Soil microbiome analysis reveals effects of periodic waterlogging stress on sugarcane growth

Sugarcane is one of the major agricultural crops with high economic importance in Thailand. Periodic waterlogging has a long-term negative effect on sugarcane development, soil properties, and microbial diversity, impacting overall sugarcane production. Yet, the microbial structure in periodically w...

Full description

Saved in:
Bibliographic Details
Published inPloS one Vol. 18; no. 11; p. e0293834
Main Authors Leelastwattanagul, Onnicha, Sutheeworapong, Sawannee, Khoiri, Ahmad Nuruddin, Dulsawat, Sudarat, Wattanachaisaereekul, Songsak, Tachaleat, Anuwat, Duangfoo, Thanawat, Paenkaew, Prasobsook, Prommeenate, Peerada, Cheevadhanarak, Supapon, Jirakkakul, Jiraporn
Format Journal Article
LanguageEnglish
Published San Francisco Public Library of Science 02.11.2023
Public Library of Science (PLoS)
Subjects
Agricultural production
Analysis
Arthrobacter
Bacteria
Biological diversity
Biology and Life Sciences
Biomarkers
Data analysis
Earth Sciences
Ecology and Environmental Sciences
Economic importance
Evaluation
Food processing industry
Gene amplification
Genetic testing
Growth
Microbial activity
Microbiomes
Microbiota (Symbiotic organisms)
Microorganisms
Nitrogen
Plant growth
Productivity
Relative abundance
Rhizosphere
RNA
rRNA 16S
Soil analysis
Soil conditions
Soil fertility
Soil investigations
Soil microbiology
Soil microorganisms
Soil properties
Soil quality
Soil sciences
Sugarcane
Waterlogged ground
Waterlogging
Thailand
Online AccessGet full text

Cover

Abstract Sugarcane is one of the major agricultural crops with high economic importance in Thailand. Periodic waterlogging has a long-term negative effect on sugarcane development, soil properties, and microbial diversity, impacting overall sugarcane production. Yet, the microbial structure in periodically waterlogged sugarcane fields across soil compartments and growth stages in Thailand has not been documented. This study investigated soil and rhizosphere microbial communities in a periodic waterlogged field in comparison with a normal field in a sugarcane plantation in Ratchaburi, Thailand, using 16S rRNA and ITS amplicon sequencing. Alpha diversity analysis revealed comparable values in periodic waterlogged and normal fields across all growth stages, while beta diversity analysis highlighted distinct microbial community profiles in both fields throughout the growth stages. In the periodic waterlogged field, the relative abundance of Chloroflexi, Actinobacteria, and Basidiomycota increased, while Acidobacteria and Ascomycota decreased. Beneficial microbes such as Arthrobacter , Azoarcus , Bacillus , Paenibacillus , Pseudomonas , and Streptomyces thrived in the normal field, potentially serving as biomarkers for favorable soil conditions. Conversely, phytopathogens and growth-inhibiting bacteria were prevalent in the periodic waterlogged field, indicating unfavorable conditions. The co-occurrence network in rhizosphere of the normal field had the highest complexity, implying increased sharing of resources among microorganisms and enhanced soil biological fertility. Altogether, this study demonstrated that the periodic waterlogged field had a long-term negative effect on the soil microbial community which is a key determining factor of sugarcane growth.
AbstractList Sugarcane is one of the major agricultural crops with high economic importance in Thailand. Periodic waterlogging has a long-term negative effect on sugarcane development, soil properties, and microbial diversity, impacting overall sugarcane production. Yet, the microbial structure in periodically waterlogged sugarcane fields across soil compartments and growth stages in Thailand has not been documented. This study investigated soil and rhizosphere microbial communities in a periodic waterlogged field in comparison with a normal field in a sugarcane plantation in Ratchaburi, Thailand, using 16S rRNA and ITS amplicon sequencing. Alpha diversity analysis revealed comparable values in periodic waterlogged and normal fields across all growth stages, while beta diversity analysis highlighted distinct microbial community profiles in both fields throughout the growth stages. In the periodic waterlogged field, the relative abundance of Chloroflexi, Actinobacteria, and Basidiomycota increased, while Acidobacteria and Ascomycota decreased. Beneficial microbes such as Arthrobacter, Azoarcus, Bacillus, Paenibacillus, Pseudomonas, and Streptomyces thrived in the normal field, potentially serving as biomarkers for favorable soil conditions. Conversely, phytopathogens and growth-inhibiting bacteria were prevalent in the periodic waterlogged field, indicating unfavorable conditions. The co-occurrence network in rhizosphere of the normal field had the highest complexity, implying increased sharing of resources among microorganisms and enhanced soil biological fertility. Altogether, this study demonstrated that the periodic waterlogged field had a long-term negative effect on the soil microbial community which is a key determining factor of sugarcane growth.
Sugarcane is one of the major agricultural crops with high economic importance in Thailand. Periodic waterlogging has a long-term negative effect on sugarcane development, soil properties, and microbial diversity, impacting overall sugarcane production. Yet, the microbial structure in periodically waterlogged sugarcane fields across soil compartments and growth stages in Thailand has not been documented. This study investigated soil and rhizosphere microbial communities in a periodic waterlogged field in comparison with a normal field in a sugarcane plantation in Ratchaburi, Thailand, using 16S rRNA and ITS amplicon sequencing. Alpha diversity analysis revealed comparable values in periodic waterlogged and normal fields across all growth stages, while beta diversity analysis highlighted distinct microbial community profiles in both fields throughout the growth stages. In the periodic waterlogged field, the relative abundance of Chloroflexi, Actinobacteria, and Basidiomycota increased, while Acidobacteria and Ascomycota decreased. Beneficial microbes such as Arthrobacter , Azoarcus , Bacillus , Paenibacillus , Pseudomonas , and Streptomyces thrived in the normal field, potentially serving as biomarkers for favorable soil conditions. Conversely, phytopathogens and growth-inhibiting bacteria were prevalent in the periodic waterlogged field, indicating unfavorable conditions. The co-occurrence network in rhizosphere of the normal field had the highest complexity, implying increased sharing of resources among microorganisms and enhanced soil biological fertility. Altogether, this study demonstrated that the periodic waterlogged field had a long-term negative effect on the soil microbial community which is a key determining factor of sugarcane growth.
Sugarcane is one of the major agricultural crops with high economic importance in Thailand. Periodic waterlogging has a long-term negative effect on sugarcane development, soil properties, and microbial diversity, impacting overall sugarcane production. Yet, the microbial structure in periodically waterlogged sugarcane fields across soil compartments and growth stages in Thailand has not been documented. This study investigated soil and rhizosphere microbial communities in a periodic waterlogged field in comparison with a normal field in a sugarcane plantation in Ratchaburi, Thailand, using 16S rRNA and ITS amplicon sequencing. Alpha diversity analysis revealed comparable values in periodic waterlogged and normal fields across all growth stages, while beta diversity analysis highlighted distinct microbial community profiles in both fields throughout the growth stages. In the periodic waterlogged field, the relative abundance of Chloroflexi, Actinobacteria, and Basidiomycota increased, while Acidobacteria and Ascomycota decreased. Beneficial microbes such as Arthrobacter, Azoarcus, Bacillus, Paenibacillus, Pseudomonas, and Streptomyces thrived in the normal field, potentially serving as biomarkers for favorable soil conditions. Conversely, phytopathogens and growth-inhibiting bacteria were prevalent in the periodic waterlogged field, indicating unfavorable conditions. The co-occurrence network in rhizosphere of the normal field had the highest complexity, implying increased sharing of resources among microorganisms and enhanced soil biological fertility. Altogether, this study demonstrated that the periodic waterlogged field had a long-term negative effect on the soil microbial community which is a key determining factor of sugarcane growth.Sugarcane is one of the major agricultural crops with high economic importance in Thailand. Periodic waterlogging has a long-term negative effect on sugarcane development, soil properties, and microbial diversity, impacting overall sugarcane production. Yet, the microbial structure in periodically waterlogged sugarcane fields across soil compartments and growth stages in Thailand has not been documented. This study investigated soil and rhizosphere microbial communities in a periodic waterlogged field in comparison with a normal field in a sugarcane plantation in Ratchaburi, Thailand, using 16S rRNA and ITS amplicon sequencing. Alpha diversity analysis revealed comparable values in periodic waterlogged and normal fields across all growth stages, while beta diversity analysis highlighted distinct microbial community profiles in both fields throughout the growth stages. In the periodic waterlogged field, the relative abundance of Chloroflexi, Actinobacteria, and Basidiomycota increased, while Acidobacteria and Ascomycota decreased. Beneficial microbes such as Arthrobacter, Azoarcus, Bacillus, Paenibacillus, Pseudomonas, and Streptomyces thrived in the normal field, potentially serving as biomarkers for favorable soil conditions. Conversely, phytopathogens and growth-inhibiting bacteria were prevalent in the periodic waterlogged field, indicating unfavorable conditions. The co-occurrence network in rhizosphere of the normal field had the highest complexity, implying increased sharing of resources among microorganisms and enhanced soil biological fertility. Altogether, this study demonstrated that the periodic waterlogged field had a long-term negative effect on the soil microbial community which is a key determining factor of sugarcane growth.
Audience Academic
Author Sutheeworapong, Sawannee
Wattanachaisaereekul, Songsak
Leelastwattanagul, Onnicha
Duangfoo, Thanawat
Prommeenate, Peerada
Paenkaew, Prasobsook
Dulsawat, Sudarat
Jirakkakul, Jiraporn
Tachaleat, Anuwat
Cheevadhanarak, Supapon
Khoiri, Ahmad Nuruddin
AuthorAffiliation 2 Bioinformatics and Systems Biology Program, School of Bioresources and Technology and School of Information Technology, King Mongkut’s University of Technology Thonburi, Bangkok, Thailand
4 Biochemical Engineering and Systems Biology Research Group, National Center for Genetic Engineering and Biotechnology, National Science and Technology Development Agency at King Mongkut’s University of Technology Thonburi, Bangkok, Thailand
3 School of Food Industry, King Mongkut’s Institute of Technology Ladkrabang, Bangkok, Thailand
1 Pilot Plant Development and Training Institute, King Mongkut’s University of Technology Thonburi, Bangkok, Thailand
Friedrich Schiller University, GERMANY
AuthorAffiliation_xml – name: 3 School of Food Industry, King Mongkut’s Institute of Technology Ladkrabang, Bangkok, Thailand
– name: 4 Biochemical Engineering and Systems Biology Research Group, National Center for Genetic Engineering and Biotechnology, National Science and Technology Development Agency at King Mongkut’s University of Technology Thonburi, Bangkok, Thailand
– name: 2 Bioinformatics and Systems Biology Program, School of Bioresources and Technology and School of Information Technology, King Mongkut’s University of Technology Thonburi, Bangkok, Thailand
– name: Friedrich Schiller University, GERMANY
– name: 1 Pilot Plant Development and Training Institute, King Mongkut’s University of Technology Thonburi, Bangkok, Thailand
Author_xml – sequence: 1
  givenname: Onnicha
  surname: Leelastwattanagul
  fullname: Leelastwattanagul, Onnicha
– sequence: 2
  givenname: Sawannee
  surname: Sutheeworapong
  fullname: Sutheeworapong, Sawannee
– sequence: 3
  givenname: Ahmad Nuruddin
  orcidid: 0000-0003-2883-4149
  surname: Khoiri
  fullname: Khoiri, Ahmad Nuruddin
– sequence: 4
  givenname: Sudarat
  surname: Dulsawat
  fullname: Dulsawat, Sudarat
– sequence: 5
  givenname: Songsak
  surname: Wattanachaisaereekul
  fullname: Wattanachaisaereekul, Songsak
– sequence: 6
  givenname: Anuwat
  surname: Tachaleat
  fullname: Tachaleat, Anuwat
– sequence: 7
  givenname: Thanawat
  surname: Duangfoo
  fullname: Duangfoo, Thanawat
– sequence: 8
  givenname: Prasobsook
  surname: Paenkaew
  fullname: Paenkaew, Prasobsook
– sequence: 9
  givenname: Peerada
  orcidid: 0000-0003-0421-0243
  surname: Prommeenate
  fullname: Prommeenate, Peerada
– sequence: 10
  givenname: Supapon
  surname: Cheevadhanarak
  fullname: Cheevadhanarak, Supapon
– sequence: 11
  givenname: Jiraporn
  orcidid: 0000-0003-3066-4222
  surname: Jirakkakul
  fullname: Jirakkakul, Jiraporn
BookMark eNqNk9tq3DAQhk1JoUnaNyjUUCjtxW51sGW7NyWEHhYCgabtVUHI8siroLU2kpw0b9_ZrgNxCKX4Qmb0_b9Go5mj7GDwA2TZS0qWlFf0_aUfw6DccovhJWENr3nxJDukDWcLwQg_uPf_LDuK8ZKQktdCHGa_Lrx1-cbq4FvrN5ArNLqNNuYBrkG5mIMxoFPMvcm3EKzvrM5vVILgfN_boc9jChBxf8jj2Kug1QB5H_xNWj_Pnhq0gBfTepz9-Pzp--nXxdn5l9XpydlCi4qkBZCqVBp0C2XZNTUpSMsYdC1X2tSk04poZlrBy4YRhZmbghOuVUsM40VZCH6cvdr7bp2PcqpGlJyIhjaMNiUSqz3ReXUpt8FuVLiVXln5N-BDL1VIVjuQlDFTFCXXpBRFwcq6prw1Je001NAwg14fp9PGdgMYHlJQbmY63xnsWvb-WlIiMBleocPbySH4qxFikhsbNTiHpfNjlKyuBWei4gzR1w_Qx683Ub3CG9jBeDxY70zlSVVRRqtaNEgtH6Hw6wAbAHvHWIzPBO9mAmQS_E69GmOUq4tv_8-e_5yzb-6xa2yztI7ejcn6Ic7BD3sQ2zPGAEZqm9QOw8ytw4rK3QDc1UTuBkBOA4Di4oH47on-KfsD6N8NRg
CitedBy_id crossref_primary_10_3389_fpls_2024_1407789
crossref_primary_10_3390_biotech13040052
crossref_primary_10_3390_life15030488
crossref_primary_10_1016_j_apsoil_2025_106009
Cites_doi 10.1016/j.sjbs.2020.02.007
10.1016/j.apsoil.2020.103623
10.1111/jam.15016
10.3389/fmicb.2018.00612
10.1111/pce.14403
10.1002/jpln.201100300
10.3389/fmicb.2022.968053
10.1021/np800294q
10.3389/fmicb.2021.581430
10.5897/AJB11.3343
10.1007/s12275-012-2273-4
10.3390/biom10010041
10.7717/peerj.9005
10.3389/fmicb.2019.01571
10.7717/peerj.4600
10.1016/j.soilbio.2013.09.027
10.1128/MRA.01092-18
10.4067/S0718-58392019000200307
10.1097/00010694-194501000-00006
10.1038/s41587-019-0209-9
10.1111/j.1462-2920.2005.00700.x
10.1007/s10327-011-0340-z
10.5958/2394-448X.2016.00020.1
10.3390/d4040453
10.1007/s12355-014-0319-0
10.1097/00010694-193401000-00003
10.1093/bioinformatics/btm554
10.1099/ijs.0.052506-0
10.1007/s42398-018-0025-z
10.1007/s12355-011-0066-4
10.1016/j.tplants.2012.04.001
10.1038/s41396-020-0714-3
10.1093/nar/gks1219
10.1101/gr.1239303
10.1038/nature11336
10.1080/03235408.2013.837633
10.1111/1751-7915.13756
10.2136/sssaj1972.03615995003600060020x
10.1371/journal.pcbi.1002687
10.1093/aob/mcl076
10.1007/s11274-013-1568-x
10.1016/j.biombioe.2012.04.007
10.4014/jmb.1101.01012
10.1111/1462-2920.13041
10.1021/np500626x
10.1371/journal.pbio.1002352
10.1186/gb-2011-12-6-r60
10.1093/pcp/pcm144
10.3389/fpls.2019.00140
10.1080/17429145.2013.873959
10.3852/09-261
10.1016/j.cell.2018.10.020
10.1111/gcb.12816
10.1007/s13205-017-0736-3
10.5958/0974-4517.2018.00006.X
10.1093/nar/gkx295
10.1111/ele.12630
10.1016/j.steroids.2009.04.011
10.1093/biomet/75.4.800
10.1038/s41596-019-0264-1
10.18782/2320-7051.7473
10.3389/fmicb.2021.732989
10.1111/j.1399-3054.2011.01508.x
10.2134/agronmonogr9.2.2ed.c9
10.3389/fmicb.2022.825377
10.1016/j.bmc.2011.05.008
10.3390/agronomy11061099
ContentType Journal Article
Copyright COPYRIGHT 2023 Public Library of Science
2023 Leelastwattanagul et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.
Copyright: © 2023 Leelastwattanagul et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
2023 Leelastwattanagul et al 2023 Leelastwattanagul et al
2023 Leelastwattanagul et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.
Copyright_xml – notice: COPYRIGHT 2023 Public Library of Science
– notice: 2023 Leelastwattanagul et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.
– notice: Copyright: © 2023 Leelastwattanagul et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
– notice: 2023 Leelastwattanagul et al 2023 Leelastwattanagul et al
– notice: 2023 Leelastwattanagul et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.
DBID AAYXX
CITATION
IOV
ISR
3V.
7QG
7QL
7QO
7RV
7SN
7SS
7T5
7TG
7TM
7U9
7X2
7X7
7XB
88E
8AO
8C1
8FD
8FE
8FG
8FH
8FI
8FJ
8FK
ABJCF
ABUWG
AEUYN
AFKRA
ARAPS
ATCPS
AZQEC
BBNVY
BENPR
BGLVJ
BHPHI
C1K
CCPQU
D1I
DWQXO
FR3
FYUFA
GHDGH
GNUQQ
H94
HCIFZ
K9.
KB.
KB0
KL.
L6V
LK8
M0K
M0S
M1P
M7N
M7P
M7S
NAPCQ
P5Z
P62
P64
PATMY
PDBOC
PHGZM
PHGZT
PIMPY
PJZUB
PKEHL
PPXIY
PQEST
PQGLB
PQQKQ
PQUKI
PRINS
PTHSS
PYCSY
RC3
7X8
5PM
DOA
DOI 10.1371/journal.pone.0293834
DatabaseName CrossRef
Gale in Context: Opposing Viewpoints
Gale in Context: Science
ProQuest Central (Corporate)
Animal Behavior Abstracts
Bacteriology Abstracts (Microbiology B)
Biotechnology Research Abstracts
Nursing & Allied Health Database
Ecology Abstracts
Entomology Abstracts (Full archive)
Immunology Abstracts
Meteorological & Geoastrophysical Abstracts
Nucleic Acids Abstracts
Virology and AIDS Abstracts
Agricultural Science Collection
ProQuest Health & Medical Collection
ProQuest Central (purchase pre-March 2016)
Medical Database (Alumni Edition)
ProQuest Pharma Collection
Public Health Database
Technology Research Database
ProQuest SciTech Collection
ProQuest Technology Collection
ProQuest Natural Science Collection
Hospital Premium Collection
Hospital Premium Collection (Alumni Edition)
ProQuest Central (Alumni) (purchase pre-March 2016)
Materials Science & Engineering Collection
ProQuest Central (Alumni)
ProQuest One Sustainability (subscription)
ProQuest Central UK/Ireland
Advanced Technologies & Aerospace Collection
Agricultural & Environmental Science Collection
ProQuest Central Essentials
Biological Science Collection
ProQuest Central
Technology Collection
Natural Science Collection
Environmental Sciences and Pollution Management
ProQuest One
ProQuest Materials Science Collection
ProQuest Central Korea
Engineering Research Database
Health Research Premium Collection
Health Research Premium Collection (Alumni)
ProQuest Central Student
AIDS and Cancer Research Abstracts
SciTech Premium Collection
ProQuest Health & Medical Complete (Alumni)
ProQuest Materials Science Database
Nursing & Allied Health Database (Alumni Edition)
Meteorological & Geoastrophysical Abstracts - Academic
ProQuest Engineering Collection
Biological Sciences
Agricultural Science Database
Health & Medical Collection (Alumni)
Medical Database
Algology Mycology and Protozoology Abstracts (Microbiology C)
Biological Science Database
ProQuest Engineering Database
Nursing & Allied Health Premium
Advanced Technologies & Aerospace Database
ProQuest Advanced Technologies & Aerospace Collection
Biotechnology and BioEngineering Abstracts
Environmental Science Database
Materials Science Collection
ProQuest Central Premium
ProQuest One Academic
Publicly Available Content Database
ProQuest Health & Medical Research Collection
ProQuest One Academic Middle East (New)
ProQuest One Health & Nursing
ProQuest One Academic Eastern Edition (DO NOT USE)
ProQuest One Applied & Life Sciences
ProQuest One Academic
ProQuest One Academic UKI Edition
ProQuest Central China
Engineering collection
Environmental Science Collection
Genetics Abstracts
MEDLINE - Academic
PubMed Central (Full Participant titles)
DOAJ Directory of Open Access Journals
DatabaseTitle CrossRef
Agricultural Science Database
Publicly Available Content Database
ProQuest Central Student
ProQuest Advanced Technologies & Aerospace Collection
ProQuest Central Essentials
Nucleic Acids Abstracts
SciTech Premium Collection
ProQuest Central China
Environmental Sciences and Pollution Management
ProQuest One Applied & Life Sciences
ProQuest One Sustainability
Health Research Premium Collection
Meteorological & Geoastrophysical Abstracts
Natural Science Collection
Health & Medical Research Collection
Biological Science Collection
ProQuest Central (New)
ProQuest Medical Library (Alumni)
Engineering Collection
Advanced Technologies & Aerospace Collection
Engineering Database
Virology and AIDS Abstracts
ProQuest Biological Science Collection
ProQuest One Academic Eastern Edition
Agricultural Science Collection
ProQuest Hospital Collection
ProQuest Technology Collection
Health Research Premium Collection (Alumni)
Biological Science Database
Ecology Abstracts
ProQuest Hospital Collection (Alumni)
Biotechnology and BioEngineering Abstracts
Environmental Science Collection
Entomology Abstracts
Nursing & Allied Health Premium
ProQuest Health & Medical Complete
ProQuest One Academic UKI Edition
Environmental Science Database
ProQuest Nursing & Allied Health Source (Alumni)
Engineering Research Database
ProQuest One Academic
Meteorological & Geoastrophysical Abstracts - Academic
ProQuest One Academic (New)
Technology Collection
Technology Research Database
ProQuest One Academic Middle East (New)
Materials Science Collection
ProQuest Health & Medical Complete (Alumni)
ProQuest Central (Alumni Edition)
ProQuest One Community College
ProQuest One Health & Nursing
ProQuest Natural Science Collection
ProQuest Pharma Collection
ProQuest Central
ProQuest Health & Medical Research Collection
Genetics Abstracts
ProQuest Engineering Collection
Biotechnology Research Abstracts
Health and Medicine Complete (Alumni Edition)
ProQuest Central Korea
Bacteriology Abstracts (Microbiology B)
Algology Mycology and Protozoology Abstracts (Microbiology C)
Agricultural & Environmental Science Collection
AIDS and Cancer Research Abstracts
Materials Science Database
ProQuest Materials Science Collection
ProQuest Public Health
ProQuest Nursing & Allied Health Source
ProQuest SciTech Collection
Advanced Technologies & Aerospace Database
ProQuest Medical Library
Animal Behavior Abstracts
Materials Science & Engineering Collection
Immunology Abstracts
ProQuest Central (Alumni)
MEDLINE - Academic
DatabaseTitleList



MEDLINE - Academic
Agricultural Science Database
CrossRef
Database_xml – sequence: 1
  dbid: DOA
  name: DOAJ Directory of Open Access Journals
  url: https://www.doaj.org/
  sourceTypes: Open Website
– sequence: 2
  dbid: 8FG
  name: ProQuest Technology Collection
  url: https://search.proquest.com/technologycollection1
  sourceTypes: Aggregation Database
DeliveryMethod fulltext_linktorsrc
Discipline Sciences (General)
DocumentTitleAlternate Soil microbiome of waterlogged sugarcane field
EISSN 1932-6203
ExternalDocumentID 3069192195
oai_doaj_org_article_122f4453c05644258813bf51dce8e92f
PMC10621937
A771217869
10_1371_journal_pone_0293834
GeographicLocations Thailand
GeographicLocations_xml – name: Thailand
GrantInformation_xml – fundername: ;
  grantid: 181932
GroupedDBID ---
123
29O
2WC
53G
5VS
7RV
7X2
7X7
7XC
88E
8AO
8C1
8CJ
8FE
8FG
8FH
8FI
8FJ
A8Z
AAFWJ
AAUCC
AAWOE
AAYXX
ABDBF
ABIVO
ABJCF
ABUWG
ACGFO
ACIHN
ACIWK
ACPRK
ACUHS
ADBBV
AEAQA
AENEX
AEUYN
AFKRA
AFPKN
AFRAH
AHMBA
ALIPV
ALMA_UNASSIGNED_HOLDINGS
AOIJS
APEBS
ARAPS
ATCPS
BAWUL
BBNVY
BCNDV
BENPR
BGLVJ
BHPHI
BKEYQ
BPHCQ
BVXVI
BWKFM
CCPQU
CITATION
CS3
D1I
D1J
D1K
DIK
DU5
E3Z
EAP
EAS
EBD
EMOBN
ESX
EX3
F5P
FPL
FYUFA
GROUPED_DOAJ
GX1
HCIFZ
HH5
HMCUK
HYE
IAO
IEA
IGS
IHR
IHW
INH
INR
IOV
IPY
ISE
ISR
ITC
K6-
KB.
KQ8
L6V
LK5
LK8
M0K
M1P
M48
M7P
M7R
M7S
M~E
NAPCQ
O5R
O5S
OK1
OVT
P2P
P62
PATMY
PDBOC
PHGZM
PHGZT
PIMPY
PQQKQ
PROAC
PSQYO
PTHSS
PV9
PYCSY
RNS
RPM
RZL
SV3
TR2
UKHRP
WOQ
WOW
~02
~KM
BBORY
PMFND
3V.
7QG
7QL
7QO
7SN
7SS
7T5
7TG
7TM
7U9
7XB
8FD
8FK
AZQEC
C1K
DWQXO
FR3
GNUQQ
H94
K9.
KL.
M7N
P64
PJZUB
PKEHL
PPXIY
PQEST
PQGLB
PQUKI
PRINS
RC3
7X8
5PM
PUEGO
ESTFP
ID FETCH-LOGICAL-c670t-e075acecbe55d98040b22edb3acf80dca0c2fb635920a005f4303cab0f2345463
IEDL.DBID M48
ISSN 1932-6203
IngestDate Thu Nov 28 02:59:20 EST 2024
Wed Aug 27 01:31:48 EDT 2025
Thu Aug 21 18:36:27 EDT 2025
Thu Jul 10 21:59:14 EDT 2025
Fri Jul 25 10:30:03 EDT 2025
Tue Jun 17 22:20:31 EDT 2025
Tue Jun 10 21:23:57 EDT 2025
Fri Jun 27 06:10:24 EDT 2025
Fri Jun 27 05:49:42 EDT 2025
Thu May 22 21:31:22 EDT 2025
Thu Apr 24 22:52:36 EDT 2025
Tue Jul 01 03:36:00 EDT 2025
IsDoiOpenAccess true
IsOpenAccess true
IsPeerReviewed true
IsScholarly true
Issue 11
Language English
License This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Creative Commons Attribution License
LinkModel DirectLink
MergedId FETCHMERGED-LOGICAL-c670t-e075acecbe55d98040b22edb3acf80dca0c2fb635920a005f4303cab0f2345463
Notes ObjectType-Article-1
SourceType-Scholarly Journals-1
ObjectType-Feature-2
content type line 14
content type line 23
Competing Interests: The authors have declared that no competing interests exist.
ORCID 0000-0003-2883-4149
0000-0003-3066-4222
0000-0003-0421-0243
OpenAccessLink http://journals.scholarsportal.info/openUrl.xqy?doi=10.1371/journal.pone.0293834
PQID 3069192195
PQPubID 1436336
PageCount e0293834
ParticipantIDs plos_journals_3069192195
doaj_primary_oai_doaj_org_article_122f4453c05644258813bf51dce8e92f
pubmedcentral_primary_oai_pubmedcentral_nih_gov_10621937
proquest_miscellaneous_2886326732
proquest_journals_3069192195
gale_infotracmisc_A771217869
gale_infotracacademiconefile_A771217869
gale_incontextgauss_ISR_A771217869
gale_incontextgauss_IOV_A771217869
gale_healthsolutions_A771217869
crossref_citationtrail_10_1371_journal_pone_0293834
crossref_primary_10_1371_journal_pone_0293834
ProviderPackageCode CITATION
AAYXX
PublicationCentury 2000
PublicationDate 2023-11-02
PublicationDateYYYYMMDD 2023-11-02
PublicationDate_xml – month: 11
  year: 2023
  text: 2023-11-02
  day: 02
PublicationDecade 2020
PublicationPlace San Francisco
PublicationPlace_xml – name: San Francisco
– name: San Francisco, CA USA
PublicationTitle PloS one
PublicationYear 2023
Publisher Public Library of Science
Public Library of Science (PLoS)
Publisher_xml – name: Public Library of Science
– name: Public Library of Science (PLoS)
References B Breidenbach (pone.0293834.ref065) 2016; 18
M. Hyakumachi (pone.0293834.ref050) 1994; 44
R Gomathi (pone.0293834.ref021) 2015; 17
M Noll (pone.0293834.ref045) 2005; 7
CF Ajilogba (pone.0293834.ref019) 2022; 13
J Friedman (pone.0293834.ref040) 2012; 8
C Chen (pone.0293834.ref074) 2015; 78
L Jin (pone.0293834.ref086) 2013; 63
J Mayerhofer (pone.0293834.ref049) 2021; 12
D Keeney (pone.0293834.ref032) 1982
C Wang (pone.0293834.ref015) 2021; 14
J-C Qin (pone.0293834.ref072) 2009; 74
V Misra (pone.0293834.ref005) 2016; 5
P Shannon (pone.0293834.ref042) 2003; 13
RH Bray (pone.0293834.ref027) 1945; 59
N Segata (pone.0293834.ref039) 2011; 12
K Alam (pone.0293834.ref044) 2022; 13
Z Zhou (pone.0293834.ref055) 2014; 9
P Pratt (pone.0293834.ref028) 1965
T Yamada (pone.0293834.ref073) 2011; 19
NC Baron (pone.0293834.ref078) 2019; 79
J. Kjeldahl (pone.0293834.ref030) 1883; 48
F Gschwend (pone.0293834.ref048) 2020; 155
A Pontius (pone.0293834.ref070) 2008; 71
S-H Kim (pone.0293834.ref085) 2012; 12
P Manivong (pone.0293834.ref001) 2017
H Greenway (pone.0293834.ref067) 2006; 98
Z Evangelista-Martínez (pone.0293834.ref082) 2014; 30
SS Staff (pone.0293834.ref025) 1996
MM Hossain (pone.0293834.ref054) 2007; 48
M Schenck zu Schweinsberg-Mickan (pone.0293834.ref066) 2012; 175
D Bulgarelli (pone.0293834.ref024) 2012; 488
Y. Hochberg (pone.0293834.ref041) 1988; 75
E Elsherbiny (pone.0293834.ref061) 2021
A Yurkov (pone.0293834.ref064) 2012; 4
S Manik (pone.0293834.ref002) 2019; 10
R Solis-Palacios (pone.0293834.ref051) 2021; 11
G Kudoyarova (pone.0293834.ref017) 2019; 10
AL Khan (pone.0293834.ref053) 2011; 143
B Biradar (pone.0293834.ref007) 2020; 1
B Krishna (pone.0293834.ref006) 2018; 20
P Webster (pone.0293834.ref011) 1972; 14
G. Gascho (pone.0293834.ref008) 1985; 48
R Jacoby (pone.0293834.ref013) 2017; 8
V Misra (pone.0293834.ref022) 2020; 27
V Misra (pone.0293834.ref004) 2016; 5
L Chen (pone.0293834.ref036) 2018; 6
N Pandya (pone.0293834.ref062) 2018; 1
RL Berendsen (pone.0293834.ref016) 2012; 17
HM Ge (pone.0293834.ref071) 2008
C Quast (pone.0293834.ref034) 2012; 41
X Lan (pone.0293834.ref060) 2017; 2017
G. Thomas (pone.0293834.ref029) 1982; 2
RJE Alves (pone.0293834.ref087) 2019; 10
O Schlörke (pone.0293834.ref069) 2006
S Salazar-Cerezo (pone.0293834.ref084) 2018; 9
J Chong (pone.0293834.ref037) 2020; 15
J Chen (pone.0293834.ref052) 2020; 2020
E Bolyen (pone.0293834.ref033) 2019; 37
MT Agler (pone.0293834.ref079) 2016; 14
C Martínez‐Arias (pone.0293834.ref020) 2022; 45
B. Mati (pone.0293834.ref003) 2018; 5
P Sibounnavong (pone.0293834.ref075) 2011; 10
K Abarenkov (pone.0293834.ref035) 2020
P Duran (pone.0293834.ref081) 2018; 175
L Sommers (pone.0293834.ref031) 1972; 36
Q Liu (pone.0293834.ref018) 2021; 12
NC Baron (pone.0293834.ref077) 2020; 8
S-M Kang (pone.0293834.ref083) 2012; 50
B Naziya (pone.0293834.ref063) 2020; 10
A Walkley (pone.0293834.ref026) 1934; 37
S Shi (pone.0293834.ref080) 2016; 19
H Ishizawa (pone.0293834.ref068) 2018; 7
N Kallscheuer (pone.0293834.ref088) 2019
R Viator (pone.0293834.ref010) 2012; 44
A Dhariwal (pone.0293834.ref038) 2017; 45
AC Finzi (pone.0293834.ref014) 2015; 21
BM Mati (pone.0293834.ref012) 2012; 1
MA Salas-Marina (pone.0293834.ref057) 2011; 21
R Gomathi (pone.0293834.ref009) 2015; 17
R Viswanathan (pone.0293834.ref076) 2011; 13
GS Sanghera (pone.0293834.ref023) 2019; 7
LA Sauder (pone.0293834.ref089) 2020; 14
Y Assenov (pone.0293834.ref043) 2008; 24
S Islam (pone.0293834.ref056) 2014; 47
D Singh (pone.0293834.ref046) 2014; 68
M Hamayun (pone.0293834.ref058) 2010; 102
Y Yamagiwa (pone.0293834.ref059) 2011; 77
A Sathya (pone.0293834.ref047) 2017; 7
References_xml – volume: 27
  start-page: 1228
  issue: 5
  year: 2020
  ident: pone.0293834.ref022
  article-title: Morphological assessment of water stressed sugarcane: A comparison of waterlogged and drought affected crop
  publication-title: Saudi Journal of Biological Sciences
  doi: 10.1016/j.sjbs.2020.02.007
– volume: 155
  start-page: 103623
  year: 2020
  ident: pone.0293834.ref048
  article-title: Periodic waterlogging consistently shapes agricultural soil microbiomes by promoting specific taxa
  publication-title: Applied Soil Ecology
  doi: 10.1016/j.apsoil.2020.103623
– year: 2021
  ident: pone.0293834.ref061
  article-title: Action mechanisms and biocontrol of Purpureocillium lilacinum against green mould caused by Penicillium digitatum in orange fruit
  publication-title: Journal of Applied Microbiology
  doi: 10.1111/jam.15016
– volume: 9
  start-page: 612
  year: 2018
  ident: pone.0293834.ref084
  article-title: Fungal diversity and community composition of culturable fungi in Stanhopea trigrina cast gibberellin producers
  publication-title: Frontiers in Microbiology
  doi: 10.3389/fmicb.2018.00612
– volume: 45
  start-page: 2875
  issue: 10
  year: 2022
  ident: pone.0293834.ref020
  article-title: Beneficial and pathogenic plant‐microbe interactions during flooding stress.
  publication-title: Plant, Cell & Environment.
  doi: 10.1111/pce.14403
– start-page: 5978
  issue: 45
  year: 2008
  ident: pone.0293834.ref071
  article-title: Chaetoglobins A and B, two unusual alkaloids from endophytic Chaetomium globosum culture
  publication-title: Chemical Communications
– volume: 175
  start-page: 750
  issue: 5
  year: 2012
  ident: pone.0293834.ref066
  article-title: Rhizodeposition: Its contribution to microbial growth and carbon and nitrogen turnover within the rhizosphere
  publication-title: Journal of Plant Nutrition and Soil Science
  doi: 10.1002/jpln.201100300
– volume: 13
  start-page: 968053
  year: 2022
  ident: pone.0293834.ref044
  article-title: Streptomyces: The biofactory of secondary metabolites
  publication-title: Frontiers in Microbiology
  doi: 10.3389/fmicb.2022.968053
– volume: 71
  start-page: 1579
  issue: 9
  year: 2008
  ident: pone.0293834.ref070
  article-title: Antiprotozoal activities of heterocyclic-substituted xanthones from the marine-derived fungus Chaetomium sp
  publication-title: Journal of natural products
  doi: 10.1021/np800294q
– volume: 12
  start-page: 500
  year: 2021
  ident: pone.0293834.ref049
  article-title: Environmental and anthropogenic factors shape major bacterial community types across the complex mountain landscape of Switzerland
  publication-title: Frontiers in Microbiology
  doi: 10.3389/fmicb.2021.581430
– volume: 10
  start-page: 19714
  issue: 85
  year: 2011
  ident: pone.0293834.ref075
  article-title: Antifungal metabolites from antagonistic fungi used to control tomato wilt fungus Fusarium oxysporum f. sp. lycopersici
  publication-title: African Journal of Biotechnology
  doi: 10.5897/AJB11.3343
– volume: 50
  start-page: 902
  issue: 6
  year: 2012
  ident: pone.0293834.ref083
  article-title: Gibberellin-producing Promicromonospora sp. SE188 improves Solanum lycopersicum plant growth and influences endogenous plant hormones
  publication-title: Journal of microbiology
  doi: 10.1007/s12275-012-2273-4
– volume: 10
  issue: 1368
  year: 2019
  ident: pone.0293834.ref017
  article-title: Phytohormone mediation of interactions between plants and non-symbiotic growth promoting bacteria under edaphic stresses
  publication-title: Frontiers in Plant Science
– volume: 10
  start-page: 41
  issue: 1
  year: 2020
  ident: pone.0293834.ref063
  article-title: Plant growth-promoting fungi (PGPF) instigate plant growth and induce disease resistance in Capsicum annuum L. upon infection with Colletotrichum capsici (Syd.) Butler & Bisby.
  publication-title: Biomolecules
  doi: 10.3390/biom10010041
– volume: 8
  start-page: e9005
  year: 2020
  ident: pone.0293834.ref077
  article-title: Purpureocillium lilacinum and Metarhizium marquandii as plant growth-promoting fungi.
  publication-title: PeerJ
  doi: 10.7717/peerj.9005
– volume: 14
  start-page: 708
  year: 1972
  ident: pone.0293834.ref011
  article-title: Effects of flooding on sugarcane growth. 1. Stage of growth and duration of flooding
  publication-title: Proc Int Soc Sugar Cane Technol
– volume: 10
  start-page: 1571
  year: 2019
  ident: pone.0293834.ref087
  article-title: Ammonia oxidation by the arctic terrestrial thaumarchaeote Candidatus Nitrosocosmicus arcticus is stimulated by increasing temperatures
  publication-title: Frontiers in Microbiology
  doi: 10.3389/fmicb.2019.01571
– volume: 6
  start-page: e4600
  year: 2018
  ident: pone.0293834.ref036
  article-title: GMPR: A robust normalization method for zero-inflated count data with application to microbiome sequencing data.
  publication-title: PeerJ
  doi: 10.7717/peerj.4600
– volume: 44
  start-page: 53
  year: 1994
  ident: pone.0293834.ref050
  article-title: Plant-growth-promoting fungi from turfgrass rhizosphere with potential for disease suppression
  publication-title: Soil Microorganisms
– volume: 68
  start-page: 140
  year: 2014
  ident: pone.0293834.ref046
  article-title: Strong elevational trends in soil bacterial community composition on Mt. Halla, South Korea
  publication-title: Soil Biology and Biochemistry
  doi: 10.1016/j.soilbio.2013.09.027
– volume: 7
  start-page: e01092
  issue: 12
  year: 2018
  ident: pone.0293834.ref068
  article-title: Complete Genome Sequences of Two Plant Growth-Inhibiting Bacteria, Acinetobacter ursingii M3 and Asticcacaulis excentricus M6, Isolated from Duckweed (Lemna minor).
  publication-title: Microbiology Resource Announcements.
  doi: 10.1128/MRA.01092-18
– volume: 79
  start-page: 307
  issue: 2
  year: 2019
  ident: pone.0293834.ref078
  article-title: Filamentous fungi in biological control: current status and future perspectives
  publication-title: Chilean Journal of Agricultural Research
  doi: 10.4067/S0718-58392019000200307
– volume: 59
  start-page: 39
  issue: 1
  year: 1945
  ident: pone.0293834.ref027
  article-title: Determination of total, organic, and available forms of phosphorus in soils
  publication-title: Soil Science
  doi: 10.1097/00010694-194501000-00006
– volume: 5
  issue: 8
  year: 2018
  ident: pone.0293834.ref003
  article-title: What You Need to Know About Waterlogging in Agricultural Lands
  publication-title: Training Notes Paper.
– volume: 37
  start-page: 852
  issue: 8
  year: 2019
  ident: pone.0293834.ref033
  article-title: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
  publication-title: Nat Biotechnol
  doi: 10.1038/s41587-019-0209-9
– volume: 7
  start-page: 382
  issue: 3
  year: 2005
  ident: pone.0293834.ref045
  article-title: Succession of bacterial community structure and diversity in a paddy soil oxygen gradient
  publication-title: Environmental Microbiology
  doi: 10.1111/j.1462-2920.2005.00700.x
– volume: 77
  start-page: 336
  issue: 6
  year: 2011
  ident: pone.0293834.ref059
  article-title: Talaromyces wortmannii FS2 emits β-caryphyllene, which promotes plant growth and induces resistance
  publication-title: Journal of General Plant Pathology
  doi: 10.1007/s10327-011-0340-z
– volume: 48
  start-page: 11
  issue: 6
  year: 1985
  ident: pone.0293834.ref008
  article-title: Water-sugarcane relationships.
  publication-title: Sugar Journal
– volume: 1
  start-page: 54
  year: 2012
  ident: pone.0293834.ref012
  publication-title: Training Manual 9-Management of Waterlogged Agricultural Lands
– volume: 5
  start-page: 119
  issue: 2
  year: 2016
  ident: pone.0293834.ref005
  article-title: Effect of water logging on post-harvest sugarcane deterioration.
  publication-title: Agrica
  doi: 10.5958/2394-448X.2016.00020.1
– volume: 4
  start-page: 453
  issue: 4
  year: 2012
  ident: pone.0293834.ref064
  article-title: Aboveground deadwood deposition supports development of soil yeasts
  publication-title: Diversity
  doi: 10.3390/d4040453
– volume: 17
  start-page: 325
  year: 2015
  ident: pone.0293834.ref021
  article-title: Adaptive responses of sugarcane to waterlogging stress: An over view.
  publication-title: Sugar Tech
  doi: 10.1007/s12355-014-0319-0
– volume: 37
  start-page: 29
  issue: 1
  year: 1934
  ident: pone.0293834.ref026
  article-title: An examination of the Degtjareff method for determining soil organic matter, and a proposed modification of the chromic acid titration method
  publication-title: Soil science
  doi: 10.1097/00010694-193401000-00003
– volume: 24
  start-page: 282
  issue: 2
  year: 2008
  ident: pone.0293834.ref043
  article-title: Computing topological parameters of biological networks
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/btm554
– volume: 63
  start-page: 4750
  issue: Pt_12
  year: 2013
  ident: pone.0293834.ref086
  article-title: Amnibacterium soli sp. nov., an actinobacterium isolated from grass soil
  publication-title: International journal of systematic and evolutionary microbiology
  doi: 10.1099/ijs.0.052506-0
– volume: 5
  start-page: 9496
  year: 2016
  ident: pone.0293834.ref004
  article-title: Impact of drought on post-harvest quality of sugarcane crop
  publication-title: Adv Life Sci
– volume: 48
  start-page: 101
  issue: 1240
  year: 1883
  ident: pone.0293834.ref030
  article-title: New method for the determination of nitrogen
  publication-title: Chem News
– start-page: 1
  year: 2019
  ident: pone.0293834.ref088
  article-title: Description of three bacterial strains belonging to the new genus Novipirellula gen. nov., reclassificiation of Rhodopirellula rosea and Rhodopirellula caenicola and readjustment of the genus threshold of the phylogenetic marker rpoB for Planctomycetaceae
  publication-title: Antonie van Leeuwenhoek
– volume: 1
  start-page: 245
  issue: 3
  year: 2018
  ident: pone.0293834.ref062
  article-title: Plant growth promoting potential of Aspergillus sp. NPF7, isolated from wheat rhizosphere in South Gujarat, India.
  publication-title: Environmental Sustainability
  doi: 10.1007/s42398-018-0025-z
– volume: 13
  start-page: 68
  issue: 1
  year: 2011
  ident: pone.0293834.ref076
  article-title: Pathogenic and molecular confirmation of Fusarium sacchari causing wilt in sugarcane.
  publication-title: Sugar Tech.
  doi: 10.1007/s12355-011-0066-4
– volume: 12
  start-page: 1
  issue: 1
  year: 2012
  ident: pone.0293834.ref085
  article-title: Genome sequence of Desulfitobacterium hafniense DCB-2, a Gram-positive anaerobe capable of dehalogenation and metal reduction
  publication-title: BMC microbiology
– volume: 17
  start-page: 478
  issue: 8
  year: 2012
  ident: pone.0293834.ref016
  article-title: The rhizosphere microbiome and plant health
  publication-title: Trends in Plant Science
  doi: 10.1016/j.tplants.2012.04.001
– volume: 14
  start-page: 2366
  issue: 9
  year: 2020
  ident: pone.0293834.ref089
  article-title: Correction: cultivation and characterization of Candidatus Nitrosocosmicus exaquare, an ammonia-oxidizing archaeon from a municipal wastewater treatment system
  publication-title: The ISME Journal
  doi: 10.1038/s41396-020-0714-3
– volume: 41
  start-page: D590
  issue: D1
  year: 2012
  ident: pone.0293834.ref034
  article-title: The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
  publication-title: Nucleic Acids Research
  doi: 10.1093/nar/gks1219
– volume: 2017
  year: 2017
  ident: pone.0293834.ref060
  article-title: Evaluation of the biocontrol potential of Purpureocillium lilacinum QLP12 against Verticillium dahliae in eggplant.
  publication-title: BioMed Research International.
– volume: 13
  start-page: 2498
  issue: 11
  year: 2003
  ident: pone.0293834.ref042
  article-title: Cytoscape: a software environment for integrated models of biomolecular interaction networks
  publication-title: Genome Research
  doi: 10.1101/gr.1239303
– volume: 488
  start-page: 91
  issue: 7409
  year: 2012
  ident: pone.0293834.ref024
  article-title: Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota
  publication-title: Nature
  doi: 10.1038/nature11336
– volume: 47
  start-page: 1231
  issue: 10
  year: 2014
  ident: pone.0293834.ref056
  article-title: Chilli rhizosphere fungus Aspergillus spp. PPA1 promotes vegetative growth of cucumber (Cucumis sativus) plants upon root colonisation
  publication-title: Archives of Phytopathology and Plant Protection
  doi: 10.1080/03235408.2013.837633
– volume-title: Methods of Soil Analysis. Part II, Chemical and Microbiological Properties
  year: 1965
  ident: pone.0293834.ref028
– volume: 14
  start-page: 726
  issue: 2
  year: 2021
  ident: pone.0293834.ref015
  article-title: Plant growth-promoting rhizobacteria isolation from rhizosphere of submerged macrophytes and their growth-promoting effect on Vallisneria natans under high sediment organic matter load
  publication-title: Microbial Biotechnology
  doi: 10.1111/1751-7915.13756
– volume: 36
  start-page: 902
  issue: 6
  year: 1972
  ident: pone.0293834.ref031
  article-title: Determination of total phosphorus in soils: a rapid perchloric acid digestion procedure
  publication-title: Soil Science Society of America Journal
  doi: 10.2136/sssaj1972.03615995003600060020x
– volume: 8
  start-page: e1002687
  issue: 9
  year: 2012
  ident: pone.0293834.ref040
  article-title: Inferring correlation networks from genomic survey data.
  publication-title: PLoS Comput Biol
  doi: 10.1371/journal.pcbi.1002687
– volume: 98
  start-page: 9
  issue: 1
  year: 2006
  ident: pone.0293834.ref067
  article-title: Conditions Leading to High CO2 (>5 kPa) in Waterlogged–Flooded Soils and Possible Effects on Root Growth and Metabolism.
  publication-title: Annals of Botany.
  doi: 10.1093/aob/mcl076
– volume: 30
  start-page: 1639
  issue: 5
  year: 2014
  ident: pone.0293834.ref082
  article-title: Isolation and characterization of soil Streptomyces species as potential biological control agents against fungal plant pathogens
  publication-title: World Journal of Microbiology and Biotechnology
  doi: 10.1007/s11274-013-1568-x
– volume: 1
  start-page: 68
  issue: 7
  year: 2020
  ident: pone.0293834.ref007
  article-title: Surface v/s sub-surface drip irrigation in sugarcane.
  publication-title: Vigyan Varta.
– volume: 44
  start-page: 56
  year: 2012
  ident: pone.0293834.ref010
  article-title: Screening for tolerance to periodic flooding for cane grown for sucrose and bioenergy
  publication-title: Biomass and Bioenergy
  doi: 10.1016/j.biombioe.2012.04.007
– volume-title: Chemical and Microbiological Properties,(ed AL Page), 643–693, SSSA Book Series No 9.
  year: 1982
  ident: pone.0293834.ref032
– volume: 21
  start-page: 686
  issue: 7
  year: 2011
  ident: pone.0293834.ref057
  article-title: The plant growth-promoting fungus Aspergillus ustus promotes growth and induces resistance against different lifestyle pathogens in Arabidopsis thaliana
  publication-title: Journal of Microbiology and Biotechnology
  doi: 10.4014/jmb.1101.01012
– volume: 18
  start-page: 2868
  issue: 9
  year: 2016
  ident: pone.0293834.ref065
  article-title: Crop rotation of flooded rice with upland maize impacts the resident and active methanogenic microbial community
  publication-title: Environmental Microbiology
  doi: 10.1111/1462-2920.13041
– volume: 2020
  year: 2020
  ident: pone.0293834.ref052
  article-title: Bioactivities and future perspectives of chaetoglobosins.
  publication-title: Evidence-Based Complementary and Alternative Medicine.
– volume: 8
  issue: 1617
  year: 2017
  ident: pone.0293834.ref013
  article-title: The Role of Soil Microorganisms in Plant Mineral Nutrition—Current Knowledge and Future Directions.
  publication-title: Frontiers in Plant Science
– volume: 78
  start-page: 1193
  issue: 6
  year: 2015
  ident: pone.0293834.ref074
  article-title: Armochaetoglobins A–J: cytochalasan alkaloids from Chaetomium globosum TW1-1, a fungus derived from the terrestrial arthropod Armadillidium vulgare
  publication-title: Journal of Natural Products
  doi: 10.1021/np500626x
– year: 2017
  ident: pone.0293834.ref001
  publication-title: White paper: Thai sugarcane sector and sustainability
– volume: 14
  start-page: e1002352
  issue: 1
  year: 2016
  ident: pone.0293834.ref079
  article-title: Microbial hub taxa link host and abiotic factors to plant microbiome variation
  publication-title: PLoS Biology
  doi: 10.1371/journal.pbio.1002352
– year: 2020
  ident: pone.0293834.ref035
  article-title: UNITE general FASTA release for fungi.
  publication-title: version 04.02. 2020. UNITE community
– volume: 12
  start-page: 1
  issue: 6
  year: 2011
  ident: pone.0293834.ref039
  article-title: Metagenomic biomarker discovery and explanation
  publication-title: Genome biology
  doi: 10.1186/gb-2011-12-6-r60
– volume: 48
  start-page: 1724
  issue: 12
  year: 2007
  ident: pone.0293834.ref054
  article-title: The plant growth-promoting fungus Penicillium simplicissimum GP17-2 induces resistance in Arabidopsis thaliana by activation of multiple defense signals
  publication-title: Plant and cell physiology
  doi: 10.1093/pcp/pcm144
– volume: 10
  start-page: 140
  year: 2019
  ident: pone.0293834.ref002
  article-title: Soil and crop management practices to minimize the impact of waterlogging on crop productivity
  publication-title: Frontiers in Plant Science
  doi: 10.3389/fpls.2019.00140
– volume: 9
  start-page: 585
  issue: 1
  year: 2014
  ident: pone.0293834.ref055
  article-title: Diversity and plant growth-promoting ability of endophytic fungi from the five flower plant species collected from Yunnan, Southwest China.
  publication-title: Journal of Plant Interactions
  doi: 10.1080/17429145.2013.873959
– volume: 102
  start-page: 989
  issue: 5
  year: 2010
  ident: pone.0293834.ref058
  article-title: Gibberellin production and plant growth promotion from pure cultures of Cladosporium sp. MH-6 isolated from cucumber (Cucumis sativus L.).
  publication-title: Mycologia
  doi: 10.3852/09-261
– volume: 175
  start-page: 973
  issue: 4
  year: 2018
  ident: pone.0293834.ref081
  article-title: Microbial interkingdom interactions in roots promote Arabidopsis survival
  publication-title: Cell
  doi: 10.1016/j.cell.2018.10.020
– year: 1996
  ident: pone.0293834.ref025
  article-title: Soil survey laboratory methods manual.
  publication-title: Natl. Soil Surv. Center Lincoln, NE
– volume: 21
  start-page: 2082
  issue: 5
  year: 2015
  ident: pone.0293834.ref014
  article-title: Rhizosphere processes are quantitatively important components of terrestrial carbon and nutrient cycles
  publication-title: Global Change Biology
  doi: 10.1111/gcb.12816
– volume: 17
  start-page: 325
  issue: 4
  year: 2015
  ident: pone.0293834.ref009
  article-title: Adaptive responses of sugarcane to waterlogging stress: An over view.
  publication-title: Sugar Tech
  doi: 10.1007/s12355-014-0319-0
– volume: 7
  start-page: 1
  issue: 2
  year: 2017
  ident: pone.0293834.ref047
  article-title: Plant growth-promoting actinobacteria: a new strategy for enhancing sustainable production and protection of grain legumes.
  publication-title: 3 Biotech.
  doi: 10.1007/s13205-017-0736-3
– volume: 20
  start-page: 55
  issue: 1
  year: 2018
  ident: pone.0293834.ref006
  article-title: Evaluation of sugarcane (Sacccharum officinarum l.) mid-late clones under waterlogging conditions of Bihar (India).
  publication-title: Applied Biological Research
  doi: 10.5958/0974-4517.2018.00006.X
– volume: 45
  start-page: W180
  issue: W1
  year: 2017
  ident: pone.0293834.ref038
  article-title: MicrobiomeAnalyst: a web-based tool for comprehensive statistical, visual and meta-analysis of microbiome data
  publication-title: Nucleic acids research
  doi: 10.1093/nar/gkx295
– volume: 19
  start-page: 926
  issue: 8
  year: 2016
  ident: pone.0293834.ref080
  article-title: The interconnected rhizosphere: high network complexity dominates rhizosphere assemblages
  publication-title: Ecology Letters
  doi: 10.1111/ele.12630
– volume: 74
  start-page: 786
  issue: 9
  year: 2009
  ident: pone.0293834.ref072
  article-title: Polyhydroxylated steroids from an endophytic fungus, Chaetomium globosum ZY-22 isolated from Ginkgo biloba
  publication-title: Steroids
  doi: 10.1016/j.steroids.2009.04.011
– volume: 75
  start-page: 800
  issue: 4
  year: 1988
  ident: pone.0293834.ref041
  article-title: A sharper Bonferroni procedure for multiple tests of significance
  publication-title: Biometrika
  doi: 10.1093/biomet/75.4.800
– volume: 15
  start-page: 799
  issue: 3
  year: 2020
  ident: pone.0293834.ref037
  article-title: Using microbiomeAnalyst for comprehensive statistical, functional, and meta-analysis of microbiome data
  publication-title: Nature Protocols
  doi: 10.1038/s41596-019-0264-1
– volume-title: Orsellides A–E: An Example for 6‐Deoxyhexose Derivatives Produced by Fungi
  year: 2006
  ident: pone.0293834.ref069
– volume: 7
  start-page: 484
  issue: 3
  year: 2019
  ident: pone.0293834.ref023
  article-title: Perspective for genetic amelioration of sugarcane towards water logged conditions.
  publication-title: Int J Pure Appl Biosci
  doi: 10.18782/2320-7051.7473
– volume: 12
  start-page: 732989
  year: 2021
  ident: pone.0293834.ref018
  article-title: Drought sensitivity of sugarcane cultivars shapes rhizosphere bacterial community patterns in response to water stress
  publication-title: Frontiers in Microbiology
  doi: 10.3389/fmicb.2021.732989
– volume: 143
  start-page: 329
  issue: 4
  year: 2011
  ident: pone.0293834.ref053
  article-title: Exophiala sp. LHL08 reprograms Cucumis sativus to higher growth under abiotic stresses
  publication-title: Physiologia plantarum
  doi: 10.1111/j.1399-3054.2011.01508.x
– volume: 2
  year: 1982
  ident: pone.0293834.ref029
  article-title: Exchangeable cations In:
  publication-title: Methods of soil analysis, part.
  doi: 10.2134/agronmonogr9.2.2ed.c9
– volume: 13
  start-page: 825377
  year: 2022
  ident: pone.0293834.ref019
  article-title: Plant growth stage drives the temporal and spatial dynamics of the bacterial microbiome in the rhizosphere of Vigna subterranea
  publication-title: Frontiers in Microbiology
  doi: 10.3389/fmicb.2022.825377
– volume: 19
  start-page: 4106
  issue: 13
  year: 2011
  ident: pone.0293834.ref073
  article-title: New class azaphilone produced by a marine fish-derived Chaetomium globosum. The stereochemistry and biological activities.
  publication-title: Bioorganic & Medicinal Chemistry.
  doi: 10.1016/j.bmc.2011.05.008
– volume: 11
  start-page: 1099
  issue: 6
  year: 2021
  ident: pone.0293834.ref051
  article-title: Effect and compatibility of phosphite with Trichoderma sp. isolates in the control of the Fusarium species complex causing pokkah boeng in sugarcane
  publication-title: Agronomy
  doi: 10.3390/agronomy11061099
SSID ssj0053866
Score 2.4647799
Snippet Sugarcane is one of the major agricultural crops with high economic importance in Thailand. Periodic waterlogging has a long-term negative effect on sugarcane...
SourceID plos
doaj
pubmedcentral
proquest
gale
crossref
SourceType Open Website
Open Access Repository
Aggregation Database
Enrichment Source
Index Database
StartPage e0293834
SubjectTerms Agricultural production
Analysis
Arthrobacter
Bacteria
Biological diversity
Biology and Life Sciences
Biomarkers
Data analysis
Earth Sciences
Ecology and Environmental Sciences
Economic importance
Evaluation
Food processing industry
Gene amplification
Genetic testing
Growth
Microbial activity
Microbiomes
Microbiota (Symbiotic organisms)
Microorganisms
Nitrogen
Plant growth
Productivity
Relative abundance
Rhizosphere
RNA
rRNA 16S
Soil analysis
Soil conditions
Soil fertility
Soil investigations
Soil microbiology
Soil microorganisms
Soil properties
Soil quality
Soil sciences
Sugarcane
Waterlogged ground
Waterlogging
SummonAdditionalLinks – databaseName: DOAJ Directory of Open Access Journals
  dbid: DOA
  link: http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwrV3da9RAEF_knnwR6weNtrqKoD6kzX4lm8cqliqoYK30QVg2m93rwTU5zB3--84ke0cXhPrg6-0k5H4zszOTzPyWkFcQohyD4ieHXEjmstYu16qUuQu1VCFwK0YC089fyrML-elSXd446gt7wiZ64Am4Y8Z5kFIJB5FagoFpzUQTFGud177mAXdfiHnbYmrag8GLyzIOyomKHUe9HK36zh8VEOG0kEkgGvn6d7vybLXshyTlTBsmb0Sg0_vkXkwd6cn0yHvkju8ekL3onAN9Exmk3z4kP8_7xZJeLyaSpWtPbaQeoUjYBAZHYxsH7QNFquO-XTj622J3Z4-voOd0miGhfUeHzRycwXaezqFkX189IhenH76_P8vjMQq5K6tinXvICqzzrvFKtbUGr204920jrAu6aJ0tHA8NJB41LyxgFySENWebInAhkS3_MZl1ANw-oV471XrvpQitrDjgr9sqeBacakrWsIyILabGRY5xPOpiacYPZxXUGhNWBjVhoiYyku-uWk0cG7fIv0N17WSRIXv8AezGRLsxt9lNRp6jss00brrzc3NSVQzKNF3WGXk5SiBLRodtOHO7GQbz8euPfxA6_5YIvY5CoQc4nI2jD_CfkH0rkTxIJMHXXbK8j6a5RWUwUPDVyGhXK7hya65_X36xW8abYmtd5_vNYLjWJeTwleAZ0YmZJwCnK93iaqQiZ0UJdxfVk_-hkqfkLocUcpz05Adktv618YeQ8q2bZ6N3_wE4ilW0
  priority: 102
  providerName: Directory of Open Access Journals
– databaseName: ProQuest Technology Collection
  dbid: 8FG
  link: http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwjV3db9MwELegvPCCGB9aYQODkICHbPFHEucJDUQZSIDEGNoDkuU4dlapi8vSin9_d4lbiISA1_qSNHe-u5-du58JeQYpyjJY_CSAhWQiS2UTleUysb6UmffciJ7A9OOn_PhUfjjLzuKGWxfLKjcxsQ_UdbC4R34I0LZE7q4ye7X8keCpUfh1NR6hcZ3cYJBpsKRLzd5tIjH4cp7HdjlRsMNonYNlaN1BCnlOCTlKRz1r_zY2T5aL0I2A57hs8rc8NLtNbkUASY8Gi--Qa669Q3aii3b0ReSRfnmXfD8J8wW9mA9USxeOmkhAQpG2CaYdjcUcNHiKhMehnlv602CNZ8CN6IYOnSQ0tLRbN-ASpnW0gYX76vweOZ29_frmOImHKSQ2L9JV4gAbGOts5bKsLhX4bsW5qythrFdpbU1qua8AfpQ8NaA7LyG5WVOlnguJnPn3yaQFxe0S6pTNauecFL6WBXclV3XhHfM2q3JWsSkRG51qG5nG8cCLhe4_nxWw4hh0pdESOlpiSpLtVcuBaeMf8q_RXFtZ5MnufwiXjY5upxnnXspMWMB5EsKTUkxUPmNgQwX_20_JYzS2HppOt96uj4qCwWJN5eWUPO0lkCujxWKcxqy7Tr___O0_hE6-jISeRyEfQB3WxAYIeCfk4BpJ7o0kwePtaHgXp-ZGK53-5Rtw5Wa6_nn4yXYYb4oFdq0L605zpXJA8oXgU6JG03yk4PFIOz_vCclZmsPdRfHg709_SG5ygIh9JyffI5PV5drtA6RbVY96v70CyKdOPg
  priority: 102
  providerName: ProQuest
Title Soil microbiome analysis reveals effects of periodic waterlogging stress on sugarcane growth
URI https://www.proquest.com/docview/3069192195
https://www.proquest.com/docview/2886326732
https://pubmed.ncbi.nlm.nih.gov/PMC10621937
https://doaj.org/article/122f4453c05644258813bf51dce8e92f
http://dx.doi.org/10.1371/journal.pone.0293834
Volume 18
hasFullText 1
inHoldings 1
isFullTextHit
isPrint
link http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwjV3db9MwELe27oUXxPjQCqMYhAQ8pIodJ3YeENqmloG0gTaK-oBkOY7dVeqS0rQCXvjbOSduRKRN8OKH-Bwldz7fXXL3O4RegonSBIKfAHwhFrBU6EDECQu0TVlsLVVRDWB6dp6cTtjHaTzdQduerZ6B1Y2hnesnNVkthj-__3oHCv-27trAyXbRcFkWZhiC_RIR20V7YJu462lwxtr_CqDdSeIL6G5b2TFQNY5_e1r3louy6rii3UTKvyzT-B66611KfNTsgX20Y4r7aN8rbYVfe2TpNw_Qt8tyvsDX8wZ86dpg5SFJsANyAoZgn96BS4sdBHKZzzX-oVzWZ-k-Tc9wU1uCywJXmxkoiSoMnkEov756iCbj0ZeT08C3Vwh0wsN1YMBbUNrozMRxngrQ5oxSk2eR0laEuVahpjYDhySloQLeWQbmTqsstDRiDkX_EeoVwLgDhI3QcW6MYZHNGacmpSLn1hCr4ywhGemjaMtTqT32uGuBsZD1DzUOMUjDK-kkIb0k-ihoVy0b7I1_0B87cbW0Djm7vlCuZtIroiSUWsbiSIPnx-DAEoJEmY0JyFDAc9s-euaELZsy1Fb_5RHnBMI3kaR99KKmcOgZhUvPmalNVckPn77-B9HlRYfolSeyJbBDK18SAe_kULk6lIcdSjgDdGf6wG3NLVcqCYFg6pDu0hhWbrfrzdPP22l3U5dyV5hyU0kqRAK-PY9oH4nONu8wuDtTzK9qiHISJnD3iD--_cGeoDsUHMa6rpMeot56tTFPwcFbZwO0y6ccRnFC3Dh-P0B7x6PzzxeD-pPJoNZpN_4e_QEE71ik
linkProvider Scholars Portal
linkToHtml http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwtV3db9MwELdGeYAXxPjQCoMZBAIesiW2kzgPCI2P0rIPJLahPSAZx7G7Sl1cllYV_xR_I-fEKURCwMte64vT3J3vI7n7HUJPwEWpCJKfAGIhFrCMq4DHCQuUyVhsDJG0BjA9OEyGJ-zDaXy6hn60vTCurLK1ibWhLqxy78h3ILTNHHZXFr-afQvc1Cj3dbUdodGoxZ7-voSUrXo5egvyfUrI4N3xm2HgpwoEKknDeaDBSUqlVa7juMg4KHFOiC5yKpXhYaFkqIjJwQ9nJJSgo4aBlVcyDw2hzIHHw75X0FVGwZO7zvTB-9byg-1IEt-eR9Nox2vD9syWejsEv8op67i_ekrAyhf0ZlNbdQLdbpnmb35vcBPd8AEr3m00bB2t6fIWWvcmocLPPW71i9voy5GdTPH5pIF2OtdYesAT7GCiQM2xLx7B1mAHsGyLicJL6WpKrXvxPcZN5wq2Ja4WY-C1LDUeX9jl_OwOOrkUNt9FvRIYt4Gw5ioutNaMmoKlRGeEF6nRkVFxnkR51Ee05alQHtncDdiYivpzXQoZTsMr4SQhvCT6KFhdNWuQPf5B_9qJa0XrcLnrH-zFWPhjLiJCDGMxVRBXMjCHnEc0N3EEMuTwv00fbTlhi6bJdWVdxG6aRpAc8iTro8c1hcPmKF3xz1guqkqMPn7-D6KjTx2iZ57IWGCHkr7hAp7JYX51KDc7lGBhVGd5w6lmy5VK_DqLcGWrrn9efrRadpu6gr5S20UlCOcJZA4pJX3EO2reYXB3pZyc1QDoUZjA7jS99_e7b6Frw-ODfbE_Oty7j64TCE_rLlKyiXrzi4V-AOHkPH9Yn2GMvl620fgJ2CCLrA
linkToPdf http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwtV3db9MwELdGkRAviPGhFQYzCAQ8ZI0_kjgPCI2NamMwEGPTHpBM4thdpS4uTauKf42_jnPiBiIh4GWv9cVp7s73kdz9DqEn4KIUgeQngFiIBzwVKhBRzANlUh4ZQzNWA5i-P4r3T_jbs-hsDf1Y9cK4ssqVTawNdWGVe0c-gNA2ddhdaTQwvizi497w1fRb4CZIuS-tq3EajYoc6u9LSN-qlwd7IOunlA7ffN7dD_yEgUDFSTgPNDjMTGmV6ygqUgEKnVOqi5xlyoiwUFmoqMnBJ6c0zEBfDQeLr7I8NJRxByQP-15BVxOWCHfGxG5bXgJ2JI59qx5LyMBrxvbUlno7BB8rGO-4wnpiQOsXetOJrTpBb7dk8zcfOLyJbvjgFe802raO1nR5C61781Dh5x7D-sVt9OXYjif4YtzAPF1onHnwE-wgo0DlsS8kwdZgB7Zsi7HCy8zVl1r3EnyEmy4WbEtcLUbA66zUeDSzy_n5HXRyKWy-i3olMG4DYS1UVGitOTMFT6hOqSgSo4lRUR6TnPQRW_FUKo9y7oZtTGT96S6BbKfhlXSSkF4SfRS0V00blI9_0L924mppHUZ3_YOdjaQ_8pJQajiPmIIYk4NpFIKw3EQEZCjgf5s-2nLClk3Da2tp5E6SEEgURZz20eOawuF0lE7jR9miquTBh9P_IDr-1CF65omMBXaozDdfwDM5_K8O5WaHEqyN6ixvONVccaWSv84lXLlS1z8vP2qX3aauuK_UdlFJKkQMWUTCaB-Jjpp3GNxdKcfnNRg6CWPYnSX3_n73LXQNzIV8d3B0eB9dpxCpuoZSQjZRbz5b6AcQWc7zh_URxujrZduMn7Avj60
openUrl ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=Soil+microbiome+analysis+reveals+effects+of+periodic+waterlogging+stress+on+sugarcane+growth&rft.jtitle=PloS+one&rft.au=Leelastwattanagul%2C+Onnicha&rft.au=Sutheeworapong%2C+Sawannee&rft.au=Ahmad+Nuruddin+Khoiri&rft.au=Dulsawat%2C+Sudarat&rft.date=2023-11-02&rft.pub=Public+Library+of+Science&rft.eissn=1932-6203&rft.volume=18&rft.issue=11&rft_id=info:doi/10.1371%2Fjournal.pone.0293834&rft.externalDocID=3069192195
thumbnail_l http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=1932-6203&client=summon
thumbnail_m http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=1932-6203&client=summon
thumbnail_s http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=1932-6203&client=summon