid fatty acid analysis, we compared microbial communities across eight land-use types sampled throughout the State of California, USA ( = 1117). The main factor driving composition and microbial biomass was land-use type, especially as related to water availability and disturbance. Dry soils were more enriched in Gram-negative bacteria and fungi, and wetter soils were more enriched in Gram-positive, anaerobic and sulphate-reducing bacteria. Microbial biomass was lowest in ecosystems with the wettest and driest soils. Disturbed soils had less fungal and more Gram-positive bacterial biomass than wildland soils. However, some factors known to influence microbial communities, such as soil pH and specific plant taxa, were not important here. Distinct microbial communities were associated with land-use types and disturbance at the regional extent. Overall, soil water availability was an important determinant of soil microbial community composition. However, because of the inclusion of managed and irrigated agricultural ecosystems, the effect of precipitation was not significant. Effects of environmental and management factors, such as flooding, tillage and irrigation, suggest that agricultural management can have larger effects on soil microbial communities than elevation and precipitation gradients. Aim Although patterns are emerging for macroorganisms, we have limited understanding of the factors determining soil microbial community composition and productivity at large spatial extents. The overall objective of this study was to discern the drivers of microbial community composition at the extent of biogeographical provinces and regions. We hypothesized that factors associated with land use and climate would drive soil microbial community composition and biomass. Location Great Basin Province, Desert Province and California Floristic Province,California, USA. Methods Using phospholipid fatty acid analysis, we compared microbial communities across eight land-use types sampled throughout the State of California, USA (n = 1117). Results The main factor driving composition and microbial biomass was landuse type, especially as related to water availability and disturbance. Dry soils were more enriched in Gram-negative bacteria and fungi, and wetter soils were more enriched in Gram-positive, anaerobic and sulphate-reducing bacteria. Microbial biomass was lowest in ecosystems with the wettest and driest soils. Disturbed soils had less fungal and more Gram-positive bacterial biomass than wildland soils. However, some factors known to influence microbial ommunities, such as soil pH and specific plant taxa, were not important here. Main conclusions Distinct microbial communities were associated with landuse types and disturbance at the regional extent. Overall, soil water availability was an important determinant of soil microbial community composition. However, because of the inclusion of managed and irrigated agricultural ecosystems, the effect of precipitation was not significant. Effects of environmental and management factors, such as flooding, tillage and irrigation, suggest that agricultural management can have larger effects on soil microbial communities than elevation and precipitation gradients. Although patterns are emerging for macroorganisms, we have limited understanding of the factors determining soil microbial community composition and productivity at large spatial extents. The overall objective of this study was to discern the drivers of microbial community composition at the extent of biogeographical provinces and regions. We hypothesized that factors associated with land use and climate would drive soil microbial community composition and biomass.AIMAlthough patterns are emerging for macroorganisms, we have limited understanding of the factors determining soil microbial community composition and productivity at large spatial extents. The overall objective of this study was to discern the drivers of microbial community composition at the extent of biogeographical provinces and regions. We hypothesized that factors associated with land use and climate would drive soil microbial community composition and biomass.Great Basin Province, Desert Province and California Floristic Province, California, USA.LOCATIONGreat Basin Province, Desert Province and California Floristic Province, California, USA.Using phospholipid fatty acid analysis, we compared microbial communities across eight land-use types sampled throughout the State of California, USA (n = 1117).METHODSUsing phospholipid fatty acid analysis, we compared microbial communities across eight land-use types sampled throughout the State of California, USA (n = 1117).The main factor driving composition and microbial biomass was land-use type, especially as related to water availability and disturbance. Dry soils were more enriched in Gram-negative bacteria and fungi, and wetter soils were more enriched in Gram-positive, anaerobic and sulphate-reducing bacteria. Microbial biomass was lowest in ecosystems with the wettest and driest soils. Disturbed soils had less fungal and more Gram-positive bacterial biomass than wildland soils. However, some factors known to influence microbial communities, such as soil pH and specific plant taxa, were not important here.RESULTSThe main factor driving composition and microbial biomass was land-use type, especially as related to water availability and disturbance. Dry soils were more enriched in Gram-negative bacteria and fungi, and wetter soils were more enriched in Gram-positive, anaerobic and sulphate-reducing bacteria. Microbial biomass was lowest in ecosystems with the wettest and driest soils. Disturbed soils had less fungal and more Gram-positive bacterial biomass than wildland soils. However, some factors known to influence microbial communities, such as soil pH and specific plant taxa, were not important here.Distinct microbial communities were associated with land-use types and disturbance at the regional extent. Overall, soil water availability was an important determinant of soil microbial community composition. However, because of the inclusion of managed and irrigated agricultural ecosystems, the effect of precipitation was not significant. Effects of environmental and management factors, such as flooding, tillage and irrigation, suggest that agricultural management can have larger effects on soil microbial communities than elevation and precipitation gradients.MAIN CONCLUSIONSDistinct microbial communities were associated with land-use types and disturbance at the regional extent. Overall, soil water availability was an important determinant of soil microbial community composition. However, because of the inclusion of managed and irrigated agricultural ecosystems, the effect of precipitation was not significant. Effects of environmental and management factors, such as flooding, tillage and irrigation, suggest that agricultural management can have larger effects on soil microbial communities than elevation and precipitation gradients. ABSTRACT Aim Although patterns are emerging for macroorganisms, we have limited understanding of the factors determining soil microbial community composition and productivity at large spatial extents. The overall objective of this study was to discern the drivers of microbial community composition at the extent of biogeographical provinces and regions. We hypothesized that factors associated with land use and climate would drive soil microbial community composition and biomass. Location Great Basin Province, Desert Province and California Floristic Province, California, USA. Methods Using phospholipid fatty acid analysis, we compared microbial communities across eight land‐use types sampled throughout the State of California, USA (n= 1117). Results The main factor driving composition and microbial biomass was land‐use type, especially as related to water availability and disturbance. Dry soils were more enriched in Gram‐negative bacteria and fungi, and wetter soils were more enriched in Gram‐positive, anaerobic and sulphate‐reducing bacteria. Microbial biomass was lowest in ecosystems with the wettest and driest soils. Disturbed soils had less fungal and more Gram‐positive bacterial biomass than wildland soils. However, some factors known to influence microbial communities, such as soil pH and specific plant taxa, were not important here. Main conclusions Distinct microbial communities were associated with land‐use types and disturbance at the regional extent. Overall, soil water availability was an important determinant of soil microbial community composition. However, because of the inclusion of managed and irrigated agricultural ecosystems, the effect of precipitation was not significant. Effects of environmental and management factors, such as flooding, tillage and irrigation, suggest that agricultural management can have larger effects on soil microbial communities than elevation and precipitation gradients. |
| Author | Scow, Kate M. Drenovsky, Rebecca E. Steenwerth, Kerri L. Jackson, Louise E. |
| AuthorAffiliation | 1 Biology Department, John Carroll University, 20700 North Park Boulevard, University Heights, OH 44118 USA 2 USDA/ARS, Crops Pathology and Genetics Research Unit, Davis, CA 95616, USA 3 Department of Land, Air and Water Resources, University of California, Davis, One Shields Avenue, Davis, CA 95616 USA |
| AuthorAffiliation_xml | – name: 3 Department of Land, Air and Water Resources, University of California, Davis, One Shields Avenue, Davis, CA 95616 USA – name: 2 USDA/ARS, Crops Pathology and Genetics Research Unit, Davis, CA 95616, USA – name: 1 Biology Department, John Carroll University, 20700 North Park Boulevard, University Heights, OH 44118 USA |
| Author_xml | – sequence: 1 givenname: Rebecca E. surname: Drenovsky fullname: Drenovsky, Rebecca E. – sequence: 2 givenname: Kerri L. surname: Steenwerth fullname: Steenwerth, Kerri L. – sequence: 3 givenname: Louise E. surname: Jackson fullname: Jackson, Louise E. – sequence: 4 givenname: Kate M. surname: Scow fullname: Scow, Kate M. |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/24443643$$D View this record in MEDLINE/PubMed |
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| Snippet | Although patterns are emerging for macroorganisms, we have limited understanding of the factors determining soil microbial community composition and... Aim Although patterns are emerging for macroorganisms, we have limited understanding of the factors determining soil microbial community composition and... ABSTRACT Aim Although patterns are emerging for macroorganisms, we have limited understanding of the factors determining soil microbial community composition... Aim Although patterns are emerging for macroorganisms, we have limited understanding of the factors determining soil microbial community composition and... |
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| SubjectTerms | Acid soils Agricultural ecosystems agricultural management Agricultural soils agroecosystems altitude anaerobes atmospheric precipitation basins Biomass California climatic factors community structure Desert soils deserts disturbance disturbed soils environmental impact Fatty acids floods Forest soils Gram-negative bacteria Gram-positive bacteria Grassland soils irrigated soils irrigation land use microbial biomass microbial communities Microbiology phospholipids PLFA soil bacteria Soil ecology soil fungi soil microbial community Soil microorganisms soil pH soil water content Soils sulfate-reducing bacteria Tillage water Wetland soils xerophytes |
| Title | Land use and climatic factors structure regional patterns in soil microbial communities |
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