scPriorGraph: constructing biosemantic cell–cell graphs with prior gene set selection for cell type identification from scRNA-seq data - Cao, Xiyue; Huang, Yu-An; You, Zhu-Hong; Shang, Xuequn; Hu, Lun; Hu, Peng-Wei; Huang, Zhi-An (Genome Biology, 2024)
Keywords: Algorithms; Cell-type identification; Classification; Communication; Computational Biology - methods; computational methodology; Data analysis; Datasets; Dual-channel graph neural network; Gene expression; genes; Graph augmentation; Graphs; Humans; Ligand-receptor network; Ligands; Machine learning; Medical research; Metabolism; Method; Neural networks; Neural Networks, Computer; Noise reduction; Pathway; RNA-Seq - methods; Semantics; Signal transduction; Single-Cell Analysis - methods; Single-Cell Gene Expression Analysis; Single-cell RNA sequencing; Software; Sparsity; Single-cell RNA sequencing; Cell-type identification; Dual-channel graph neural network; Ligand-receptor network; Pathway; Graph augmentation