Parallel subgenome structure and divergent expression evolution of allo-tetraploid common carp and goldfish

• Published in: Nature genetics Vol. 53; no. 10; pp. 1493 - 1503
• Main Authors: Li, Jiong-Tang, Wang, Qi, Huang Yang, Mei-Di, Li, Qing-Song, Cui, Ming-Shu, Dong, Zai-Jie, Wang, Hong-Wei, Yu, Ju-Hua, Zhao, Yu-Jie, Yang, Chen-Ru, Wang, Ya-Xin, Sun, Xiao-Qing, Zhang, Yan, Zhao, Ran, Jia, Zhi-Ying, Wang, Xi-Yin
• Format: Journal Article
• Language: English
• Published: New York Nature Publishing Group US 01.10.2021; Nature Publishing Group
• Subjects: 38; 45; 631/208/199; 631/208/212; 631/601; Agriculture; Allopolyploid; Alternative Splicing - genetics; Animal Genetics and Genomics; Animals; Annotations; Base Sequence; Biomedical and Life Sciences; Biomedicine; Cancer Research; Carassius auratus; Carp; Carps - genetics; Chromosomes; Coexistence; Compensation; Cyprinus carpio; Diploids; Divergence; Divergent evolution; Dosage compensation; Ecotypes; Evolution; Evolution, Molecular; Gene Expression Regulation; Gene Function; Genes; Genetic aspects; Genetic research; Genetic Variation; Genome; Genomes; Goldfish; Goldfish - genetics; Homogeneity; Human Genetics; Karyotype; Likelihood Functions; Molecular Sequence Annotation; Natural history; Phylogenetics; Phylogeny; Proteins; Selection, Genetic; Species Specificity; Splicing; Structure; Survival; Synteny; Synteny - genetics; Tetraploidy; Zebrafish; China

How two subgenomes in allo-tetraploids adapt to coexistence and coordinate through structure and expression evolution requires extensive studies. In the present study, we report an improved genome assembly of allo-tetraploid common carp, an updated genome annotation of allo-tetraploid goldfish and t...