Fast and accurate imputation of genotypes from noisy low-coverage sequencing data in bi-parental populations - Triay, Cécile; Boizet, Alice; Fragoso, Christopher; Gkanogiannis, Anestis; Rami, Jean-François; Lorieux, Mathias (PloS one, 2025)
Keywords: Algorithms; Analysis; Availability; Biochemistry, Molecular Biology; Biology and Life Sciences; Breakpoints; Chromosomes; Computer and Information Sciences; Computer Science; Crossovers; Data Structures and Algorithms; Datasets; DNA sequencing; Engineering and Technology; Errors; Gene mapping; Gene sequencing; Genomes; Genomics; Genotype; Genotype & phenotype; Genotypes; Genotyping; Haplotypes; High-Throughput Nucleotide Sequencing - methods; Humanities and Social Sciences; Humans; Life Sciences; Mapping; Markov chains; Markov processes; Mathematical Software; Maximum likelihood estimation; Methods; Methods and statistics; Missing data; Modeling and Simulation; Next-generation sequencing; Nucleotide sequencing; Populations; Quantitative Trait Loci; Recall; Recombination; Recombination, Genetic; Research and Analysis Methods; Software; Source code; France