Trans-Proteomic Pipeline, a standardized data processing pipeline for large-scale reproducible proteomics informatics

• Published in: Proteomics. Clinical applications Vol. 9; no. 7-8; pp. 745 - 754
• Main Authors: Deutsch, Eric W., Mendoza, Luis, Shteynberg, David, Slagel, Joseph, Sun, Zhi, Moritz, Robert L.
• Format: Journal Article
• Language: English
• Published: Germany Blackwell Publishing Ltd 01.08.2015; Wiley Subscription Services, Inc
• Subjects: Bioinformatics; Computational Biology - methods; Data processing; Humans; Mass spectrometry; Proteins; Proteome - metabolism; Proteomics; Proteomics - methods; Reproducibility of Results; Software; Statistics as Topic; Bioinformatics; Mass spectrometry

Democratization of genomics technologies has enabled the rapid determination of genotypes. More recently the democratization of comprehensive proteomics technologies is enabling the determination of the cellular phenotype and the molecular events that define its dynamic state. Core proteomic technol...